Strain Fitness in Serratia liquefaciens MT49 around IAI46_02785

Experiment: Cadmium acetate 40 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_02780 and IAI46_02785 are separated by 327 nucleotidesIAI46_02785 and IAI46_02790 are separated by 235 nucleotides IAI46_02780: IAI46_02780 - D-alanyl-D-alanine- carboxypeptidase/endopeptidase AmpH, at 598,482 to 599,624 _02780 IAI46_02785: IAI46_02785 - FadR family transcriptional regulator, at 599,952 to 600,710 _02785 IAI46_02790: IAI46_02790 - SDR family oxidoreductase, at 600,946 to 601,686 _02790 Position (kb) 599 600 601Strain fitness (log2 ratio) -2 -1 0 1at 599.017 kb on + strand, within IAI46_02780at 599.018 kb on - strand, within IAI46_02780at 599.062 kb on + strand, within IAI46_02780at 599.063 kb on - strand, within IAI46_02780at 599.077 kb on + strand, within IAI46_02780at 599.078 kb on - strand, within IAI46_02780at 599.078 kb on - strand, within IAI46_02780at 599.078 kb on - strand, within IAI46_02780at 599.088 kb on + strand, within IAI46_02780at 599.089 kb on - strand, within IAI46_02780at 599.089 kb on - strand, within IAI46_02780at 599.255 kb on + strand, within IAI46_02780at 599.257 kb on + strand, within IAI46_02780at 599.258 kb on - strand, within IAI46_02780at 599.258 kb on - strand, within IAI46_02780at 599.269 kb on + strand, within IAI46_02780at 599.269 kb on + strand, within IAI46_02780at 599.269 kb on + strand, within IAI46_02780at 599.269 kb on + strand, within IAI46_02780at 599.269 kb on + strand, within IAI46_02780at 599.269 kb on + strand, within IAI46_02780at 599.269 kb on + strand, within IAI46_02780at 599.270 kb on - strand, within IAI46_02780at 599.270 kb on - strand, within IAI46_02780at 599.270 kb on - strand, within IAI46_02780at 599.270 kb on - strand, within IAI46_02780at 599.287 kb on + strand, within IAI46_02780at 599.288 kb on - strand, within IAI46_02780at 599.501 kb on - strand, within IAI46_02780at 599.664 kb on + strandat 599.664 kb on + strandat 599.665 kb on - strandat 599.665 kb on - strandat 599.665 kb on - strandat 599.667 kb on - strandat 599.731 kb on + strandat 599.731 kb on + strandat 599.731 kb on + strandat 599.731 kb on + strandat 599.732 kb on - strandat 599.732 kb on - strandat 599.732 kb on - strandat 599.736 kb on + strandat 599.737 kb on - strandat 599.747 kb on + strandat 599.748 kb on - strandat 599.748 kb on - strandat 599.750 kb on - strandat 599.750 kb on - strandat 599.750 kb on - strandat 599.750 kb on - strandat 599.762 kb on + strandat 599.789 kb on + strandat 599.821 kb on + strandat 599.842 kb on - strandat 599.856 kb on + strandat 599.856 kb on + strandat 599.856 kb on + strandat 599.856 kb on + strandat 599.857 kb on - strandat 599.857 kb on - strandat 599.857 kb on - strandat 599.857 kb on - strandat 599.869 kb on + strandat 599.869 kb on + strandat 599.870 kb on - strandat 599.870 kb on - strandat 599.870 kb on - strandat 600.095 kb on + strand, within IAI46_02785at 600.095 kb on + strand, within IAI46_02785at 600.096 kb on - strand, within IAI46_02785at 600.097 kb on + strand, within IAI46_02785at 600.097 kb on + strand, within IAI46_02785at 600.097 kb on + strand, within IAI46_02785at 600.098 kb on - strand, within IAI46_02785at 600.098 kb on - strand, within IAI46_02785at 600.112 kb on - strand, within IAI46_02785at 600.158 kb on + strand, within IAI46_02785at 600.158 kb on + strand, within IAI46_02785at 600.158 kb on + strand, within IAI46_02785at 600.159 kb on - strand, within IAI46_02785at 600.159 kb on - strand, within IAI46_02785at 600.159 kb on - strand, within IAI46_02785at 600.159 kb on - strand, within IAI46_02785at 600.166 kb on + strand, within IAI46_02785at 600.166 kb on + strand, within IAI46_02785at 600.167 kb on - strand, within IAI46_02785at 600.167 kb on - strand, within IAI46_02785at 600.266 kb on - strand, within IAI46_02785at 600.547 kb on - strand, within IAI46_02785at 600.676 kb on + strandat 600.755 kb on + strandat 600.756 kb on - strandat 600.759 kb on - strandat 600.759 kb on - strandat 600.827 kb on + strandat 600.828 kb on - strandat 600.861 kb on - strandat 600.896 kb on - strandat 600.954 kb on - strandat 601.104 kb on + strand, within IAI46_02790at 601.187 kb on + strand, within IAI46_02790at 601.187 kb on + strand, within IAI46_02790at 601.187 kb on + strand, within IAI46_02790at 601.188 kb on - strand, within IAI46_02790at 601.262 kb on - strand, within IAI46_02790at 601.323 kb on + strand, within IAI46_02790at 601.323 kb on + strand, within IAI46_02790at 601.323 kb on + strand, within IAI46_02790at 601.324 kb on - strand, within IAI46_02790at 601.324 kb on - strand, within IAI46_02790at 601.324 kb on - strand, within IAI46_02790at 601.403 kb on + strand, within IAI46_02790at 601.426 kb on + strand, within IAI46_02790at 601.544 kb on - strand, within IAI46_02790at 601.616 kb on - strandat 601.616 kb on - strandat 601.639 kb on + strandat 601.639 kb on + strandat 601.639 kb on + strandat 601.710 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium acetate 40 uM, aerobic
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599,017 + IAI46_02780 0.47 -0.6
599,018 - IAI46_02780 0.47 -0.1
599,062 + IAI46_02780 0.51 +0.2
599,063 - IAI46_02780 0.51 -1.0
599,077 + IAI46_02780 0.52 -0.7
599,078 - IAI46_02780 0.52 +0.2
599,078 - IAI46_02780 0.52 -0.5
599,078 - IAI46_02780 0.52 +0.2
599,088 + IAI46_02780 0.53 +0.2
599,089 - IAI46_02780 0.53 -0.7
599,089 - IAI46_02780 0.53 -0.5
599,255 + IAI46_02780 0.68 -0.2
599,257 + IAI46_02780 0.68 +0.0
599,258 - IAI46_02780 0.68 +0.3
599,258 - IAI46_02780 0.68 -0.6
599,269 + IAI46_02780 0.69 -1.3
599,269 + IAI46_02780 0.69 -0.5
599,269 + IAI46_02780 0.69 -0.4
599,269 + IAI46_02780 0.69 +0.1
599,269 + IAI46_02780 0.69 +0.6
599,269 + IAI46_02780 0.69 -1.4
599,269 + IAI46_02780 0.69 -0.4
599,270 - IAI46_02780 0.69 -0.6
599,270 - IAI46_02780 0.69 -1.6
599,270 - IAI46_02780 0.69 +0.1
599,270 - IAI46_02780 0.69 +0.6
599,287 + IAI46_02780 0.70 +0.6
599,288 - IAI46_02780 0.71 -1.8
599,501 - IAI46_02780 0.89 -0.0
599,664 + +0.2
599,664 + +1.2
599,665 - +0.6
599,665 - +0.2
599,665 - +0.9
599,667 - +0.2
599,731 + -1.0
599,731 + +0.3
599,731 + -0.5
599,731 + +0.3
599,732 - +0.2
599,732 - -0.1
599,732 - -0.2
599,736 + +0.5
599,737 - -1.2
599,747 + -0.5
599,748 - +0.1
599,748 - +0.6
599,750 - +0.0
599,750 - -0.1
599,750 - +0.5
599,750 - +0.9
599,762 + -0.6
599,789 + -0.7
599,821 + -0.6
599,842 - -0.3
599,856 + -1.5
599,856 + -0.5
599,856 + +0.1
599,856 + -0.1
599,857 - -0.3
599,857 - -1.5
599,857 - +0.2
599,857 - -0.6
599,869 + -0.8
599,869 + -0.6
599,870 - +1.0
599,870 - +0.8
599,870 - +0.3
600,095 + IAI46_02785 0.19 +0.4
600,095 + IAI46_02785 0.19 -0.7
600,096 - IAI46_02785 0.19 -0.2
600,097 + IAI46_02785 0.19 -1.1
600,097 + IAI46_02785 0.19 +0.6
600,097 + IAI46_02785 0.19 +0.2
600,098 - IAI46_02785 0.19 +0.3
600,098 - IAI46_02785 0.19 -2.4
600,112 - IAI46_02785 0.21 -1.3
600,158 + IAI46_02785 0.27 +0.4
600,158 + IAI46_02785 0.27 -0.6
600,158 + IAI46_02785 0.27 +1.0
600,159 - IAI46_02785 0.27 +0.6
600,159 - IAI46_02785 0.27 +0.1
600,159 - IAI46_02785 0.27 +0.6
600,159 - IAI46_02785 0.27 +0.5
600,166 + IAI46_02785 0.28 +0.8
600,166 + IAI46_02785 0.28 +0.2
600,167 - IAI46_02785 0.28 +0.3
600,167 - IAI46_02785 0.28 +0.1
600,266 - IAI46_02785 0.41 -0.3
600,547 - IAI46_02785 0.78 +0.2
600,676 + +0.1
600,755 + +0.7
600,756 - +0.7
600,759 - +0.2
600,759 - -0.2
600,827 + +1.0
600,828 - +0.0
600,861 - -0.0
600,896 - -0.2
600,954 - +0.0
601,104 + IAI46_02790 0.21 -0.1
601,187 + IAI46_02790 0.33 +0.3
601,187 + IAI46_02790 0.33 +0.6
601,187 + IAI46_02790 0.33 +0.1
601,188 - IAI46_02790 0.33 +0.3
601,262 - IAI46_02790 0.43 -0.0
601,323 + IAI46_02790 0.51 +0.2
601,323 + IAI46_02790 0.51 +0.4
601,323 + IAI46_02790 0.51 +1.0
601,324 - IAI46_02790 0.51 +0.4
601,324 - IAI46_02790 0.51 +0.0
601,324 - IAI46_02790 0.51 -0.5
601,403 + IAI46_02790 0.62 -0.1
601,426 + IAI46_02790 0.65 -0.4
601,544 - IAI46_02790 0.81 +0.8
601,616 - +0.3
601,616 - -1.3
601,639 + +0.7
601,639 + -0.6
601,639 + +0.6
601,710 + +1.0

Or see this region's nucleotide sequence