Strain Fitness in Serratia liquefaciens MT49 around IAI46_01285

Experiment: Cadmium acetate 40 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_01280 and IAI46_01285 overlap by 33 nucleotidesIAI46_01285 and IAI46_01290 are separated by 322 nucleotides IAI46_01280: IAI46_01280 - HAMP domain-containing histidine kinase, at 283,157 to 284,449 _01280 IAI46_01285: IAI46_01285 - response regulator, at 284,417 to 285,232 _01285 IAI46_01290: IAI46_01290 - thioesterase family protein, at 285,555 to 285,971 _01290 Position (kb) 284 285 286Strain fitness (log2 ratio) -2 -1 0 1 2at 283.513 kb on + strand, within IAI46_01280at 283.552 kb on + strand, within IAI46_01280at 283.552 kb on + strand, within IAI46_01280at 283.552 kb on + strand, within IAI46_01280at 283.552 kb on + strand, within IAI46_01280at 283.553 kb on - strand, within IAI46_01280at 283.555 kb on - strand, within IAI46_01280at 283.690 kb on + strand, within IAI46_01280at 283.758 kb on + strand, within IAI46_01280at 283.758 kb on + strand, within IAI46_01280at 283.758 kb on + strand, within IAI46_01280at 283.762 kb on + strand, within IAI46_01280at 283.762 kb on + strand, within IAI46_01280at 283.762 kb on + strand, within IAI46_01280at 283.774 kb on + strand, within IAI46_01280at 283.803 kb on + strand, within IAI46_01280at 283.909 kb on + strand, within IAI46_01280at 283.943 kb on + strand, within IAI46_01280at 283.969 kb on - strand, within IAI46_01280at 283.969 kb on - strand, within IAI46_01280at 283.969 kb on - strand, within IAI46_01280at 284.087 kb on - strand, within IAI46_01280at 284.100 kb on - strand, within IAI46_01280at 284.106 kb on + strand, within IAI46_01280at 284.149 kb on + strand, within IAI46_01280at 284.202 kb on - strand, within IAI46_01280at 284.260 kb on + strand, within IAI46_01280at 284.323 kb on + strandat 284.325 kb on + strandat 284.326 kb on - strandat 284.333 kb on + strandat 284.455 kb on + strandat 284.490 kb on - strandat 284.497 kb on - strandat 284.502 kb on - strand, within IAI46_01285at 284.504 kb on + strand, within IAI46_01285at 284.505 kb on - strand, within IAI46_01285at 284.505 kb on - strand, within IAI46_01285at 284.537 kb on + strand, within IAI46_01285at 284.572 kb on + strand, within IAI46_01285at 284.598 kb on - strand, within IAI46_01285at 284.645 kb on - strand, within IAI46_01285at 284.645 kb on - strand, within IAI46_01285at 284.655 kb on + strand, within IAI46_01285at 284.655 kb on + strand, within IAI46_01285at 284.656 kb on - strand, within IAI46_01285at 284.659 kb on + strand, within IAI46_01285at 284.660 kb on - strand, within IAI46_01285at 284.660 kb on - strand, within IAI46_01285at 284.660 kb on - strand, within IAI46_01285at 284.660 kb on - strand, within IAI46_01285at 284.660 kb on - strand, within IAI46_01285at 284.660 kb on - strand, within IAI46_01285at 284.690 kb on - strand, within IAI46_01285at 284.804 kb on + strand, within IAI46_01285at 284.818 kb on + strand, within IAI46_01285at 284.818 kb on + strand, within IAI46_01285at 284.819 kb on - strand, within IAI46_01285at 284.820 kb on + strand, within IAI46_01285at 284.820 kb on + strand, within IAI46_01285at 284.820 kb on + strand, within IAI46_01285at 284.820 kb on + strand, within IAI46_01285at 284.820 kb on + strand, within IAI46_01285at 284.821 kb on - strand, within IAI46_01285at 284.857 kb on + strand, within IAI46_01285at 284.858 kb on - strand, within IAI46_01285at 284.858 kb on - strand, within IAI46_01285at 284.860 kb on + strand, within IAI46_01285at 284.889 kb on + strand, within IAI46_01285at 284.889 kb on + strand, within IAI46_01285at 284.889 kb on + strand, within IAI46_01285at 284.916 kb on - strand, within IAI46_01285at 284.950 kb on + strand, within IAI46_01285at 284.950 kb on + strand, within IAI46_01285at 284.951 kb on - strand, within IAI46_01285at 284.951 kb on - strand, within IAI46_01285at 284.954 kb on + strand, within IAI46_01285at 284.954 kb on + strand, within IAI46_01285at 284.955 kb on - strand, within IAI46_01285at 284.955 kb on - strand, within IAI46_01285at 284.955 kb on - strand, within IAI46_01285at 284.955 kb on - strand, within IAI46_01285at 284.955 kb on - strand, within IAI46_01285at 284.955 kb on - strand, within IAI46_01285at 285.016 kb on - strand, within IAI46_01285at 285.016 kb on - strand, within IAI46_01285at 285.016 kb on - strand, within IAI46_01285at 285.016 kb on - strand, within IAI46_01285at 285.024 kb on - strand, within IAI46_01285at 285.059 kb on - strand, within IAI46_01285at 285.059 kb on - strand, within IAI46_01285at 285.085 kb on + strand, within IAI46_01285at 285.086 kb on - strand, within IAI46_01285at 285.086 kb on - strand, within IAI46_01285at 285.087 kb on + strand, within IAI46_01285at 285.088 kb on - strand, within IAI46_01285at 285.088 kb on - strand, within IAI46_01285at 285.088 kb on - strand, within IAI46_01285at 285.264 kb on + strandat 285.265 kb on - strandat 285.266 kb on + strandat 285.266 kb on + strandat 285.266 kb on + strandat 285.267 kb on - strandat 285.267 kb on - strandat 285.372 kb on - strandat 285.372 kb on - strandat 285.380 kb on + strandat 285.381 kb on - strandat 285.386 kb on + strandat 285.387 kb on - strandat 285.387 kb on - strandat 285.387 kb on - strandat 285.387 kb on - strandat 285.390 kb on + strandat 285.390 kb on + strandat 285.391 kb on - strandat 285.391 kb on - strandat 285.391 kb on - strandat 285.397 kb on + strandat 285.397 kb on + strandat 285.397 kb on + strandat 285.397 kb on + strandat 285.397 kb on + strandat 285.397 kb on + strandat 285.397 kb on + strandat 285.397 kb on + strandat 285.398 kb on - strandat 285.398 kb on - strandat 285.398 kb on - strandat 285.398 kb on - strandat 285.398 kb on - strandat 285.399 kb on + strandat 285.399 kb on + strandat 285.399 kb on + strandat 285.400 kb on - strandat 285.400 kb on - strandat 285.400 kb on - strandat 285.400 kb on - strandat 285.444 kb on - strandat 285.444 kb on - strandat 285.470 kb on - strandat 285.514 kb on + strandat 285.577 kb on + strandat 285.597 kb on + strand, within IAI46_01290at 285.598 kb on - strand, within IAI46_01290at 285.616 kb on - strand, within IAI46_01290at 285.616 kb on - strand, within IAI46_01290at 285.616 kb on - strand, within IAI46_01290at 285.616 kb on - strand, within IAI46_01290at 285.633 kb on + strand, within IAI46_01290at 285.634 kb on - strand, within IAI46_01290at 285.686 kb on + strand, within IAI46_01290at 285.686 kb on + strand, within IAI46_01290at 285.686 kb on + strand, within IAI46_01290at 285.698 kb on - strand, within IAI46_01290at 285.722 kb on + strand, within IAI46_01290at 285.722 kb on + strand, within IAI46_01290at 285.722 kb on + strand, within IAI46_01290at 285.731 kb on + strand, within IAI46_01290at 285.731 kb on + strand, within IAI46_01290at 285.731 kb on + strand, within IAI46_01290at 285.732 kb on - strand, within IAI46_01290at 285.780 kb on - strand, within IAI46_01290at 285.832 kb on - strand, within IAI46_01290at 285.851 kb on + strand, within IAI46_01290at 285.851 kb on + strand, within IAI46_01290at 285.851 kb on + strand, within IAI46_01290at 285.851 kb on + strand, within IAI46_01290at 285.851 kb on + strand, within IAI46_01290at 285.852 kb on - strand, within IAI46_01290at 285.852 kb on - strand, within IAI46_01290at 285.894 kb on - strand, within IAI46_01290at 285.894 kb on - strand, within IAI46_01290at 285.924 kb on + strand, within IAI46_01290at 285.925 kb on - strand, within IAI46_01290at 285.996 kb on - strandat 286.018 kb on + strandat 286.018 kb on + strandat 286.019 kb on - strandat 286.032 kb on + strandat 286.032 kb on + strandat 286.032 kb on + strandat 286.033 kb on - strandat 286.033 kb on - strandat 286.035 kb on + strandat 286.036 kb on - strandat 286.057 kb on + strandat 286.197 kb on + strandat 286.198 kb on - strandat 286.198 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium acetate 40 uM, aerobic
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283,513 + IAI46_01280 0.28 +0.0
283,552 + IAI46_01280 0.31 -0.0
283,552 + IAI46_01280 0.31 +0.4
283,552 + IAI46_01280 0.31 -0.5
283,552 + IAI46_01280 0.31 +0.8
283,553 - IAI46_01280 0.31 -0.5
283,555 - IAI46_01280 0.31 -0.0
283,690 + IAI46_01280 0.41 +1.2
283,758 + IAI46_01280 0.46 +0.5
283,758 + IAI46_01280 0.46 +0.2
283,758 + IAI46_01280 0.46 -1.5
283,762 + IAI46_01280 0.47 +0.6
283,762 + IAI46_01280 0.47 +0.2
283,762 + IAI46_01280 0.47 +1.0
283,774 + IAI46_01280 0.48 +0.2
283,803 + IAI46_01280 0.50 -1.0
283,909 + IAI46_01280 0.58 -1.0
283,943 + IAI46_01280 0.61 +0.1
283,969 - IAI46_01280 0.63 +0.3
283,969 - IAI46_01280 0.63 -0.2
283,969 - IAI46_01280 0.63 +0.7
284,087 - IAI46_01280 0.72 +0.7
284,100 - IAI46_01280 0.73 -0.6
284,106 + IAI46_01280 0.73 +0.3
284,149 + IAI46_01280 0.77 +0.6
284,202 - IAI46_01280 0.81 -0.5
284,260 + IAI46_01280 0.85 -1.4
284,323 + -0.1
284,325 + +1.1
284,326 - -0.9
284,333 + -0.2
284,455 + +0.2
284,490 - -0.2
284,497 - +0.5
284,502 - IAI46_01285 0.10 -0.1
284,504 + IAI46_01285 0.11 -0.2
284,505 - IAI46_01285 0.11 +0.2
284,505 - IAI46_01285 0.11 +0.5
284,537 + IAI46_01285 0.15 -0.6
284,572 + IAI46_01285 0.19 +0.1
284,598 - IAI46_01285 0.22 -0.4
284,645 - IAI46_01285 0.28 +1.2
284,645 - IAI46_01285 0.28 -0.7
284,655 + IAI46_01285 0.29 +0.9
284,655 + IAI46_01285 0.29 +0.3
284,656 - IAI46_01285 0.29 -0.3
284,659 + IAI46_01285 0.30 +0.3
284,660 - IAI46_01285 0.30 +0.3
284,660 - IAI46_01285 0.30 +0.2
284,660 - IAI46_01285 0.30 -0.6
284,660 - IAI46_01285 0.30 +0.3
284,660 - IAI46_01285 0.30 +0.4
284,660 - IAI46_01285 0.30 +0.8
284,690 - IAI46_01285 0.33 -0.5
284,804 + IAI46_01285 0.47 +0.3
284,818 + IAI46_01285 0.49 +1.4
284,818 + IAI46_01285 0.49 +0.4
284,819 - IAI46_01285 0.49 +0.0
284,820 + IAI46_01285 0.49 -0.3
284,820 + IAI46_01285 0.49 +1.1
284,820 + IAI46_01285 0.49 +0.5
284,820 + IAI46_01285 0.49 -1.0
284,820 + IAI46_01285 0.49 -0.1
284,821 - IAI46_01285 0.50 -0.2
284,857 + IAI46_01285 0.54 -0.1
284,858 - IAI46_01285 0.54 -0.2
284,858 - IAI46_01285 0.54 -0.7
284,860 + IAI46_01285 0.54 -0.2
284,889 + IAI46_01285 0.58 -0.7
284,889 + IAI46_01285 0.58 +0.2
284,889 + IAI46_01285 0.58 +0.6
284,916 - IAI46_01285 0.61 +0.1
284,950 + IAI46_01285 0.65 +1.1
284,950 + IAI46_01285 0.65 +0.3
284,951 - IAI46_01285 0.65 +0.5
284,951 - IAI46_01285 0.65 +0.3
284,954 + IAI46_01285 0.66 +1.9
284,954 + IAI46_01285 0.66 -0.2
284,955 - IAI46_01285 0.66 +0.5
284,955 - IAI46_01285 0.66 +1.3
284,955 - IAI46_01285 0.66 -0.4
284,955 - IAI46_01285 0.66 +0.4
284,955 - IAI46_01285 0.66 -0.4
284,955 - IAI46_01285 0.66 +0.1
285,016 - IAI46_01285 0.73 +1.0
285,016 - IAI46_01285 0.73 +0.2
285,016 - IAI46_01285 0.73 -0.7
285,016 - IAI46_01285 0.73 +0.4
285,024 - IAI46_01285 0.74 +0.1
285,059 - IAI46_01285 0.79 -0.2
285,059 - IAI46_01285 0.79 -0.2
285,085 + IAI46_01285 0.82 +0.3
285,086 - IAI46_01285 0.82 +0.8
285,086 - IAI46_01285 0.82 -0.0
285,087 + IAI46_01285 0.82 -0.5
285,088 - IAI46_01285 0.82 +0.7
285,088 - IAI46_01285 0.82 +0.0
285,088 - IAI46_01285 0.82 -1.1
285,264 + +0.8
285,265 - +0.6
285,266 + -0.6
285,266 + -0.3
285,266 + +0.5
285,267 - -0.2
285,267 - +0.1
285,372 - -0.2
285,372 - +0.3
285,380 + +2.4
285,381 - +0.5
285,386 + +0.3
285,387 - -0.6
285,387 - +0.2
285,387 - +0.0
285,387 - +0.0
285,390 + +0.1
285,390 + -0.2
285,391 - +0.6
285,391 - -1.0
285,391 - +0.5
285,397 + +0.0
285,397 + +0.5
285,397 + -1.3
285,397 + +0.2
285,397 + -0.3
285,397 + -0.4
285,397 + -0.1
285,397 + -0.1
285,398 - +1.2
285,398 - +0.0
285,398 - +0.1
285,398 - +0.2
285,398 - +0.0
285,399 + +0.8
285,399 + +0.7
285,399 + +0.4
285,400 - -0.2
285,400 - +0.3
285,400 - -0.1
285,400 - +0.5
285,444 - +0.2
285,444 - -0.1
285,470 - +0.6
285,514 + +0.1
285,577 + +0.1
285,597 + IAI46_01290 0.10 -0.4
285,598 - IAI46_01290 0.10 -1.3
285,616 - IAI46_01290 0.15 +1.0
285,616 - IAI46_01290 0.15 -0.7
285,616 - IAI46_01290 0.15 -0.8
285,616 - IAI46_01290 0.15 -0.1
285,633 + IAI46_01290 0.19 +0.8
285,634 - IAI46_01290 0.19 +0.2
285,686 + IAI46_01290 0.31 +0.1
285,686 + IAI46_01290 0.31 -0.5
285,686 + IAI46_01290 0.31 -0.7
285,698 - IAI46_01290 0.34 -1.2
285,722 + IAI46_01290 0.40 -1.1
285,722 + IAI46_01290 0.40 -0.5
285,722 + IAI46_01290 0.40 -0.8
285,731 + IAI46_01290 0.42 +0.5
285,731 + IAI46_01290 0.42 +0.4
285,731 + IAI46_01290 0.42 -0.1
285,732 - IAI46_01290 0.42 -1.1
285,780 - IAI46_01290 0.54 -2.7
285,832 - IAI46_01290 0.66 -0.3
285,851 + IAI46_01290 0.71 +0.1
285,851 + IAI46_01290 0.71 +0.8
285,851 + IAI46_01290 0.71 +0.7
285,851 + IAI46_01290 0.71 -0.2
285,851 + IAI46_01290 0.71 -0.3
285,852 - IAI46_01290 0.71 +0.4
285,852 - IAI46_01290 0.71 +0.6
285,894 - IAI46_01290 0.81 +0.3
285,894 - IAI46_01290 0.81 +0.2
285,924 + IAI46_01290 0.88 -0.3
285,925 - IAI46_01290 0.89 +0.5
285,996 - +0.5
286,018 + -0.5
286,018 + +0.8
286,019 - +0.1
286,032 + +0.7
286,032 + +0.3
286,032 + +0.0
286,033 - -0.1
286,033 - +0.4
286,035 + +0.3
286,036 - +0.6
286,057 + +0.3
286,197 + +0.2
286,198 - +0.1
286,198 - -0.3

Or see this region's nucleotide sequence