Experiment: Cadmium acetate 40 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_02605 and IAI46_02610 are separated by 1 nucleotides IAI46_02610 and IAI46_02615 are separated by 39 nucleotides IAI46_02615 and IAI46_02620 are separated by 143 nucleotides IAI46_02620 and IAI46_02625 overlap by 8 nucleotides
IAI46_02605: IAI46_02605 - biopolymer transporter ExbD, at 561,279 to 561,686
_02605
IAI46_02610: IAI46_02610 - energy transducer TonB, at 561,688 to 562,440
_02610
IAI46_02615: IAI46_02615 - TonB-dependent receptor, at 562,480 to 564,720
_02615
IAI46_02620: IAI46_02620 - MotA/TolQ/ExbB proton channel family protein, at 564,864 to 565,514
_02620
IAI46_02625: IAI46_02625 - phospholipase, at 565,507 to 566,757
_02625
Position (kb) 562
563
564
565 Strain fitness (log2 ratio) -2
-1
0
1
2 at 561.579 kb on - strand, within IAI46_02605 at 561.691 kb on + strand at 561.691 kb on + strand at 561.691 kb on + strand at 561.691 kb on + strand at 561.691 kb on + strand at 561.691 kb on + strand at 561.692 kb on - strand at 561.692 kb on - strand at 561.692 kb on - strand at 561.692 kb on - strand at 561.692 kb on - strand at 561.692 kb on - strand at 561.692 kb on - strand at 561.799 kb on + strand, within IAI46_02610 at 561.800 kb on - strand, within IAI46_02610 at 562.154 kb on - strand, within IAI46_02610 at 562.300 kb on - strand, within IAI46_02610 at 562.350 kb on + strand, within IAI46_02610 at 562.350 kb on + strand, within IAI46_02610 at 562.451 kb on - strand at 562.507 kb on + strand at 562.507 kb on + strand at 562.508 kb on - strand at 562.585 kb on - strand at 562.708 kb on + strand, within IAI46_02615 at 562.708 kb on + strand, within IAI46_02615 at 562.708 kb on + strand, within IAI46_02615 at 562.709 kb on - strand, within IAI46_02615 at 562.765 kb on + strand, within IAI46_02615 at 562.765 kb on + strand, within IAI46_02615 at 562.765 kb on + strand, within IAI46_02615 at 562.766 kb on - strand, within IAI46_02615 at 562.840 kb on + strand, within IAI46_02615 at 562.850 kb on - strand, within IAI46_02615 at 562.977 kb on + strand, within IAI46_02615 at 563.059 kb on + strand, within IAI46_02615 at 563.059 kb on + strand, within IAI46_02615 at 563.161 kb on + strand, within IAI46_02615 at 563.161 kb on + strand, within IAI46_02615 at 563.161 kb on + strand, within IAI46_02615 at 563.162 kb on - strand, within IAI46_02615 at 563.162 kb on - strand, within IAI46_02615 at 563.162 kb on - strand, within IAI46_02615 at 563.162 kb on - strand, within IAI46_02615 at 563.203 kb on + strand, within IAI46_02615 at 563.204 kb on - strand, within IAI46_02615 at 563.204 kb on - strand, within IAI46_02615 at 563.217 kb on + strand, within IAI46_02615 at 563.227 kb on + strand, within IAI46_02615 at 563.227 kb on + strand, within IAI46_02615 at 563.227 kb on + strand, within IAI46_02615 at 563.227 kb on + strand, within IAI46_02615 at 563.227 kb on + strand, within IAI46_02615 at 563.228 kb on - strand, within IAI46_02615 at 563.228 kb on - strand, within IAI46_02615 at 563.228 kb on - strand, within IAI46_02615 at 563.275 kb on + strand, within IAI46_02615 at 563.321 kb on - strand, within IAI46_02615 at 563.324 kb on - strand, within IAI46_02615 at 563.338 kb on - strand, within IAI46_02615 at 563.416 kb on + strand, within IAI46_02615 at 563.417 kb on - strand, within IAI46_02615 at 563.419 kb on + strand, within IAI46_02615 at 563.419 kb on + strand, within IAI46_02615 at 563.419 kb on + strand, within IAI46_02615 at 563.419 kb on + strand, within IAI46_02615 at 563.419 kb on + strand, within IAI46_02615 at 563.419 kb on + strand, within IAI46_02615 at 563.420 kb on - strand, within IAI46_02615 at 563.422 kb on + strand, within IAI46_02615 at 563.422 kb on + strand, within IAI46_02615 at 563.423 kb on - strand, within IAI46_02615 at 563.497 kb on + strand, within IAI46_02615 at 563.498 kb on - strand, within IAI46_02615 at 563.498 kb on - strand, within IAI46_02615 at 563.498 kb on - strand, within IAI46_02615 at 563.498 kb on - strand, within IAI46_02615 at 563.527 kb on + strand, within IAI46_02615 at 563.527 kb on + strand, within IAI46_02615 at 563.527 kb on + strand, within IAI46_02615 at 563.527 kb on + strand, within IAI46_02615 at 563.528 kb on - strand, within IAI46_02615 at 563.528 kb on - strand, within IAI46_02615 at 563.528 kb on - strand, within IAI46_02615 at 563.528 kb on - strand, within IAI46_02615 at 563.528 kb on - strand, within IAI46_02615 at 563.528 kb on - strand, within IAI46_02615 at 563.528 kb on - strand, within IAI46_02615 at 563.760 kb on + strand, within IAI46_02615 at 563.767 kb on + strand, within IAI46_02615 at 563.767 kb on + strand, within IAI46_02615 at 563.767 kb on + strand, within IAI46_02615 at 563.852 kb on - strand, within IAI46_02615 at 563.852 kb on - strand, within IAI46_02615 at 563.893 kb on + strand, within IAI46_02615 at 563.893 kb on + strand, within IAI46_02615 at 563.894 kb on - strand, within IAI46_02615 at 563.894 kb on - strand, within IAI46_02615 at 563.894 kb on - strand, within IAI46_02615 at 563.894 kb on - strand, within IAI46_02615 at 563.896 kb on - strand, within IAI46_02615 at 563.896 kb on - strand, within IAI46_02615 at 563.923 kb on + strand, within IAI46_02615 at 563.923 kb on + strand, within IAI46_02615 at 563.924 kb on - strand, within IAI46_02615 at 563.924 kb on - strand, within IAI46_02615 at 563.956 kb on + strand, within IAI46_02615 at 563.956 kb on + strand, within IAI46_02615 at 563.986 kb on + strand, within IAI46_02615 at 563.987 kb on - strand, within IAI46_02615 at 563.987 kb on - strand, within IAI46_02615 at 563.987 kb on - strand, within IAI46_02615 at 563.987 kb on - strand, within IAI46_02615 at 563.987 kb on - strand, within IAI46_02615 at 564.022 kb on + strand, within IAI46_02615 at 564.022 kb on + strand, within IAI46_02615 at 564.023 kb on - strand, within IAI46_02615 at 564.031 kb on + strand, within IAI46_02615 at 564.052 kb on - strand, within IAI46_02615 at 564.052 kb on - strand, within IAI46_02615 at 564.112 kb on - strand, within IAI46_02615 at 564.112 kb on - strand, within IAI46_02615 at 564.136 kb on + strand, within IAI46_02615 at 564.137 kb on - strand, within IAI46_02615 at 564.145 kb on + strand, within IAI46_02615 at 564.187 kb on + strand, within IAI46_02615 at 564.201 kb on + strand, within IAI46_02615 at 564.268 kb on + strand, within IAI46_02615 at 564.268 kb on + strand, within IAI46_02615 at 564.269 kb on - strand, within IAI46_02615 at 564.271 kb on + strand, within IAI46_02615 at 564.271 kb on + strand, within IAI46_02615 at 564.271 kb on + strand, within IAI46_02615 at 564.272 kb on - strand, within IAI46_02615 at 564.272 kb on - strand, within IAI46_02615 at 564.280 kb on + strand, within IAI46_02615 at 564.280 kb on + strand, within IAI46_02615 at 564.281 kb on - strand, within IAI46_02615 at 564.281 kb on - strand, within IAI46_02615 at 564.281 kb on - strand, within IAI46_02615 at 564.281 kb on - strand, within IAI46_02615 at 564.286 kb on + strand, within IAI46_02615 at 564.286 kb on + strand, within IAI46_02615 at 564.286 kb on + strand, within IAI46_02615 at 564.286 kb on + strand, within IAI46_02615 at 564.287 kb on - strand, within IAI46_02615 at 564.287 kb on - strand, within IAI46_02615 at 564.287 kb on - strand, within IAI46_02615 at 564.287 kb on - strand, within IAI46_02615 at 564.287 kb on - strand, within IAI46_02615 at 564.287 kb on - strand, within IAI46_02615 at 564.287 kb on - strand, within IAI46_02615 at 564.287 kb on - strand, within IAI46_02615 at 564.384 kb on + strand, within IAI46_02615 at 564.415 kb on + strand, within IAI46_02615 at 564.415 kb on + strand, within IAI46_02615 at 564.419 kb on - strand, within IAI46_02615 at 564.419 kb on - strand, within IAI46_02615 at 564.440 kb on - strand, within IAI46_02615 at 564.440 kb on - strand, within IAI46_02615 at 564.455 kb on - strand, within IAI46_02615 at 564.595 kb on + strand at 564.595 kb on + strand at 564.637 kb on + strand at 564.637 kb on + strand at 564.637 kb on + strand at 564.638 kb on - strand at 564.638 kb on - strand at 564.640 kb on - strand at 564.647 kb on + strand at 564.664 kb on + strand at 564.665 kb on - strand at 564.667 kb on + strand at 564.667 kb on + strand at 564.667 kb on + strand at 564.667 kb on + strand at 564.667 kb on + strand at 564.667 kb on + strand at 564.668 kb on - strand at 564.668 kb on - strand at 564.688 kb on - strand at 564.698 kb on + strand at 564.718 kb on + strand at 564.722 kb on + strand at 564.723 kb on - strand at 564.723 kb on - strand at 564.723 kb on - strand at 564.723 kb on - strand at 564.726 kb on + strand at 564.726 kb on + strand at 564.726 kb on + strand at 564.726 kb on + strand at 564.727 kb on - strand at 564.727 kb on - strand at 564.727 kb on - strand at 564.727 kb on - strand at 564.727 kb on - strand at 564.727 kb on - strand at 564.727 kb on - strand at 564.728 kb on + strand at 564.733 kb on + strand at 564.733 kb on + strand at 564.734 kb on - strand at 564.784 kb on + strand at 564.784 kb on + strand at 564.784 kb on + strand at 564.784 kb on + strand at 564.784 kb on + strand at 564.785 kb on - strand at 564.785 kb on - strand at 564.788 kb on + strand at 564.788 kb on + strand at 564.788 kb on + strand at 564.788 kb on + strand at 564.788 kb on + strand at 564.788 kb on + strand at 564.789 kb on - strand at 564.792 kb on + strand at 564.792 kb on + strand at 564.792 kb on + strand at 564.792 kb on + strand at 564.792 kb on + strand at 564.793 kb on - strand at 564.796 kb on + strand at 564.796 kb on + strand at 564.797 kb on - strand at 564.797 kb on - strand at 564.849 kb on + strand at 564.850 kb on - strand at 564.890 kb on + strand at 564.891 kb on - strand at 564.898 kb on - strand at 564.906 kb on + strand at 564.906 kb on + strand at 564.907 kb on - strand at 564.939 kb on - strand, within IAI46_02620 at 564.947 kb on + strand, within IAI46_02620 at 564.947 kb on + strand, within IAI46_02620 at 564.947 kb on + strand, within IAI46_02620 at 564.954 kb on + strand, within IAI46_02620 at 564.963 kb on + strand, within IAI46_02620 at 564.964 kb on - strand, within IAI46_02620 at 564.964 kb on - strand, within IAI46_02620 at 564.965 kb on + strand, within IAI46_02620 at 564.966 kb on - strand, within IAI46_02620 at 565.146 kb on + strand, within IAI46_02620 at 565.146 kb on + strand, within IAI46_02620 at 565.196 kb on + strand, within IAI46_02620 at 565.196 kb on + strand, within IAI46_02620 at 565.196 kb on + strand, within IAI46_02620 at 565.233 kb on - strand, within IAI46_02620 at 565.326 kb on + strand, within IAI46_02620 at 565.327 kb on - strand, within IAI46_02620 at 565.343 kb on + strand, within IAI46_02620 at 565.407 kb on - strand, within IAI46_02620 at 565.512 kb on + strand at 565.513 kb on - strand at 565.539 kb on - strand at 565.539 kb on - strand at 565.549 kb on + strand at 565.634 kb on - strand, within IAI46_02625 at 565.634 kb on - strand, within IAI46_02625 at 565.634 kb on - strand, within IAI46_02625 at 565.634 kb on - strand, within IAI46_02625
Per-strain Table
Position Strand Gene LocusTag Fraction Cadmium acetate 40 uM, aerobic remove 561,579 - IAI46_02605 0.74 -0.7 561,691 + -0.8 561,691 + -1.4 561,691 + +0.2 561,691 + -0.5 561,691 + -0.2 561,691 + +0.2 561,692 - +0.8 561,692 - -0.2 561,692 - -0.4 561,692 - +1.0 561,692 - +0.0 561,692 - +0.4 561,692 - +0.1 561,799 + IAI46_02610 0.15 +0.3 561,800 - IAI46_02610 0.15 -0.1 562,154 - IAI46_02610 0.62 +2.0 562,300 - IAI46_02610 0.81 +0.0 562,350 + IAI46_02610 0.88 -0.6 562,350 + IAI46_02610 0.88 +0.3 562,451 - +1.0 562,507 + +0.1 562,507 + -0.8 562,508 - +0.0 562,585 - -0.3 562,708 + IAI46_02615 0.10 +1.5 562,708 + IAI46_02615 0.10 +0.0 562,708 + IAI46_02615 0.10 +0.6 562,709 - IAI46_02615 0.10 +0.6 562,765 + IAI46_02615 0.13 +0.0 562,765 + IAI46_02615 0.13 +0.3 562,765 + IAI46_02615 0.13 -0.2 562,766 - IAI46_02615 0.13 +0.0 562,840 + IAI46_02615 0.16 +0.1 562,850 - IAI46_02615 0.17 +0.1 562,977 + IAI46_02615 0.22 -0.9 563,059 + IAI46_02615 0.26 +0.6 563,059 + IAI46_02615 0.26 -0.2 563,161 + IAI46_02615 0.30 -1.1 563,161 + IAI46_02615 0.30 -1.3 563,161 + IAI46_02615 0.30 +0.7 563,162 - IAI46_02615 0.30 +0.3 563,162 - IAI46_02615 0.30 -0.0 563,162 - IAI46_02615 0.30 +0.4 563,162 - IAI46_02615 0.30 +0.3 563,203 + IAI46_02615 0.32 +1.0 563,204 - IAI46_02615 0.32 -0.4 563,204 - IAI46_02615 0.32 -0.4 563,217 + IAI46_02615 0.33 +1.6 563,227 + IAI46_02615 0.33 +0.4 563,227 + IAI46_02615 0.33 +0.4 563,227 + IAI46_02615 0.33 +0.4 563,227 + IAI46_02615 0.33 +0.6 563,227 + IAI46_02615 0.33 +0.5 563,228 - IAI46_02615 0.33 +1.0 563,228 - IAI46_02615 0.33 -0.0 563,228 - IAI46_02615 0.33 +0.9 563,275 + IAI46_02615 0.35 +0.8 563,321 - IAI46_02615 0.38 -1.1 563,324 - IAI46_02615 0.38 -0.0 563,338 - IAI46_02615 0.38 +0.7 563,416 + IAI46_02615 0.42 -0.4 563,417 - IAI46_02615 0.42 +0.1 563,419 + IAI46_02615 0.42 -2.6 563,419 + IAI46_02615 0.42 +0.3 563,419 + IAI46_02615 0.42 -0.0 563,419 + IAI46_02615 0.42 +0.6 563,419 + IAI46_02615 0.42 +0.4 563,419 + IAI46_02615 0.42 -0.1 563,420 - IAI46_02615 0.42 -0.1 563,422 + IAI46_02615 0.42 -0.2 563,422 + IAI46_02615 0.42 -0.0 563,423 - IAI46_02615 0.42 +0.4 563,497 + IAI46_02615 0.45 +0.6 563,498 - IAI46_02615 0.45 -0.0 563,498 - IAI46_02615 0.45 -0.4 563,498 - IAI46_02615 0.45 -0.1 563,498 - IAI46_02615 0.45 -0.2 563,527 + IAI46_02615 0.47 +0.4 563,527 + IAI46_02615 0.47 -1.6 563,527 + IAI46_02615 0.47 -0.3 563,527 + IAI46_02615 0.47 -0.3 563,528 - IAI46_02615 0.47 -0.3 563,528 - IAI46_02615 0.47 +0.2 563,528 - IAI46_02615 0.47 +1.5 563,528 - IAI46_02615 0.47 -2.1 563,528 - IAI46_02615 0.47 -0.1 563,528 - IAI46_02615 0.47 -0.1 563,528 - IAI46_02615 0.47 +0.8 563,760 + IAI46_02615 0.57 -0.0 563,767 + IAI46_02615 0.57 -0.2 563,767 + IAI46_02615 0.57 +0.1 563,767 + IAI46_02615 0.57 +0.0 563,852 - IAI46_02615 0.61 +0.5 563,852 - IAI46_02615 0.61 -1.4 563,893 + IAI46_02615 0.63 -0.6 563,893 + IAI46_02615 0.63 -0.1 563,894 - IAI46_02615 0.63 -1.5 563,894 - IAI46_02615 0.63 +0.3 563,894 - IAI46_02615 0.63 -0.1 563,894 - IAI46_02615 0.63 +0.5 563,896 - IAI46_02615 0.63 +0.1 563,896 - IAI46_02615 0.63 +0.7 563,923 + IAI46_02615 0.64 -0.7 563,923 + IAI46_02615 0.64 +0.1 563,924 - IAI46_02615 0.64 +0.4 563,924 - IAI46_02615 0.64 +0.6 563,956 + IAI46_02615 0.66 -0.5 563,956 + IAI46_02615 0.66 +0.1 563,986 + IAI46_02615 0.67 +0.1 563,987 - IAI46_02615 0.67 +0.5 563,987 - IAI46_02615 0.67 -0.6 563,987 - IAI46_02615 0.67 -0.3 563,987 - IAI46_02615 0.67 +0.6 563,987 - IAI46_02615 0.67 -0.4 564,022 + IAI46_02615 0.69 -0.5 564,022 + IAI46_02615 0.69 -0.3 564,023 - IAI46_02615 0.69 +0.4 564,031 + IAI46_02615 0.69 +0.7 564,052 - IAI46_02615 0.70 +1.1 564,052 - IAI46_02615 0.70 +0.3 564,112 - IAI46_02615 0.73 -0.4 564,112 - IAI46_02615 0.73 -0.9 564,136 + IAI46_02615 0.74 +2.2 564,137 - IAI46_02615 0.74 +0.5 564,145 + IAI46_02615 0.74 +0.0 564,187 + IAI46_02615 0.76 -0.2 564,201 + IAI46_02615 0.77 +0.3 564,268 + IAI46_02615 0.80 +1.1 564,268 + IAI46_02615 0.80 -0.1 564,269 - IAI46_02615 0.80 +1.8 564,271 + IAI46_02615 0.80 -0.3 564,271 + IAI46_02615 0.80 +2.1 564,271 + IAI46_02615 0.80 -0.9 564,272 - IAI46_02615 0.80 -1.1 564,272 - IAI46_02615 0.80 -0.3 564,280 + IAI46_02615 0.80 -0.2 564,280 + IAI46_02615 0.80 +0.1 564,281 - IAI46_02615 0.80 -0.6 564,281 - IAI46_02615 0.80 -0.1 564,281 - IAI46_02615 0.80 +0.7 564,281 - IAI46_02615 0.80 +0.7 564,286 + IAI46_02615 0.81 +0.1 564,286 + IAI46_02615 0.81 -0.0 564,286 + IAI46_02615 0.81 +0.2 564,286 + IAI46_02615 0.81 -1.7 564,287 - IAI46_02615 0.81 +0.1 564,287 - IAI46_02615 0.81 -0.2 564,287 - IAI46_02615 0.81 +0.1 564,287 - IAI46_02615 0.81 +0.8 564,287 - IAI46_02615 0.81 +0.2 564,287 - IAI46_02615 0.81 -0.2 564,287 - IAI46_02615 0.81 -0.7 564,287 - IAI46_02615 0.81 -0.1 564,384 + IAI46_02615 0.85 +0.3 564,415 + IAI46_02615 0.86 +0.0 564,415 + IAI46_02615 0.86 -0.1 564,419 - IAI46_02615 0.87 +0.1 564,419 - IAI46_02615 0.87 +0.1 564,440 - IAI46_02615 0.87 +0.9 564,440 - IAI46_02615 0.87 +0.5 564,455 - IAI46_02615 0.88 -0.2 564,595 + +0.4 564,595 + -0.2 564,637 + -0.1 564,637 + -0.9 564,637 + +0.3 564,638 - +0.6 564,638 - -0.3 564,640 - +0.3 564,647 + +0.0 564,664 + +0.6 564,665 - -0.2 564,667 + -0.7 564,667 + +0.1 564,667 + -0.1 564,667 + -0.6 564,667 + +0.9 564,667 + +0.3 564,668 - -0.1 564,668 - +0.6 564,688 - +0.4 564,698 + -0.1 564,718 + -0.7 564,722 + +0.1 564,723 - +0.6 564,723 - -0.2 564,723 - +0.7 564,723 - +0.0 564,726 + +0.2 564,726 + +0.4 564,726 + -0.7 564,726 + +0.3 564,727 - +0.3 564,727 - +0.1 564,727 - +0.4 564,727 - -0.4 564,727 - +0.2 564,727 - +0.2 564,727 - -0.3 564,728 + -0.5 564,733 + -0.3 564,733 + -1.8 564,734 - +0.9 564,784 + -0.2 564,784 + -1.4 564,784 + -0.6 564,784 + +0.1 564,784 + +0.1 564,785 - +0.0 564,785 - +0.1 564,788 + +1.0 564,788 + -0.1 564,788 + -0.2 564,788 + +0.1 564,788 + -0.4 564,788 + +0.7 564,789 - -0.2 564,792 + -0.1 564,792 + -0.2 564,792 + -0.1 564,792 + -1.5 564,792 + -2.5 564,793 - -0.3 564,796 + -0.0 564,796 + -0.0 564,797 - +0.3 564,797 - +0.3 564,849 + -0.2 564,850 - +0.7 564,890 + -0.2 564,891 - -0.9 564,898 - +0.5 564,906 + +0.2 564,906 + -0.2 564,907 - +0.8 564,939 - IAI46_02620 0.12 -0.1 564,947 + IAI46_02620 0.13 -1.1 564,947 + IAI46_02620 0.13 +0.2 564,947 + IAI46_02620 0.13 +0.7 564,954 + IAI46_02620 0.14 +0.6 564,963 + IAI46_02620 0.15 -0.5 564,964 - IAI46_02620 0.15 +0.1 564,964 - IAI46_02620 0.15 +0.4 564,965 + IAI46_02620 0.16 -0.5 564,966 - IAI46_02620 0.16 -0.7 565,146 + IAI46_02620 0.43 +1.0 565,146 + IAI46_02620 0.43 -0.4 565,196 + IAI46_02620 0.51 +0.7 565,196 + IAI46_02620 0.51 -0.6 565,196 + IAI46_02620 0.51 -1.2 565,233 - IAI46_02620 0.57 -0.3 565,326 + IAI46_02620 0.71 -0.1 565,327 - IAI46_02620 0.71 -0.8 565,343 + IAI46_02620 0.74 +0.9 565,407 - IAI46_02620 0.83 -0.1 565,512 + -0.4 565,513 - +0.7 565,539 - -1.1 565,539 - -0.4 565,549 + +0.6 565,634 - IAI46_02625 0.10 -0.7 565,634 - IAI46_02625 0.10 -0.5 565,634 - IAI46_02625 0.10 -0.5 565,634 - IAI46_02625 0.10 -0.8
Or see this region's nucleotide sequence