Strain Fitness in Serratia liquefaciens MT49 around IAI46_02290

Experiment: Cadmium acetate 40 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_02285 and IAI46_02290 are separated by 236 nucleotidesIAI46_02290 and IAI46_02295 are separated by 19 nucleotides IAI46_02285: IAI46_02285 - ABC transporter substrate-binding protein, at 482,226 to 483,182 _02285 IAI46_02290: IAI46_02290 - ABC transporter ATP-binding protein, at 483,419 to 484,207 _02290 IAI46_02295: IAI46_02295 - amino acid deaminase, at 484,227 to 485,468 _02295 Position (kb) 483 484 485Strain fitness (log2 ratio) -3 -2 -1 0 1at 482.420 kb on - strand, within IAI46_02285at 482.499 kb on - strand, within IAI46_02285at 482.531 kb on + strand, within IAI46_02285at 482.551 kb on + strand, within IAI46_02285at 482.590 kb on + strand, within IAI46_02285at 482.635 kb on + strand, within IAI46_02285at 482.717 kb on + strand, within IAI46_02285at 482.848 kb on + strand, within IAI46_02285at 482.849 kb on - strand, within IAI46_02285at 482.908 kb on + strand, within IAI46_02285at 482.999 kb on + strand, within IAI46_02285at 482.999 kb on + strand, within IAI46_02285at 483.000 kb on - strand, within IAI46_02285at 483.038 kb on + strand, within IAI46_02285at 483.038 kb on + strand, within IAI46_02285at 483.038 kb on + strand, within IAI46_02285at 483.039 kb on - strand, within IAI46_02285at 483.039 kb on - strand, within IAI46_02285at 483.039 kb on - strand, within IAI46_02285at 483.044 kb on + strand, within IAI46_02285at 483.045 kb on - strand, within IAI46_02285at 483.284 kb on + strandat 483.349 kb on + strandat 483.349 kb on + strandat 483.350 kb on - strandat 483.379 kb on + strandat 483.380 kb on - strandat 483.380 kb on - strandat 483.420 kb on + strandat 483.421 kb on - strandat 483.421 kb on - strandat 483.544 kb on - strand, within IAI46_02290at 483.691 kb on + strand, within IAI46_02290at 483.691 kb on + strand, within IAI46_02290at 483.710 kb on + strand, within IAI46_02290at 483.711 kb on - strand, within IAI46_02290at 483.836 kb on + strand, within IAI46_02290at 483.837 kb on - strand, within IAI46_02290at 483.837 kb on - strand, within IAI46_02290at 483.897 kb on + strand, within IAI46_02290at 483.897 kb on + strand, within IAI46_02290at 483.898 kb on - strand, within IAI46_02290at 483.898 kb on - strand, within IAI46_02290at 483.911 kb on - strand, within IAI46_02290at 483.978 kb on - strand, within IAI46_02290at 483.987 kb on - strand, within IAI46_02290at 484.043 kb on + strand, within IAI46_02290at 484.052 kb on + strand, within IAI46_02290at 484.091 kb on - strand, within IAI46_02290at 484.112 kb on - strand, within IAI46_02290at 484.251 kb on + strandat 484.251 kb on + strandat 484.251 kb on + strandat 484.251 kb on + strandat 484.251 kb on + strandat 484.252 kb on - strandat 484.261 kb on + strandat 484.261 kb on + strandat 484.261 kb on + strandat 484.261 kb on + strandat 484.261 kb on + strandat 484.261 kb on + strandat 484.261 kb on + strandat 484.262 kb on - strandat 484.262 kb on - strandat 484.262 kb on - strandat 484.265 kb on + strandat 484.265 kb on + strandat 484.335 kb on + strandat 484.335 kb on + strandat 484.335 kb on + strandat 484.336 kb on - strandat 484.336 kb on - strandat 484.336 kb on - strandat 484.336 kb on - strandat 484.337 kb on + strandat 484.338 kb on - strandat 484.374 kb on + strand, within IAI46_02295at 484.374 kb on + strand, within IAI46_02295at 484.375 kb on - strand, within IAI46_02295at 484.375 kb on - strand, within IAI46_02295at 484.375 kb on - strand, within IAI46_02295at 484.375 kb on - strand, within IAI46_02295at 484.375 kb on - strand, within IAI46_02295at 484.552 kb on - strand, within IAI46_02295at 484.572 kb on + strand, within IAI46_02295at 484.597 kb on + strand, within IAI46_02295at 484.597 kb on + strand, within IAI46_02295at 484.597 kb on + strand, within IAI46_02295at 484.597 kb on + strand, within IAI46_02295at 484.597 kb on + strand, within IAI46_02295at 484.598 kb on - strand, within IAI46_02295at 484.598 kb on - strand, within IAI46_02295at 484.602 kb on - strand, within IAI46_02295at 484.602 kb on - strand, within IAI46_02295at 484.660 kb on + strand, within IAI46_02295at 484.660 kb on + strand, within IAI46_02295at 484.661 kb on - strand, within IAI46_02295at 484.735 kb on + strand, within IAI46_02295at 484.735 kb on + strand, within IAI46_02295at 484.735 kb on + strand, within IAI46_02295at 484.736 kb on - strand, within IAI46_02295at 484.736 kb on - strand, within IAI46_02295at 484.736 kb on - strand, within IAI46_02295at 484.880 kb on - strand, within IAI46_02295at 484.880 kb on - strand, within IAI46_02295at 484.880 kb on - strand, within IAI46_02295at 484.880 kb on - strand, within IAI46_02295at 484.880 kb on - strand, within IAI46_02295at 484.881 kb on + strand, within IAI46_02295at 484.881 kb on + strand, within IAI46_02295at 484.882 kb on - strand, within IAI46_02295at 484.882 kb on - strand, within IAI46_02295at 484.882 kb on - strand, within IAI46_02295at 485.123 kb on + strand, within IAI46_02295

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Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium acetate 40 uM, aerobic
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482,420 - IAI46_02285 0.20 +1.0
482,499 - IAI46_02285 0.29 -0.1
482,531 + IAI46_02285 0.32 +1.4
482,551 + IAI46_02285 0.34 +0.6
482,590 + IAI46_02285 0.38 +1.0
482,635 + IAI46_02285 0.43 +0.2
482,717 + IAI46_02285 0.51 -0.2
482,848 + IAI46_02285 0.65 -0.3
482,849 - IAI46_02285 0.65 -0.5
482,908 + IAI46_02285 0.71 -0.2
482,999 + IAI46_02285 0.81 -0.1
482,999 + IAI46_02285 0.81 -0.7
483,000 - IAI46_02285 0.81 +0.1
483,038 + IAI46_02285 0.85 -0.5
483,038 + IAI46_02285 0.85 -0.2
483,038 + IAI46_02285 0.85 -0.6
483,039 - IAI46_02285 0.85 +0.6
483,039 - IAI46_02285 0.85 +0.6
483,039 - IAI46_02285 0.85 +1.1
483,044 + IAI46_02285 0.85 -1.7
483,045 - IAI46_02285 0.86 +0.7
483,284 + +0.7
483,349 + +0.7
483,349 + -0.2
483,350 - +0.2
483,379 + -0.5
483,380 - +0.4
483,380 - +0.3
483,420 + +1.1
483,421 - +0.5
483,421 - -0.0
483,544 - IAI46_02290 0.16 -0.5
483,691 + IAI46_02290 0.34 +0.3
483,691 + IAI46_02290 0.34 -0.1
483,710 + IAI46_02290 0.37 -0.1
483,711 - IAI46_02290 0.37 -0.4
483,836 + IAI46_02290 0.53 +1.1
483,837 - IAI46_02290 0.53 -0.6
483,837 - IAI46_02290 0.53 -0.5
483,897 + IAI46_02290 0.61 -0.8
483,897 + IAI46_02290 0.61 -1.0
483,898 - IAI46_02290 0.61 +0.1
483,898 - IAI46_02290 0.61 +0.4
483,911 - IAI46_02290 0.62 -0.6
483,978 - IAI46_02290 0.71 +0.1
483,987 - IAI46_02290 0.72 -1.3
484,043 + IAI46_02290 0.79 -0.5
484,052 + IAI46_02290 0.80 +0.6
484,091 - IAI46_02290 0.85 +0.6
484,112 - IAI46_02290 0.88 +0.9
484,251 + +0.5
484,251 + -0.7
484,251 + +0.2
484,251 + +0.2
484,251 + -0.5
484,252 - +0.7
484,261 + -0.1
484,261 + +0.3
484,261 + -0.8
484,261 + +1.0
484,261 + -0.2
484,261 + +0.1
484,261 + -0.6
484,262 - +1.1
484,262 - +0.3
484,262 - -0.2
484,265 + +0.4
484,265 + -0.5
484,335 + +0.3
484,335 + +0.5
484,335 + -2.8
484,336 - -0.2
484,336 - -0.1
484,336 - +1.0
484,336 - -0.2
484,337 + +0.3
484,338 - +0.0
484,374 + IAI46_02295 0.12 +0.9
484,374 + IAI46_02295 0.12 +0.4
484,375 - IAI46_02295 0.12 +0.7
484,375 - IAI46_02295 0.12 -0.0
484,375 - IAI46_02295 0.12 -1.1
484,375 - IAI46_02295 0.12 -0.4
484,375 - IAI46_02295 0.12 -0.1
484,552 - IAI46_02295 0.26 -0.3
484,572 + IAI46_02295 0.28 -0.8
484,597 + IAI46_02295 0.30 +0.7
484,597 + IAI46_02295 0.30 +0.4
484,597 + IAI46_02295 0.30 -0.0
484,597 + IAI46_02295 0.30 +0.1
484,597 + IAI46_02295 0.30 +0.9
484,598 - IAI46_02295 0.30 -0.2
484,598 - IAI46_02295 0.30 -0.2
484,602 - IAI46_02295 0.30 -0.2
484,602 - IAI46_02295 0.30 -0.2
484,660 + IAI46_02295 0.35 -0.2
484,660 + IAI46_02295 0.35 -0.7
484,661 - IAI46_02295 0.35 -0.1
484,735 + IAI46_02295 0.41 +0.1
484,735 + IAI46_02295 0.41 +0.9
484,735 + IAI46_02295 0.41 +0.7
484,736 - IAI46_02295 0.41 +0.1
484,736 - IAI46_02295 0.41 -0.0
484,736 - IAI46_02295 0.41 +1.1
484,880 - IAI46_02295 0.53 -0.2
484,880 - IAI46_02295 0.53 +0.3
484,880 - IAI46_02295 0.53 +0.3
484,880 - IAI46_02295 0.53 -0.3
484,880 - IAI46_02295 0.53 +0.6
484,881 + IAI46_02295 0.53 +0.4
484,881 + IAI46_02295 0.53 -0.9
484,882 - IAI46_02295 0.53 +0.1
484,882 - IAI46_02295 0.53 -0.8
484,882 - IAI46_02295 0.53 -0.4
485,123 + IAI46_02295 0.72 -0.2

Or see this region's nucleotide sequence