Strain Fitness in Serratia liquefaciens MT49 around IAI46_02455

Experiment: Cadmium acetate 40 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_02450 and IAI46_02455 are separated by 76 nucleotidesIAI46_02455 and IAI46_02460 overlap by 4 nucleotides IAI46_02450: IAI46_02450 - AraC family transcriptional regulator, at 526,020 to 526,826 _02450 IAI46_02455: IAI46_02455 - hypothetical protein, at 526,903 to 527,574 _02455 IAI46_02460: IAI46_02460 - LysE family translocator, at 527,571 to 528,182 _02460 Position (kb) 526 527 528Strain fitness (log2 ratio) -1 0 1 2at 525.925 kb on + strandat 525.954 kb on + strandat 525.954 kb on + strandat 525.955 kb on - strandat 525.955 kb on - strandat 525.955 kb on - strandat 525.996 kb on + strandat 525.996 kb on + strandat 525.996 kb on + strandat 525.996 kb on + strandat 526.000 kb on + strandat 526.000 kb on + strandat 526.000 kb on + strandat 526.000 kb on + strandat 526.001 kb on - strandat 526.007 kb on - strandat 526.015 kb on - strandat 526.040 kb on + strandat 526.066 kb on + strandat 526.066 kb on + strandat 526.067 kb on - strandat 526.067 kb on - strandat 526.067 kb on - strandat 526.067 kb on - strandat 526.109 kb on + strand, within IAI46_02450at 526.109 kb on + strand, within IAI46_02450at 526.109 kb on + strand, within IAI46_02450at 526.110 kb on - strand, within IAI46_02450at 526.110 kb on - strand, within IAI46_02450at 526.135 kb on + strand, within IAI46_02450at 526.136 kb on - strand, within IAI46_02450at 526.136 kb on - strand, within IAI46_02450at 526.200 kb on - strand, within IAI46_02450at 526.200 kb on - strand, within IAI46_02450at 526.200 kb on - strand, within IAI46_02450at 526.205 kb on + strand, within IAI46_02450at 526.205 kb on + strand, within IAI46_02450at 526.211 kb on + strand, within IAI46_02450at 526.243 kb on + strand, within IAI46_02450at 526.247 kb on + strand, within IAI46_02450at 526.381 kb on + strand, within IAI46_02450at 526.384 kb on - strand, within IAI46_02450at 526.403 kb on + strand, within IAI46_02450at 526.541 kb on + strand, within IAI46_02450at 526.541 kb on + strand, within IAI46_02450at 526.541 kb on + strand, within IAI46_02450at 526.542 kb on - strand, within IAI46_02450at 526.561 kb on + strand, within IAI46_02450at 526.561 kb on + strand, within IAI46_02450at 526.562 kb on - strand, within IAI46_02450at 526.562 kb on - strand, within IAI46_02450at 526.575 kb on + strand, within IAI46_02450at 526.575 kb on + strand, within IAI46_02450at 526.576 kb on - strand, within IAI46_02450at 526.615 kb on + strand, within IAI46_02450at 526.615 kb on + strand, within IAI46_02450at 526.638 kb on - strand, within IAI46_02450at 526.645 kb on + strand, within IAI46_02450at 526.646 kb on - strand, within IAI46_02450at 526.659 kb on + strand, within IAI46_02450at 526.659 kb on + strand, within IAI46_02450at 526.660 kb on - strand, within IAI46_02450at 526.660 kb on - strand, within IAI46_02450at 526.660 kb on - strand, within IAI46_02450at 526.660 kb on - strand, within IAI46_02450at 526.665 kb on - strand, within IAI46_02450at 526.665 kb on - strand, within IAI46_02450at 526.678 kb on + strand, within IAI46_02450at 526.687 kb on + strand, within IAI46_02450at 526.696 kb on + strand, within IAI46_02450at 526.696 kb on + strand, within IAI46_02450at 526.696 kb on + strand, within IAI46_02450at 526.697 kb on - strand, within IAI46_02450at 526.709 kb on + strand, within IAI46_02450at 526.709 kb on + strand, within IAI46_02450at 526.709 kb on + strand, within IAI46_02450at 526.710 kb on - strand, within IAI46_02450at 526.710 kb on - strand, within IAI46_02450at 526.710 kb on - strand, within IAI46_02450at 526.710 kb on - strand, within IAI46_02450at 526.710 kb on - strand, within IAI46_02450at 526.710 kb on - strand, within IAI46_02450at 526.710 kb on - strand, within IAI46_02450at 526.760 kb on + strandat 526.781 kb on + strandat 526.781 kb on + strandat 526.781 kb on + strandat 526.781 kb on + strandat 526.782 kb on - strandat 526.782 kb on - strandat 526.785 kb on + strandat 526.785 kb on + strandat 526.794 kb on - strandat 526.806 kb on + strandat 526.806 kb on + strandat 526.807 kb on - strandat 526.812 kb on - strandat 526.812 kb on - strandat 526.819 kb on + strandat 526.850 kb on + strandat 526.910 kb on + strandat 526.911 kb on - strandat 526.911 kb on - strandat 526.915 kb on + strandat 526.915 kb on + strandat 526.961 kb on + strandat 526.961 kb on + strandat 526.961 kb on + strandat 526.961 kb on + strandat 526.962 kb on - strandat 526.962 kb on - strandat 526.962 kb on - strandat 526.962 kb on - strandat 526.965 kb on + strandat 526.965 kb on + strandat 526.965 kb on + strandat 526.965 kb on + strandat 526.965 kb on + strandat 526.977 kb on + strand, within IAI46_02455at 526.978 kb on - strand, within IAI46_02455at 527.025 kb on + strand, within IAI46_02455at 527.096 kb on - strand, within IAI46_02455at 527.163 kb on + strand, within IAI46_02455at 527.163 kb on + strand, within IAI46_02455at 527.163 kb on + strand, within IAI46_02455at 527.196 kb on + strand, within IAI46_02455at 527.196 kb on + strand, within IAI46_02455at 527.208 kb on + strand, within IAI46_02455at 527.209 kb on - strand, within IAI46_02455at 527.232 kb on + strand, within IAI46_02455at 527.232 kb on + strand, within IAI46_02455at 527.232 kb on + strand, within IAI46_02455at 527.233 kb on - strand, within IAI46_02455at 527.234 kb on + strand, within IAI46_02455at 527.235 kb on - strand, within IAI46_02455at 527.305 kb on + strand, within IAI46_02455at 527.305 kb on + strand, within IAI46_02455at 527.305 kb on + strand, within IAI46_02455at 527.306 kb on - strand, within IAI46_02455at 527.306 kb on - strand, within IAI46_02455at 527.308 kb on + strand, within IAI46_02455at 527.309 kb on - strand, within IAI46_02455at 527.309 kb on - strand, within IAI46_02455at 527.309 kb on - strand, within IAI46_02455at 527.309 kb on - strand, within IAI46_02455at 527.367 kb on + strand, within IAI46_02455at 527.367 kb on + strand, within IAI46_02455at 527.367 kb on + strand, within IAI46_02455at 527.367 kb on + strand, within IAI46_02455at 527.368 kb on - strand, within IAI46_02455at 527.490 kb on + strand, within IAI46_02455at 527.490 kb on + strand, within IAI46_02455at 527.491 kb on - strand, within IAI46_02455at 527.493 kb on - strand, within IAI46_02455at 527.493 kb on - strand, within IAI46_02455at 527.493 kb on - strand, within IAI46_02455at 527.493 kb on - strand, within IAI46_02455at 527.508 kb on + strandat 527.509 kb on - strandat 527.509 kb on - strandat 527.509 kb on - strandat 527.517 kb on + strandat 527.518 kb on - strandat 527.525 kb on + strandat 527.587 kb on + strandat 527.587 kb on + strandat 527.588 kb on - strandat 527.591 kb on + strandat 527.592 kb on - strandat 527.592 kb on - strandat 527.604 kb on - strandat 527.621 kb on + strandat 527.621 kb on + strandat 527.634 kb on + strand, within IAI46_02460at 527.635 kb on - strand, within IAI46_02460at 527.635 kb on - strand, within IAI46_02460at 527.636 kb on + strand, within IAI46_02460at 527.636 kb on + strand, within IAI46_02460at 527.636 kb on + strand, within IAI46_02460at 527.636 kb on + strand, within IAI46_02460at 527.637 kb on - strand, within IAI46_02460at 527.671 kb on + strand, within IAI46_02460at 527.675 kb on + strand, within IAI46_02460at 527.747 kb on - strand, within IAI46_02460at 527.747 kb on - strand, within IAI46_02460at 527.753 kb on - strand, within IAI46_02460at 527.756 kb on + strand, within IAI46_02460at 527.756 kb on + strand, within IAI46_02460at 527.756 kb on + strand, within IAI46_02460at 528.055 kb on - strand, within IAI46_02460at 528.358 kb on + strandat 528.444 kb on + strandat 528.444 kb on + strandat 528.444 kb on + strandat 528.445 kb on - strandat 528.446 kb on + strandat 528.446 kb on + strandat 528.447 kb on - strandat 528.453 kb on + strandat 528.565 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium acetate 40 uM, aerobic
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525,925 + -0.3
525,954 + -0.0
525,954 + +0.1
525,955 - +1.1
525,955 - +1.4
525,955 - +0.9
525,996 + -0.0
525,996 + -0.5
525,996 + +0.5
525,996 + -0.1
526,000 + -0.5
526,000 + +0.2
526,000 + +0.0
526,000 + +0.4
526,001 - -0.4
526,007 - -0.3
526,015 - +0.3
526,040 + +0.5
526,066 + -0.1
526,066 + +0.2
526,067 - -0.4
526,067 - +0.1
526,067 - +0.4
526,067 - -0.5
526,109 + IAI46_02450 0.11 +0.5
526,109 + IAI46_02450 0.11 +0.5
526,109 + IAI46_02450 0.11 -0.2
526,110 - IAI46_02450 0.11 +0.5
526,110 - IAI46_02450 0.11 +0.4
526,135 + IAI46_02450 0.14 -0.1
526,136 - IAI46_02450 0.14 +0.6
526,136 - IAI46_02450 0.14 +0.4
526,200 - IAI46_02450 0.22 +0.5
526,200 - IAI46_02450 0.22 +0.4
526,200 - IAI46_02450 0.22 +0.5
526,205 + IAI46_02450 0.23 +0.1
526,205 + IAI46_02450 0.23 +0.0
526,211 + IAI46_02450 0.24 -0.2
526,243 + IAI46_02450 0.28 +0.5
526,247 + IAI46_02450 0.28 +0.5
526,381 + IAI46_02450 0.45 -0.1
526,384 - IAI46_02450 0.45 +0.1
526,403 + IAI46_02450 0.47 -1.5
526,541 + IAI46_02450 0.65 -0.1
526,541 + IAI46_02450 0.65 +0.6
526,541 + IAI46_02450 0.65 +0.1
526,542 - IAI46_02450 0.65 -0.3
526,561 + IAI46_02450 0.67 -0.3
526,561 + IAI46_02450 0.67 +0.7
526,562 - IAI46_02450 0.67 +1.1
526,562 - IAI46_02450 0.67 +0.0
526,575 + IAI46_02450 0.69 -0.6
526,575 + IAI46_02450 0.69 +0.1
526,576 - IAI46_02450 0.69 +2.6
526,615 + IAI46_02450 0.74 +1.0
526,615 + IAI46_02450 0.74 -0.1
526,638 - IAI46_02450 0.77 -0.1
526,645 + IAI46_02450 0.77 +0.3
526,646 - IAI46_02450 0.78 +0.0
526,659 + IAI46_02450 0.79 -1.1
526,659 + IAI46_02450 0.79 -0.4
526,660 - IAI46_02450 0.79 -0.4
526,660 - IAI46_02450 0.79 -0.5
526,660 - IAI46_02450 0.79 +1.6
526,660 - IAI46_02450 0.79 -0.9
526,665 - IAI46_02450 0.80 +0.2
526,665 - IAI46_02450 0.80 +0.2
526,678 + IAI46_02450 0.82 -1.6
526,687 + IAI46_02450 0.83 +0.1
526,696 + IAI46_02450 0.84 +0.6
526,696 + IAI46_02450 0.84 -0.5
526,696 + IAI46_02450 0.84 +0.4
526,697 - IAI46_02450 0.84 -0.9
526,709 + IAI46_02450 0.85 +0.1
526,709 + IAI46_02450 0.85 +0.2
526,709 + IAI46_02450 0.85 +0.2
526,710 - IAI46_02450 0.86 +1.1
526,710 - IAI46_02450 0.86 +0.5
526,710 - IAI46_02450 0.86 -0.4
526,710 - IAI46_02450 0.86 +1.1
526,710 - IAI46_02450 0.86 +0.6
526,710 - IAI46_02450 0.86 -0.6
526,710 - IAI46_02450 0.86 +1.3
526,760 + -0.1
526,781 + +0.6
526,781 + -0.2
526,781 + -0.5
526,781 + +0.8
526,782 - +0.6
526,782 - -0.1
526,785 + +0.1
526,785 + +1.1
526,794 - +0.4
526,806 + +0.7
526,806 + +1.1
526,807 - -0.0
526,812 - +0.7
526,812 - +0.5
526,819 + +0.2
526,850 + +0.2
526,910 + +0.3
526,911 - +0.0
526,911 - +0.1
526,915 + -0.2
526,915 + +0.6
526,961 + +0.4
526,961 + +0.7
526,961 + +0.6
526,961 + +0.2
526,962 - -0.2
526,962 - -0.1
526,962 - +2.3
526,962 - +0.8
526,965 + +0.5
526,965 + +0.8
526,965 + -0.1
526,965 + +0.4
526,965 + +0.5
526,977 + IAI46_02455 0.11 +0.3
526,978 - IAI46_02455 0.11 +1.3
527,025 + IAI46_02455 0.18 -1.4
527,096 - IAI46_02455 0.29 +0.6
527,163 + IAI46_02455 0.39 +1.2
527,163 + IAI46_02455 0.39 +0.5
527,163 + IAI46_02455 0.39 -1.2
527,196 + IAI46_02455 0.44 -0.4
527,196 + IAI46_02455 0.44 +1.3
527,208 + IAI46_02455 0.45 -0.1
527,209 - IAI46_02455 0.46 +0.6
527,232 + IAI46_02455 0.49 +0.5
527,232 + IAI46_02455 0.49 +0.6
527,232 + IAI46_02455 0.49 -0.3
527,233 - IAI46_02455 0.49 -0.3
527,234 + IAI46_02455 0.49 -1.1
527,235 - IAI46_02455 0.49 +0.9
527,305 + IAI46_02455 0.60 -0.1
527,305 + IAI46_02455 0.60 +0.8
527,305 + IAI46_02455 0.60 +1.1
527,306 - IAI46_02455 0.60 -0.3
527,306 - IAI46_02455 0.60 -0.2
527,308 + IAI46_02455 0.60 -0.1
527,309 - IAI46_02455 0.60 +1.0
527,309 - IAI46_02455 0.60 +1.0
527,309 - IAI46_02455 0.60 -0.2
527,309 - IAI46_02455 0.60 +0.1
527,367 + IAI46_02455 0.69 -0.3
527,367 + IAI46_02455 0.69 +0.2
527,367 + IAI46_02455 0.69 +0.1
527,367 + IAI46_02455 0.69 +0.7
527,368 - IAI46_02455 0.69 -0.5
527,490 + IAI46_02455 0.87 +0.9
527,490 + IAI46_02455 0.87 -0.6
527,491 - IAI46_02455 0.88 +1.2
527,493 - IAI46_02455 0.88 +0.3
527,493 - IAI46_02455 0.88 -0.2
527,493 - IAI46_02455 0.88 -0.0
527,493 - IAI46_02455 0.88 +0.4
527,508 + +0.1
527,509 - +0.3
527,509 - +1.8
527,509 - -0.5
527,517 + +0.2
527,518 - -0.3
527,525 + +0.2
527,587 + -0.1
527,587 + -0.2
527,588 - -0.2
527,591 + +0.3
527,592 - +0.1
527,592 - +0.3
527,604 - -0.1
527,621 + +0.4
527,621 + +1.0
527,634 + IAI46_02460 0.10 +0.4
527,635 - IAI46_02460 0.10 -0.4
527,635 - IAI46_02460 0.10 +0.8
527,636 + IAI46_02460 0.11 +0.7
527,636 + IAI46_02460 0.11 +0.1
527,636 + IAI46_02460 0.11 +0.8
527,636 + IAI46_02460 0.11 +0.0
527,637 - IAI46_02460 0.11 +0.4
527,671 + IAI46_02460 0.16 -0.5
527,675 + IAI46_02460 0.17 +0.6
527,747 - IAI46_02460 0.29 -0.1
527,747 - IAI46_02460 0.29 -0.5
527,753 - IAI46_02460 0.30 -0.3
527,756 + IAI46_02460 0.30 +0.4
527,756 + IAI46_02460 0.30 +0.7
527,756 + IAI46_02460 0.30 -0.5
528,055 - IAI46_02460 0.79 +0.8
528,358 + -1.1
528,444 + -0.7
528,444 + +0.1
528,444 + +1.4
528,445 - +0.2
528,446 + +0.3
528,446 + -0.0
528,447 - +0.2
528,453 + -1.3
528,565 - +0.3

Or see this region's nucleotide sequence