Strain Fitness in Serratia liquefaciens MT49 around IAI46_01120

Experiment: Cadmium acetate 40 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_01115 and IAI46_01120 are separated by 174 nucleotidesIAI46_01120 and IAI46_01125 are separated by 168 nucleotides IAI46_01115: IAI46_01115 - 4-hydroxy-3-polyprenylbenzoate decarboxylase, at 246,150 to 247,670 _01115 IAI46_01120: IAI46_01120 - NAD(P)H-flavin reductase, at 247,845 to 248,546 _01120 IAI46_01125: IAI46_01125 - acetyl-CoA C-acyltransferase FadA, at 248,715 to 249,878 _01125 Position (kb) 247 248 249Strain fitness (log2 ratio) -2 -1 0 1 2at 247.666 kb on + strandat 247.666 kb on + strandat 247.666 kb on + strandat 247.666 kb on + strandat 247.666 kb on + strandat 247.666 kb on + strandat 247.666 kb on + strandat 247.667 kb on - strandat 247.668 kb on + strandat 247.668 kb on + strandat 247.668 kb on + strandat 247.668 kb on + strandat 247.668 kb on + strandat 247.668 kb on + strandat 247.668 kb on + strandat 247.668 kb on + strandat 247.669 kb on - strandat 247.669 kb on - strandat 247.673 kb on + strandat 247.683 kb on - strandat 247.728 kb on + strandat 247.728 kb on + strandat 247.728 kb on + strandat 247.728 kb on + strandat 247.736 kb on + strandat 247.784 kb on + strandat 247.784 kb on + strandat 247.784 kb on + strandat 247.793 kb on + strandat 247.793 kb on + strandat 247.793 kb on + strandat 247.794 kb on - strandat 247.852 kb on + strandat 247.852 kb on + strandat 247.876 kb on + strandat 247.950 kb on + strand, within IAI46_01120at 247.951 kb on - strand, within IAI46_01120at 248.022 kb on + strand, within IAI46_01120at 248.023 kb on - strand, within IAI46_01120at 248.024 kb on + strand, within IAI46_01120at 248.024 kb on + strand, within IAI46_01120at 248.194 kb on - strand, within IAI46_01120at 248.194 kb on - strand, within IAI46_01120at 248.243 kb on + strand, within IAI46_01120at 248.249 kb on + strand, within IAI46_01120at 248.250 kb on - strand, within IAI46_01120at 248.250 kb on - strand, within IAI46_01120at 248.250 kb on - strand, within IAI46_01120at 248.253 kb on + strand, within IAI46_01120at 248.254 kb on - strand, within IAI46_01120at 248.401 kb on + strand, within IAI46_01120at 248.414 kb on - strand, within IAI46_01120at 248.439 kb on + strand, within IAI46_01120at 248.440 kb on - strand, within IAI46_01120at 248.441 kb on + strand, within IAI46_01120at 248.442 kb on - strand, within IAI46_01120at 248.544 kb on + strandat 248.545 kb on - strandat 248.545 kb on - strandat 248.545 kb on - strandat 248.618 kb on + strandat 248.619 kb on - strandat 248.648 kb on + strandat 248.648 kb on + strandat 248.658 kb on - strandat 248.658 kb on - strandat 248.706 kb on + strandat 248.707 kb on - strandat 248.707 kb on - strandat 248.716 kb on + strandat 248.716 kb on + strandat 248.716 kb on + strandat 248.717 kb on - strandat 248.759 kb on + strandat 248.759 kb on + strandat 248.759 kb on + strandat 248.760 kb on - strandat 248.760 kb on - strandat 248.819 kb on + strandat 248.819 kb on + strandat 248.820 kb on - strandat 248.908 kb on - strand, within IAI46_01125at 248.908 kb on - strand, within IAI46_01125at 249.268 kb on + strand, within IAI46_01125at 249.268 kb on + strand, within IAI46_01125at 249.269 kb on - strand, within IAI46_01125at 249.329 kb on - strand, within IAI46_01125at 249.401 kb on + strand, within IAI46_01125at 249.401 kb on + strand, within IAI46_01125at 249.401 kb on + strand, within IAI46_01125at 249.402 kb on - strand, within IAI46_01125at 249.402 kb on - strand, within IAI46_01125at 249.408 kb on + strand, within IAI46_01125at 249.408 kb on + strand, within IAI46_01125at 249.408 kb on + strand, within IAI46_01125at 249.409 kb on - strand, within IAI46_01125at 249.409 kb on - strand, within IAI46_01125at 249.518 kb on + strand, within IAI46_01125at 249.518 kb on + strand, within IAI46_01125at 249.518 kb on + strand, within IAI46_01125at 249.518 kb on + strand, within IAI46_01125at 249.519 kb on - strand, within IAI46_01125at 249.519 kb on - strand, within IAI46_01125

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Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium acetate 40 uM, aerobic
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247,666 + -0.1
247,666 + +0.9
247,666 + +0.5
247,666 + +0.3
247,666 + -0.1
247,666 + +0.2
247,666 + +0.0
247,667 - +0.6
247,668 + +0.2
247,668 + +0.4
247,668 + +0.5
247,668 + +1.6
247,668 + -0.1
247,668 + +0.8
247,668 + +0.5
247,668 + +0.7
247,669 - +1.6
247,669 - +1.3
247,673 + -0.3
247,683 - +1.6
247,728 + +0.0
247,728 + +0.2
247,728 + +0.2
247,728 + +1.0
247,736 + -0.1
247,784 + -0.8
247,784 + +0.8
247,784 + +1.4
247,793 + +0.1
247,793 + +1.0
247,793 + +0.9
247,794 - +2.3
247,852 + +2.1
247,852 + +1.3
247,876 + +0.9
247,950 + IAI46_01120 0.15 +0.2
247,951 - IAI46_01120 0.15 -0.0
248,022 + IAI46_01120 0.25 +1.6
248,023 - IAI46_01120 0.25 -0.8
248,024 + IAI46_01120 0.25 +0.4
248,024 + IAI46_01120 0.25 +1.6
248,194 - IAI46_01120 0.50 +1.1
248,194 - IAI46_01120 0.50 -1.9
248,243 + IAI46_01120 0.57 -0.1
248,249 + IAI46_01120 0.58 -1.5
248,250 - IAI46_01120 0.58 +0.1
248,250 - IAI46_01120 0.58 +0.4
248,250 - IAI46_01120 0.58 +1.1
248,253 + IAI46_01120 0.58 +0.6
248,254 - IAI46_01120 0.58 +0.9
248,401 + IAI46_01120 0.79 +1.1
248,414 - IAI46_01120 0.81 +1.1
248,439 + IAI46_01120 0.85 -0.1
248,440 - IAI46_01120 0.85 +1.4
248,441 + IAI46_01120 0.85 +1.7
248,442 - IAI46_01120 0.85 -1.2
248,544 + -1.0
248,545 - +0.7
248,545 - -0.1
248,545 - +0.4
248,618 + +0.2
248,619 - +0.3
248,648 + +0.5
248,648 + -0.4
248,658 - +0.4
248,658 - +0.0
248,706 + +0.7
248,707 - +0.3
248,707 - +0.2
248,716 + +0.1
248,716 + -0.6
248,716 + +0.3
248,717 - +0.3
248,759 + +0.4
248,759 + +0.3
248,759 + +0.6
248,760 - -0.3
248,760 - -0.9
248,819 + +0.3
248,819 + +0.4
248,820 - +1.0
248,908 - IAI46_01125 0.17 -0.5
248,908 - IAI46_01125 0.17 +0.8
249,268 + IAI46_01125 0.48 -0.6
249,268 + IAI46_01125 0.48 +0.9
249,269 - IAI46_01125 0.48 -0.2
249,329 - IAI46_01125 0.53 +0.1
249,401 + IAI46_01125 0.59 +0.1
249,401 + IAI46_01125 0.59 +0.1
249,401 + IAI46_01125 0.59 +0.1
249,402 - IAI46_01125 0.59 +0.1
249,402 - IAI46_01125 0.59 +0.6
249,408 + IAI46_01125 0.60 +0.2
249,408 + IAI46_01125 0.60 -0.1
249,408 + IAI46_01125 0.60 -0.1
249,409 - IAI46_01125 0.60 +0.2
249,409 - IAI46_01125 0.60 +0.1
249,518 + IAI46_01125 0.69 +0.3
249,518 + IAI46_01125 0.69 +0.1
249,518 + IAI46_01125 0.69 +0.0
249,518 + IAI46_01125 0.69 +0.1
249,519 - IAI46_01125 0.69 +0.6
249,519 - IAI46_01125 0.69 +0.8

Or see this region's nucleotide sequence