Strain Fitness in Serratia liquefaciens MT49 around IAI46_03965

Experiment: Cadmium acetate 40 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_03960 and IAI46_03965 are separated by 40 nucleotidesIAI46_03965 and IAI46_03970 are separated by 120 nucleotidesIAI46_03970 and IAI46_03975 are separated by 121 nucleotidesIAI46_03975 and IAI46_03980 are separated by 312 nucleotides IAI46_03960: IAI46_03960 - bifunctional chorismate mutase/prephenate dehydrogenase, at 856,934 to 858,055 _03960 IAI46_03965: IAI46_03965 - bifunctional chorismate mutase/prephenate dehydratase, at 858,096 to 859,253 _03965 IAI46_03970: IAI46_03970 - pheA operon leader peptide PheL, at 859,374 to 859,421 _03970 IAI46_03975: IAI46_03975 - ribosome-associated translation inhibitor RaiA, at 859,543 to 859,884 _03975 IAI46_03980: IAI46_03980 - outer membrane protein assembly factor BamD, at 860,197 to 860,928 _03980 Position (kb) 858 859 860Strain fitness (log2 ratio) -1 0 1 2at 857.180 kb on + strand, within IAI46_03960at 857.180 kb on + strand, within IAI46_03960at 857.181 kb on - strand, within IAI46_03960at 857.181 kb on - strand, within IAI46_03960at 857.214 kb on + strand, within IAI46_03960at 857.215 kb on - strand, within IAI46_03960at 857.344 kb on + strand, within IAI46_03960at 857.345 kb on - strand, within IAI46_03960at 857.386 kb on + strand, within IAI46_03960at 857.387 kb on - strand, within IAI46_03960at 857.441 kb on - strand, within IAI46_03960at 857.441 kb on - strand, within IAI46_03960at 857.545 kb on - strand, within IAI46_03960at 857.545 kb on - strand, within IAI46_03960at 857.573 kb on + strand, within IAI46_03960at 857.573 kb on + strand, within IAI46_03960at 857.574 kb on - strand, within IAI46_03960at 857.601 kb on - strand, within IAI46_03960at 857.651 kb on - strand, within IAI46_03960at 857.687 kb on - strand, within IAI46_03960at 857.720 kb on + strand, within IAI46_03960at 857.854 kb on + strand, within IAI46_03960at 857.854 kb on + strand, within IAI46_03960at 857.854 kb on + strand, within IAI46_03960at 857.854 kb on + strand, within IAI46_03960at 857.854 kb on + strand, within IAI46_03960at 857.854 kb on + strand, within IAI46_03960at 857.855 kb on - strand, within IAI46_03960at 857.855 kb on - strand, within IAI46_03960at 857.855 kb on - strand, within IAI46_03960at 857.855 kb on - strand, within IAI46_03960at 857.892 kb on - strand, within IAI46_03960at 857.894 kb on + strand, within IAI46_03960at 857.894 kb on + strand, within IAI46_03960at 857.895 kb on - strand, within IAI46_03960at 857.895 kb on - strand, within IAI46_03960at 857.990 kb on + strandat 857.991 kb on - strandat 858.053 kb on + strandat 858.060 kb on - strandat 858.093 kb on + strandat 858.093 kb on + strandat 858.213 kb on - strand, within IAI46_03965at 858.412 kb on - strand, within IAI46_03965at 858.416 kb on + strand, within IAI46_03965at 858.425 kb on + strand, within IAI46_03965at 858.425 kb on + strand, within IAI46_03965at 858.453 kb on - strand, within IAI46_03965at 858.453 kb on - strand, within IAI46_03965at 858.476 kb on - strand, within IAI46_03965at 858.596 kb on + strand, within IAI46_03965at 858.596 kb on + strand, within IAI46_03965at 858.635 kb on + strand, within IAI46_03965at 858.636 kb on - strand, within IAI46_03965at 858.636 kb on - strand, within IAI46_03965at 858.636 kb on - strand, within IAI46_03965at 858.637 kb on + strand, within IAI46_03965at 858.637 kb on + strand, within IAI46_03965at 858.638 kb on - strand, within IAI46_03965at 858.638 kb on - strand, within IAI46_03965at 858.638 kb on - strand, within IAI46_03965at 858.638 kb on - strand, within IAI46_03965at 858.638 kb on - strand, within IAI46_03965at 858.639 kb on + strand, within IAI46_03965at 858.639 kb on + strand, within IAI46_03965at 858.640 kb on - strand, within IAI46_03965at 858.640 kb on - strand, within IAI46_03965at 858.696 kb on - strand, within IAI46_03965at 858.748 kb on + strand, within IAI46_03965at 858.749 kb on - strand, within IAI46_03965at 858.833 kb on + strand, within IAI46_03965at 858.834 kb on - strand, within IAI46_03965at 858.889 kb on + strand, within IAI46_03965at 858.913 kb on + strand, within IAI46_03965at 858.914 kb on - strand, within IAI46_03965at 858.914 kb on - strand, within IAI46_03965at 859.003 kb on - strand, within IAI46_03965at 859.017 kb on - strand, within IAI46_03965at 859.043 kb on - strand, within IAI46_03965at 859.060 kb on + strand, within IAI46_03965at 859.112 kb on + strand, within IAI46_03965at 859.113 kb on - strand, within IAI46_03965at 859.113 kb on - strand, within IAI46_03965at 859.148 kb on + strandat 859.149 kb on - strandat 859.152 kb on + strandat 859.153 kb on - strandat 859.153 kb on - strandat 859.200 kb on - strandat 859.200 kb on - strandat 859.200 kb on - strandat 859.253 kb on + strandat 859.277 kb on + strandat 859.278 kb on - strandat 859.280 kb on - strandat 859.286 kb on + strandat 859.286 kb on + strandat 859.287 kb on - strandat 859.291 kb on + strandat 859.350 kb on - strandat 859.385 kb on + strand, within IAI46_03970at 859.386 kb on - strand, within IAI46_03970at 859.412 kb on + strand, within IAI46_03970at 859.423 kb on + strandat 859.424 kb on - strandat 859.424 kb on - strandat 859.424 kb on - strandat 859.424 kb on - strandat 859.427 kb on - strandat 859.427 kb on - strandat 859.451 kb on + strandat 859.452 kb on - strandat 859.471 kb on - strandat 859.671 kb on + strand, within IAI46_03975at 859.673 kb on + strand, within IAI46_03975at 859.673 kb on + strand, within IAI46_03975at 859.673 kb on + strand, within IAI46_03975at 859.673 kb on + strand, within IAI46_03975at 859.673 kb on + strand, within IAI46_03975at 859.673 kb on + strand, within IAI46_03975at 859.673 kb on + strand, within IAI46_03975at 859.674 kb on - strand, within IAI46_03975at 859.674 kb on - strand, within IAI46_03975at 859.674 kb on - strand, within IAI46_03975at 859.674 kb on - strand, within IAI46_03975at 859.674 kb on - strand, within IAI46_03975at 859.674 kb on - strand, within IAI46_03975at 859.674 kb on - strand, within IAI46_03975at 859.674 kb on - strand, within IAI46_03975at 859.674 kb on - strand, within IAI46_03975at 859.674 kb on - strand, within IAI46_03975at 859.674 kb on - strand, within IAI46_03975at 859.714 kb on - strand, within IAI46_03975at 859.723 kb on - strand, within IAI46_03975at 859.771 kb on - strand, within IAI46_03975at 859.779 kb on + strand, within IAI46_03975at 859.851 kb on + strandat 859.869 kb on + strandat 859.869 kb on + strandat 859.870 kb on - strandat 859.885 kb on - strandat 859.886 kb on + strandat 859.886 kb on + strandat 859.886 kb on + strandat 859.887 kb on - strandat 859.891 kb on + strandat 859.892 kb on - strandat 860.117 kb on - strandat 860.146 kb on - strandat 860.198 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium acetate 40 uM, aerobic
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857,180 + IAI46_03960 0.22 -0.8
857,180 + IAI46_03960 0.22 +0.3
857,181 - IAI46_03960 0.22 +0.2
857,181 - IAI46_03960 0.22 -0.4
857,214 + IAI46_03960 0.25 -0.0
857,215 - IAI46_03960 0.25 -0.4
857,344 + IAI46_03960 0.37 +0.0
857,345 - IAI46_03960 0.37 -0.6
857,386 + IAI46_03960 0.40 -1.2
857,387 - IAI46_03960 0.40 +0.8
857,441 - IAI46_03960 0.45 -1.5
857,441 - IAI46_03960 0.45 -1.0
857,545 - IAI46_03960 0.54 -1.5
857,545 - IAI46_03960 0.54 -0.2
857,573 + IAI46_03960 0.57 -0.2
857,573 + IAI46_03960 0.57 -0.9
857,574 - IAI46_03960 0.57 -0.8
857,601 - IAI46_03960 0.59 -1.3
857,651 - IAI46_03960 0.64 -0.5
857,687 - IAI46_03960 0.67 -0.7
857,720 + IAI46_03960 0.70 -0.5
857,854 + IAI46_03960 0.82 -0.8
857,854 + IAI46_03960 0.82 -1.1
857,854 + IAI46_03960 0.82 -0.1
857,854 + IAI46_03960 0.82 -0.7
857,854 + IAI46_03960 0.82 -1.0
857,854 + IAI46_03960 0.82 -0.3
857,855 - IAI46_03960 0.82 -0.8
857,855 - IAI46_03960 0.82 -0.2
857,855 - IAI46_03960 0.82 -0.8
857,855 - IAI46_03960 0.82 -0.5
857,892 - IAI46_03960 0.85 -1.4
857,894 + IAI46_03960 0.86 -0.3
857,894 + IAI46_03960 0.86 -1.0
857,895 - IAI46_03960 0.86 -0.6
857,895 - IAI46_03960 0.86 -1.5
857,990 + -1.1
857,991 - -0.1
858,053 + +0.1
858,060 - +0.3
858,093 + +0.5
858,093 + +0.5
858,213 - IAI46_03965 0.10 +0.1
858,412 - IAI46_03965 0.27 -1.5
858,416 + IAI46_03965 0.28 +0.5
858,425 + IAI46_03965 0.28 -0.5
858,425 + IAI46_03965 0.28 -0.7
858,453 - IAI46_03965 0.31 -0.5
858,453 - IAI46_03965 0.31 +1.1
858,476 - IAI46_03965 0.33 +0.5
858,596 + IAI46_03965 0.43 -1.2
858,596 + IAI46_03965 0.43 -0.7
858,635 + IAI46_03965 0.47 +0.3
858,636 - IAI46_03965 0.47 +0.3
858,636 - IAI46_03965 0.47 +0.5
858,636 - IAI46_03965 0.47 -1.3
858,637 + IAI46_03965 0.47 +0.1
858,637 + IAI46_03965 0.47 -0.7
858,638 - IAI46_03965 0.47 +0.5
858,638 - IAI46_03965 0.47 -0.4
858,638 - IAI46_03965 0.47 +0.6
858,638 - IAI46_03965 0.47 -0.2
858,638 - IAI46_03965 0.47 -0.9
858,639 + IAI46_03965 0.47 +1.2
858,639 + IAI46_03965 0.47 +1.1
858,640 - IAI46_03965 0.47 -0.8
858,640 - IAI46_03965 0.47 +0.4
858,696 - IAI46_03965 0.52 -0.1
858,748 + IAI46_03965 0.56 -0.9
858,749 - IAI46_03965 0.56 -0.6
858,833 + IAI46_03965 0.64 +0.7
858,834 - IAI46_03965 0.64 -1.0
858,889 + IAI46_03965 0.68 +2.1
858,913 + IAI46_03965 0.71 +0.5
858,914 - IAI46_03965 0.71 +0.3
858,914 - IAI46_03965 0.71 +0.5
859,003 - IAI46_03965 0.78 +2.3
859,017 - IAI46_03965 0.80 -0.7
859,043 - IAI46_03965 0.82 +0.6
859,060 + IAI46_03965 0.83 -0.8
859,112 + IAI46_03965 0.88 +0.7
859,113 - IAI46_03965 0.88 +0.0
859,113 - IAI46_03965 0.88 +0.1
859,148 + +0.1
859,149 - -0.6
859,152 + +0.1
859,153 - -0.1
859,153 - +0.7
859,200 - +0.5
859,200 - +0.2
859,200 - -1.1
859,253 + -1.0
859,277 + +0.2
859,278 - +0.6
859,280 - -0.7
859,286 + -0.4
859,286 + +0.1
859,287 - +0.1
859,291 + +0.2
859,350 - -0.6
859,385 + IAI46_03970 0.23 -0.1
859,386 - IAI46_03970 0.25 +0.4
859,412 + IAI46_03970 0.79 +0.4
859,423 + +0.5
859,424 - +0.5
859,424 - +0.6
859,424 - +0.0
859,424 - +0.2
859,427 - +0.7
859,427 - +0.9
859,451 + +1.2
859,452 - -1.3
859,471 - +0.2
859,671 + IAI46_03975 0.37 -1.1
859,673 + IAI46_03975 0.38 +0.1
859,673 + IAI46_03975 0.38 +0.1
859,673 + IAI46_03975 0.38 -0.8
859,673 + IAI46_03975 0.38 +0.3
859,673 + IAI46_03975 0.38 +0.5
859,673 + IAI46_03975 0.38 -0.5
859,673 + IAI46_03975 0.38 +0.5
859,674 - IAI46_03975 0.38 +0.5
859,674 - IAI46_03975 0.38 +0.3
859,674 - IAI46_03975 0.38 +0.2
859,674 - IAI46_03975 0.38 -0.3
859,674 - IAI46_03975 0.38 +0.4
859,674 - IAI46_03975 0.38 +0.4
859,674 - IAI46_03975 0.38 -1.1
859,674 - IAI46_03975 0.38 -0.8
859,674 - IAI46_03975 0.38 +0.6
859,674 - IAI46_03975 0.38 +0.5
859,674 - IAI46_03975 0.38 -0.8
859,714 - IAI46_03975 0.50 +0.2
859,723 - IAI46_03975 0.53 -0.6
859,771 - IAI46_03975 0.67 -0.3
859,779 + IAI46_03975 0.69 -0.3
859,851 + +1.0
859,869 + +0.8
859,869 + +0.9
859,870 - +0.6
859,885 - -0.5
859,886 + +0.9
859,886 + -0.5
859,886 + +0.4
859,887 - -0.0
859,891 + +0.5
859,892 - +0.5
860,117 - +0.1
860,146 - -0.6
860,198 + +0.6

Or see this region's nucleotide sequence