Strain Fitness in Serratia liquefaciens MT49 around IAI46_03715

Experiment: Cadmium acetate 40 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_03710 and IAI46_03715 are separated by 9 nucleotidesIAI46_03715 and IAI46_03720 are separated by 11 nucleotides IAI46_03710: IAI46_03710 - uroporphyrinogen-III C-methyltransferase, at 809,297 to 810,727 _03710 IAI46_03715: IAI46_03715 - sulfate adenylyltransferase subunit CysD, at 810,737 to 811,645 _03715 IAI46_03720: IAI46_03720 - sulfate adenylyltransferase subunit CysN, at 811,657 to 813,084 _03720 Position (kb) 810 811 812Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 810.045 kb on - strand, within IAI46_03710at 810.370 kb on + strand, within IAI46_03710at 810.370 kb on + strand, within IAI46_03710at 810.371 kb on - strand, within IAI46_03710at 810.449 kb on + strand, within IAI46_03710at 810.449 kb on + strand, within IAI46_03710at 810.449 kb on + strand, within IAI46_03710at 810.449 kb on + strand, within IAI46_03710at 810.450 kb on - strand, within IAI46_03710at 810.450 kb on - strand, within IAI46_03710at 810.450 kb on - strand, within IAI46_03710at 810.450 kb on - strand, within IAI46_03710at 810.492 kb on + strand, within IAI46_03710at 810.643 kb on - strandat 810.725 kb on + strandat 810.726 kb on - strandat 810.737 kb on - strandat 810.784 kb on + strandat 810.784 kb on + strandat 810.784 kb on + strandat 810.785 kb on - strandat 810.785 kb on - strandat 810.790 kb on + strandat 810.790 kb on + strandat 810.790 kb on + strandat 810.791 kb on - strandat 810.791 kb on - strandat 810.791 kb on - strandat 810.791 kb on - strandat 810.791 kb on - strandat 810.836 kb on + strand, within IAI46_03715at 810.837 kb on - strand, within IAI46_03715at 810.837 kb on - strand, within IAI46_03715at 810.881 kb on - strand, within IAI46_03715at 811.066 kb on + strand, within IAI46_03715at 811.066 kb on + strand, within IAI46_03715at 811.112 kb on + strand, within IAI46_03715at 811.177 kb on + strand, within IAI46_03715at 811.177 kb on + strand, within IAI46_03715at 811.178 kb on - strand, within IAI46_03715at 811.178 kb on - strand, within IAI46_03715at 811.181 kb on + strand, within IAI46_03715at 811.181 kb on + strand, within IAI46_03715at 811.247 kb on + strand, within IAI46_03715at 811.247 kb on + strand, within IAI46_03715at 811.248 kb on - strand, within IAI46_03715at 811.316 kb on - strand, within IAI46_03715at 811.361 kb on + strand, within IAI46_03715at 811.362 kb on - strand, within IAI46_03715at 811.362 kb on - strand, within IAI46_03715at 811.386 kb on + strand, within IAI46_03715at 811.387 kb on - strand, within IAI46_03715at 811.426 kb on + strand, within IAI46_03715at 811.638 kb on - strandat 811.708 kb on + strandat 811.708 kb on + strandat 811.709 kb on - strandat 811.806 kb on + strand, within IAI46_03720at 811.819 kb on + strand, within IAI46_03720at 811.837 kb on - strand, within IAI46_03720at 811.936 kb on - strand, within IAI46_03720at 811.946 kb on + strand, within IAI46_03720at 811.946 kb on + strand, within IAI46_03720at 811.946 kb on + strand, within IAI46_03720at 811.946 kb on + strand, within IAI46_03720at 811.946 kb on + strand, within IAI46_03720at 811.947 kb on - strand, within IAI46_03720at 811.952 kb on - strand, within IAI46_03720at 812.014 kb on + strand, within IAI46_03720at 812.014 kb on + strand, within IAI46_03720at 812.014 kb on + strand, within IAI46_03720at 812.014 kb on + strand, within IAI46_03720at 812.014 kb on + strand, within IAI46_03720at 812.015 kb on - strand, within IAI46_03720at 812.026 kb on - strand, within IAI46_03720at 812.160 kb on + strand, within IAI46_03720at 812.175 kb on - strand, within IAI46_03720at 812.175 kb on - strand, within IAI46_03720at 812.175 kb on - strand, within IAI46_03720at 812.179 kb on + strand, within IAI46_03720at 812.180 kb on - strand, within IAI46_03720at 812.215 kb on + strand, within IAI46_03720at 812.215 kb on + strand, within IAI46_03720at 812.216 kb on - strand, within IAI46_03720at 812.216 kb on - strand, within IAI46_03720at 812.410 kb on + strand, within IAI46_03720at 812.411 kb on - strand, within IAI46_03720at 812.411 kb on - strand, within IAI46_03720at 812.411 kb on - strand, within IAI46_03720at 812.444 kb on - strand, within IAI46_03720at 812.468 kb on + strand, within IAI46_03720at 812.469 kb on - strand, within IAI46_03720at 812.477 kb on + strand, within IAI46_03720at 812.495 kb on + strand, within IAI46_03720at 812.518 kb on - strand, within IAI46_03720at 812.522 kb on + strand, within IAI46_03720at 812.530 kb on - strand, within IAI46_03720at 812.608 kb on - strand, within IAI46_03720at 812.611 kb on - strand, within IAI46_03720

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Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium acetate 40 uM, aerobic
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810,045 - IAI46_03710 0.52 -1.6
810,370 + IAI46_03710 0.75 +0.2
810,370 + IAI46_03710 0.75 -0.1
810,371 - IAI46_03710 0.75 -0.3
810,449 + IAI46_03710 0.81 +0.7
810,449 + IAI46_03710 0.81 -0.3
810,449 + IAI46_03710 0.81 -0.7
810,449 + IAI46_03710 0.81 -0.2
810,450 - IAI46_03710 0.81 -0.5
810,450 - IAI46_03710 0.81 -0.2
810,450 - IAI46_03710 0.81 -1.1
810,450 - IAI46_03710 0.81 -1.0
810,492 + IAI46_03710 0.84 -0.7
810,643 - -1.4
810,725 + -0.6
810,726 - -2.5
810,737 - -2.9
810,784 + -0.9
810,784 + -0.5
810,784 + -2.6
810,785 - -1.7
810,785 - -0.5
810,790 + -2.4
810,790 + -1.4
810,790 + -1.9
810,791 - +0.2
810,791 - -0.1
810,791 - -1.7
810,791 - -0.2
810,791 - -2.8
810,836 + IAI46_03715 0.11 -3.2
810,837 - IAI46_03715 0.11 -3.1
810,837 - IAI46_03715 0.11 -1.2
810,881 - IAI46_03715 0.16 -1.1
811,066 + IAI46_03715 0.36 -2.2
811,066 + IAI46_03715 0.36 -1.2
811,112 + IAI46_03715 0.41 -2.7
811,177 + IAI46_03715 0.48 -1.9
811,177 + IAI46_03715 0.48 -0.4
811,178 - IAI46_03715 0.49 -1.5
811,178 - IAI46_03715 0.49 -1.2
811,181 + IAI46_03715 0.49 -2.3
811,181 + IAI46_03715 0.49 -1.6
811,247 + IAI46_03715 0.56 -2.0
811,247 + IAI46_03715 0.56 -1.0
811,248 - IAI46_03715 0.56 -1.7
811,316 - IAI46_03715 0.64 -1.5
811,361 + IAI46_03715 0.69 -1.0
811,362 - IAI46_03715 0.69 -2.9
811,362 - IAI46_03715 0.69 -1.4
811,386 + IAI46_03715 0.71 -1.9
811,387 - IAI46_03715 0.72 -1.4
811,426 + IAI46_03715 0.76 -1.9
811,638 - -0.5
811,708 + -2.5
811,708 + -1.5
811,709 - -1.1
811,806 + IAI46_03720 0.10 -0.9
811,819 + IAI46_03720 0.11 +0.6
811,837 - IAI46_03720 0.13 -0.6
811,936 - IAI46_03720 0.20 -3.1
811,946 + IAI46_03720 0.20 -1.5
811,946 + IAI46_03720 0.20 -0.0
811,946 + IAI46_03720 0.20 -0.9
811,946 + IAI46_03720 0.20 -1.8
811,946 + IAI46_03720 0.20 -1.5
811,947 - IAI46_03720 0.20 -2.7
811,952 - IAI46_03720 0.21 -2.2
812,014 + IAI46_03720 0.25 +0.5
812,014 + IAI46_03720 0.25 -1.1
812,014 + IAI46_03720 0.25 -1.7
812,014 + IAI46_03720 0.25 +0.0
812,014 + IAI46_03720 0.25 -2.3
812,015 - IAI46_03720 0.25 -1.5
812,026 - IAI46_03720 0.26 -3.8
812,160 + IAI46_03720 0.35 -1.9
812,175 - IAI46_03720 0.36 -1.3
812,175 - IAI46_03720 0.36 -1.7
812,175 - IAI46_03720 0.36 -0.9
812,179 + IAI46_03720 0.37 -0.0
812,180 - IAI46_03720 0.37 -2.2
812,215 + IAI46_03720 0.39 -0.5
812,215 + IAI46_03720 0.39 -1.5
812,216 - IAI46_03720 0.39 -1.0
812,216 - IAI46_03720 0.39 -1.9
812,410 + IAI46_03720 0.53 +0.4
812,411 - IAI46_03720 0.53 -1.1
812,411 - IAI46_03720 0.53 -0.5
812,411 - IAI46_03720 0.53 -0.4
812,444 - IAI46_03720 0.55 -2.0
812,468 + IAI46_03720 0.57 -1.5
812,469 - IAI46_03720 0.57 -1.6
812,477 + IAI46_03720 0.57 -0.9
812,495 + IAI46_03720 0.59 -2.4
812,518 - IAI46_03720 0.60 -1.5
812,522 + IAI46_03720 0.61 -2.7
812,530 - IAI46_03720 0.61 -1.1
812,608 - IAI46_03720 0.67 -1.6
812,611 - IAI46_03720 0.67 -2.1

Or see this region's nucleotide sequence