Experiment: Cadmium acetate 40 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_02825 and IAI46_02830 are separated by 263 nucleotides IAI46_02830 and IAI46_02835 are separated by 87 nucleotides IAI46_02835 and IAI46_02840 are separated by 44 nucleotides IAI46_02840 and IAI46_02845 are separated by 34 nucleotides IAI46_02845 and IAI46_02850 are separated by 72 nucleotides
IAI46_02825: IAI46_02825 - GGDEF domain-containing protein, at 607,125 to 608,198
_02825
IAI46_02830: IAI46_02830 - DUF1435 domain-containing protein, at 608,462 to 608,746
_02830
IAI46_02835: IAI46_02835 - tRNA-Leu, at 608,834 to 608,920
_02835
IAI46_02840: IAI46_02840 - tRNA-Leu, at 608,965 to 609,051
_02840
IAI46_02845: IAI46_02845 - tRNA-Leu, at 609,086 to 609,172
_02845
IAI46_02850: IAI46_02850 - LysR family transcriptional regulator, at 609,245 to 610,189
_02850
Position (kb) 609
610 Strain fitness (log2 ratio) -2
-1
0
1 at 608.105 kb on + strand at 608.106 kb on - strand at 608.109 kb on + strand at 608.131 kb on - strand at 608.151 kb on + strand at 608.183 kb on - strand at 608.198 kb on + strand at 608.220 kb on - strand at 608.284 kb on + strand at 608.284 kb on + strand at 608.284 kb on + strand at 608.285 kb on - strand at 608.285 kb on - strand at 608.346 kb on - strand at 608.362 kb on + strand at 608.362 kb on + strand at 608.362 kb on + strand at 608.362 kb on + strand at 608.363 kb on - strand at 608.363 kb on - strand at 608.363 kb on - strand at 608.363 kb on - strand at 608.562 kb on + strand, within IAI46_02830 at 608.562 kb on + strand, within IAI46_02830 at 608.593 kb on + strand, within IAI46_02830 at 608.593 kb on + strand, within IAI46_02830 at 608.672 kb on + strand, within IAI46_02830 at 608.693 kb on - strand, within IAI46_02830 at 608.745 kb on - strand at 608.797 kb on - strand at 608.797 kb on - strand at 608.797 kb on - strand at 608.797 kb on - strand at 608.870 kb on - strand, within IAI46_02835 at 608.878 kb on + strand, within IAI46_02835 at 608.953 kb on - strand at 608.953 kb on - strand at 608.953 kb on - strand at 609.001 kb on - strand, within IAI46_02840 at 609.010 kb on - strand, within IAI46_02840 at 609.010 kb on - strand, within IAI46_02840 at 609.068 kb on - strand at 609.068 kb on - strand at 609.070 kb on - strand at 609.070 kb on - strand at 609.083 kb on - strand at 609.083 kb on - strand at 609.181 kb on + strand at 609.182 kb on - strand at 609.182 kb on - strand at 609.182 kb on - strand at 609.182 kb on - strand at 609.195 kb on - strand at 609.201 kb on - strand at 609.235 kb on - strand at 609.243 kb on - strand at 609.246 kb on + strand at 609.247 kb on - strand at 609.247 kb on - strand at 609.247 kb on - strand at 609.301 kb on - strand at 609.301 kb on - strand at 609.372 kb on + strand, within IAI46_02850 at 609.372 kb on + strand, within IAI46_02850 at 609.373 kb on - strand, within IAI46_02850 at 609.373 kb on - strand, within IAI46_02850 at 609.373 kb on - strand, within IAI46_02850 at 609.373 kb on - strand, within IAI46_02850 at 609.381 kb on + strand, within IAI46_02850 at 609.459 kb on + strand, within IAI46_02850 at 609.507 kb on + strand, within IAI46_02850 at 609.508 kb on - strand, within IAI46_02850 at 609.615 kb on + strand, within IAI46_02850 at 609.616 kb on - strand, within IAI46_02850 at 609.620 kb on + strand, within IAI46_02850 at 609.678 kb on + strand, within IAI46_02850 at 609.678 kb on + strand, within IAI46_02850 at 609.678 kb on + strand, within IAI46_02850 at 609.678 kb on + strand, within IAI46_02850 at 609.679 kb on - strand, within IAI46_02850 at 609.773 kb on + strand, within IAI46_02850 at 609.773 kb on + strand, within IAI46_02850 at 609.789 kb on - strand, within IAI46_02850 at 609.899 kb on - strand, within IAI46_02850 at 609.993 kb on + strand, within IAI46_02850 at 609.994 kb on - strand, within IAI46_02850 at 609.997 kb on - strand, within IAI46_02850 at 609.997 kb on - strand, within IAI46_02850 at 610.022 kb on + strand, within IAI46_02850 at 610.023 kb on - strand, within IAI46_02850 at 610.023 kb on - strand, within IAI46_02850 at 610.023 kb on - strand, within IAI46_02850 at 610.079 kb on - strand, within IAI46_02850 at 610.106 kb on + strand at 610.159 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cadmium acetate 40 uM, aerobic remove 608,105 + -0.5 608,106 - +0.4 608,109 + +0.0 608,131 - +0.3 608,151 + -1.3 608,183 - +0.9 608,198 + -1.1 608,220 - -1.2 608,284 + -0.1 608,284 + -1.8 608,284 + -0.3 608,285 - -0.2 608,285 - +0.9 608,346 - +0.4 608,362 + -0.1 608,362 + +0.6 608,362 + -1.6 608,362 + +0.0 608,363 - +0.2 608,363 - +0.1 608,363 - -1.0 608,363 - +0.7 608,562 + IAI46_02830 0.35 -0.8 608,562 + IAI46_02830 0.35 +0.3 608,593 + IAI46_02830 0.46 +0.4 608,593 + IAI46_02830 0.46 -0.2 608,672 + IAI46_02830 0.74 +1.6 608,693 - IAI46_02830 0.81 -1.1 608,745 - +0.7 608,797 - +0.2 608,797 - -0.2 608,797 - -0.4 608,797 - -0.1 608,870 - IAI46_02835 0.41 +0.2 608,878 + IAI46_02835 0.51 +0.4 608,953 - -0.7 608,953 - +0.3 608,953 - +0.4 609,001 - IAI46_02840 0.41 +0.5 609,010 - IAI46_02840 0.52 -0.4 609,010 - IAI46_02840 0.52 -0.2 609,068 - -0.1 609,068 - -0.5 609,070 - +0.1 609,070 - +0.6 609,083 - +0.2 609,083 - +0.3 609,181 + +0.7 609,182 - +0.2 609,182 - -0.5 609,182 - +0.4 609,182 - +0.6 609,195 - -0.1 609,201 - +0.9 609,235 - +0.2 609,243 - +0.9 609,246 + +0.7 609,247 - -0.7 609,247 - +0.7 609,247 - +0.7 609,301 - -1.3 609,301 - +0.2 609,372 + IAI46_02850 0.13 +0.1 609,372 + IAI46_02850 0.13 -0.8 609,373 - IAI46_02850 0.14 +0.2 609,373 - IAI46_02850 0.14 +1.0 609,373 - IAI46_02850 0.14 +0.9 609,373 - IAI46_02850 0.14 +0.2 609,381 + IAI46_02850 0.14 -0.2 609,459 + IAI46_02850 0.23 +0.7 609,507 + IAI46_02850 0.28 +0.0 609,508 - IAI46_02850 0.28 -0.6 609,615 + IAI46_02850 0.39 +0.6 609,616 - IAI46_02850 0.39 +0.0 609,620 + IAI46_02850 0.40 +0.4 609,678 + IAI46_02850 0.46 -0.6 609,678 + IAI46_02850 0.46 +1.2 609,678 + IAI46_02850 0.46 +0.5 609,678 + IAI46_02850 0.46 -0.1 609,679 - IAI46_02850 0.46 +0.3 609,773 + IAI46_02850 0.56 +1.2 609,773 + IAI46_02850 0.56 -0.8 609,789 - IAI46_02850 0.58 +0.3 609,899 - IAI46_02850 0.69 +0.0 609,993 + IAI46_02850 0.79 +1.4 609,994 - IAI46_02850 0.79 +0.4 609,997 - IAI46_02850 0.80 -1.1 609,997 - IAI46_02850 0.80 +1.7 610,022 + IAI46_02850 0.82 +0.1 610,023 - IAI46_02850 0.82 +0.3 610,023 - IAI46_02850 0.82 -0.2 610,023 - IAI46_02850 0.82 +0.8 610,079 - IAI46_02850 0.88 -0.1 610,106 + +0.8 610,159 + +0.6
Or see this region's nucleotide sequence