Strain Fitness in Serratia liquefaciens MT49 around IAI46_01025

Experiment: Cadmium acetate 40 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_01015 and IAI46_01020 overlap by 20 nucleotidesIAI46_01020 and IAI46_01025 are separated by 150 nucleotidesIAI46_01025 and IAI46_01030 are separated by 32 nucleotides IAI46_01015: IAI46_01015 - AEC family transporter, at 226,829 to 227,785 _01015 IAI46_01020: IAI46_01020 - hypothetical protein, at 227,766 to 228,095 _01020 IAI46_01025: IAI46_01025 - DMT family transporter, at 228,246 to 229,109 _01025 IAI46_01030: IAI46_01030 - HTH-type transcriptional regulator MetR, at 229,142 to 230,092 _01030 Position (kb) 228 229 230Strain fitness (log2 ratio) -1 0 1at 227.248 kb on + strand, within IAI46_01015at 227.279 kb on - strand, within IAI46_01015at 227.279 kb on - strand, within IAI46_01015at 227.341 kb on + strand, within IAI46_01015at 227.501 kb on + strand, within IAI46_01015at 227.663 kb on + strand, within IAI46_01015at 227.688 kb on + strand, within IAI46_01015at 227.688 kb on + strand, within IAI46_01015at 227.689 kb on - strand, within IAI46_01015at 227.689 kb on - strand, within IAI46_01015at 227.746 kb on + strandat 227.746 kb on + strandat 227.746 kb on + strandat 227.747 kb on - strandat 227.903 kb on + strand, within IAI46_01020at 227.903 kb on + strand, within IAI46_01020at 227.904 kb on - strand, within IAI46_01020at 227.904 kb on - strand, within IAI46_01020at 227.904 kb on - strand, within IAI46_01020at 227.907 kb on - strand, within IAI46_01020at 227.955 kb on - strand, within IAI46_01020at 227.963 kb on + strand, within IAI46_01020at 227.963 kb on + strand, within IAI46_01020at 227.963 kb on + strand, within IAI46_01020at 227.963 kb on + strand, within IAI46_01020at 227.963 kb on + strand, within IAI46_01020at 227.963 kb on + strand, within IAI46_01020at 227.963 kb on + strand, within IAI46_01020at 227.963 kb on + strand, within IAI46_01020at 227.964 kb on - strand, within IAI46_01020at 228.073 kb on + strandat 228.074 kb on - strandat 228.085 kb on + strandat 228.085 kb on + strandat 228.086 kb on - strandat 228.114 kb on + strandat 228.115 kb on - strandat 228.118 kb on - strandat 228.170 kb on + strandat 228.171 kb on - strandat 228.208 kb on + strandat 228.231 kb on + strandat 228.263 kb on + strandat 228.263 kb on + strandat 228.263 kb on + strandat 228.263 kb on + strandat 228.263 kb on + strandat 228.263 kb on + strandat 228.264 kb on - strandat 228.266 kb on + strandat 228.266 kb on + strandat 228.266 kb on + strandat 228.267 kb on - strandat 228.267 kb on - strandat 228.267 kb on - strandat 228.306 kb on + strandat 228.306 kb on + strandat 228.307 kb on - strandat 228.423 kb on + strand, within IAI46_01025at 228.423 kb on + strand, within IAI46_01025at 228.424 kb on - strand, within IAI46_01025at 228.424 kb on - strand, within IAI46_01025at 228.424 kb on - strand, within IAI46_01025at 228.424 kb on - strand, within IAI46_01025at 228.424 kb on - strand, within IAI46_01025at 228.424 kb on - strand, within IAI46_01025at 228.448 kb on + strand, within IAI46_01025at 228.448 kb on + strand, within IAI46_01025at 228.448 kb on + strand, within IAI46_01025at 228.448 kb on + strand, within IAI46_01025at 228.449 kb on - strand, within IAI46_01025at 228.449 kb on - strand, within IAI46_01025at 228.449 kb on - strand, within IAI46_01025at 228.459 kb on + strand, within IAI46_01025at 228.459 kb on + strand, within IAI46_01025at 228.460 kb on - strand, within IAI46_01025at 228.460 kb on - strand, within IAI46_01025at 228.460 kb on - strand, within IAI46_01025at 228.460 kb on - strand, within IAI46_01025at 228.460 kb on - strand, within IAI46_01025at 228.480 kb on + strand, within IAI46_01025at 228.480 kb on + strand, within IAI46_01025at 228.481 kb on - strand, within IAI46_01025at 228.481 kb on - strand, within IAI46_01025at 228.481 kb on - strand, within IAI46_01025at 228.481 kb on - strand, within IAI46_01025at 228.481 kb on - strand, within IAI46_01025at 228.481 kb on - strand, within IAI46_01025at 228.486 kb on + strand, within IAI46_01025at 228.486 kb on + strand, within IAI46_01025at 228.486 kb on + strand, within IAI46_01025at 228.487 kb on - strand, within IAI46_01025at 228.487 kb on - strand, within IAI46_01025at 228.487 kb on - strand, within IAI46_01025at 228.487 kb on - strand, within IAI46_01025at 228.516 kb on - strand, within IAI46_01025at 228.534 kb on + strand, within IAI46_01025at 228.535 kb on - strand, within IAI46_01025at 228.535 kb on - strand, within IAI46_01025at 228.550 kb on - strand, within IAI46_01025at 228.585 kb on + strand, within IAI46_01025at 228.585 kb on + strand, within IAI46_01025at 228.586 kb on - strand, within IAI46_01025at 228.586 kb on - strand, within IAI46_01025at 228.589 kb on + strand, within IAI46_01025at 228.589 kb on + strand, within IAI46_01025at 228.589 kb on + strand, within IAI46_01025at 228.589 kb on + strand, within IAI46_01025at 228.589 kb on + strand, within IAI46_01025at 228.589 kb on + strand, within IAI46_01025at 228.589 kb on + strand, within IAI46_01025at 228.589 kb on + strand, within IAI46_01025at 228.590 kb on - strand, within IAI46_01025at 228.590 kb on - strand, within IAI46_01025at 228.590 kb on - strand, within IAI46_01025at 228.602 kb on - strand, within IAI46_01025at 228.634 kb on - strand, within IAI46_01025at 228.774 kb on + strand, within IAI46_01025at 228.774 kb on + strand, within IAI46_01025at 228.775 kb on - strand, within IAI46_01025at 228.775 kb on - strand, within IAI46_01025at 228.846 kb on - strand, within IAI46_01025at 228.880 kb on + strand, within IAI46_01025at 228.881 kb on - strand, within IAI46_01025at 228.901 kb on - strand, within IAI46_01025at 228.957 kb on + strand, within IAI46_01025at 228.959 kb on + strand, within IAI46_01025at 228.959 kb on + strand, within IAI46_01025at 228.960 kb on - strand, within IAI46_01025at 228.960 kb on - strand, within IAI46_01025at 229.096 kb on + strandat 229.140 kb on - strandat 229.436 kb on - strand, within IAI46_01030at 229.604 kb on + strand, within IAI46_01030at 229.630 kb on - strand, within IAI46_01030at 229.877 kb on + strand, within IAI46_01030at 229.878 kb on - strand, within IAI46_01030at 229.878 kb on - strand, within IAI46_01030at 229.878 kb on - strand, within IAI46_01030at 229.878 kb on - strand, within IAI46_01030at 229.878 kb on - strand, within IAI46_01030at 229.878 kb on - strand, within IAI46_01030at 229.919 kb on - strand, within IAI46_01030at 230.072 kb on + strandat 230.072 kb on + strandat 230.073 kb on - strandat 230.073 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium acetate 40 uM, aerobic
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227,248 + IAI46_01015 0.44 -0.9
227,279 - IAI46_01015 0.47 -1.3
227,279 - IAI46_01015 0.47 +0.9
227,341 + IAI46_01015 0.54 +0.8
227,501 + IAI46_01015 0.70 -0.0
227,663 + IAI46_01015 0.87 -0.1
227,688 + IAI46_01015 0.90 +0.4
227,688 + IAI46_01015 0.90 -0.0
227,689 - IAI46_01015 0.90 +0.1
227,689 - IAI46_01015 0.90 +0.5
227,746 + -0.3
227,746 + +0.6
227,746 + +0.1
227,747 - +0.1
227,903 + IAI46_01020 0.42 +0.1
227,903 + IAI46_01020 0.42 -0.1
227,904 - IAI46_01020 0.42 +0.2
227,904 - IAI46_01020 0.42 -0.1
227,904 - IAI46_01020 0.42 +0.4
227,907 - IAI46_01020 0.43 +0.2
227,955 - IAI46_01020 0.57 +0.3
227,963 + IAI46_01020 0.60 -0.1
227,963 + IAI46_01020 0.60 +0.6
227,963 + IAI46_01020 0.60 +0.1
227,963 + IAI46_01020 0.60 -0.4
227,963 + IAI46_01020 0.60 +0.4
227,963 + IAI46_01020 0.60 +0.7
227,963 + IAI46_01020 0.60 +0.5
227,963 + IAI46_01020 0.60 +1.1
227,964 - IAI46_01020 0.60 +0.6
228,073 + -0.1
228,074 - +0.6
228,085 + +0.4
228,085 + +1.0
228,086 - +0.0
228,114 + -1.0
228,115 - +0.2
228,118 - -0.3
228,170 + -0.4
228,171 - +0.4
228,208 + -0.5
228,231 + -0.0
228,263 + -0.0
228,263 + +0.3
228,263 + +0.1
228,263 + -0.0
228,263 + +0.6
228,263 + -0.4
228,264 - +0.8
228,266 + -0.5
228,266 + +0.4
228,266 + +0.4
228,267 - -1.0
228,267 - +0.7
228,267 - -1.0
228,306 + -0.7
228,306 + +0.5
228,307 - -0.7
228,423 + IAI46_01025 0.20 +0.6
228,423 + IAI46_01025 0.20 +1.1
228,424 - IAI46_01025 0.21 -0.0
228,424 - IAI46_01025 0.21 +0.7
228,424 - IAI46_01025 0.21 -0.4
228,424 - IAI46_01025 0.21 -0.6
228,424 - IAI46_01025 0.21 +0.1
228,424 - IAI46_01025 0.21 -0.4
228,448 + IAI46_01025 0.23 -0.6
228,448 + IAI46_01025 0.23 -0.2
228,448 + IAI46_01025 0.23 +1.1
228,448 + IAI46_01025 0.23 +0.5
228,449 - IAI46_01025 0.23 -0.2
228,449 - IAI46_01025 0.23 +0.1
228,449 - IAI46_01025 0.23 -0.5
228,459 + IAI46_01025 0.25 +0.2
228,459 + IAI46_01025 0.25 -0.1
228,460 - IAI46_01025 0.25 -0.1
228,460 - IAI46_01025 0.25 +0.2
228,460 - IAI46_01025 0.25 +0.6
228,460 - IAI46_01025 0.25 +0.5
228,460 - IAI46_01025 0.25 -0.3
228,480 + IAI46_01025 0.27 +0.4
228,480 + IAI46_01025 0.27 +0.6
228,481 - IAI46_01025 0.27 -0.2
228,481 - IAI46_01025 0.27 -0.0
228,481 - IAI46_01025 0.27 -0.7
228,481 - IAI46_01025 0.27 +1.0
228,481 - IAI46_01025 0.27 -0.4
228,481 - IAI46_01025 0.27 -0.9
228,486 + IAI46_01025 0.28 +1.2
228,486 + IAI46_01025 0.28 +0.0
228,486 + IAI46_01025 0.28 +0.2
228,487 - IAI46_01025 0.28 +0.3
228,487 - IAI46_01025 0.28 +0.4
228,487 - IAI46_01025 0.28 +0.5
228,487 - IAI46_01025 0.28 -0.8
228,516 - IAI46_01025 0.31 +0.3
228,534 + IAI46_01025 0.33 -0.2
228,535 - IAI46_01025 0.33 +0.9
228,535 - IAI46_01025 0.33 -0.5
228,550 - IAI46_01025 0.35 +0.6
228,585 + IAI46_01025 0.39 +0.5
228,585 + IAI46_01025 0.39 +0.9
228,586 - IAI46_01025 0.39 +0.9
228,586 - IAI46_01025 0.39 +0.9
228,589 + IAI46_01025 0.40 +0.3
228,589 + IAI46_01025 0.40 +0.6
228,589 + IAI46_01025 0.40 +0.2
228,589 + IAI46_01025 0.40 +0.0
228,589 + IAI46_01025 0.40 +0.0
228,589 + IAI46_01025 0.40 +0.3
228,589 + IAI46_01025 0.40 +0.7
228,589 + IAI46_01025 0.40 +1.2
228,590 - IAI46_01025 0.40 -0.0
228,590 - IAI46_01025 0.40 +1.5
228,590 - IAI46_01025 0.40 +0.3
228,602 - IAI46_01025 0.41 +0.1
228,634 - IAI46_01025 0.45 -0.2
228,774 + IAI46_01025 0.61 +0.2
228,774 + IAI46_01025 0.61 -0.4
228,775 - IAI46_01025 0.61 -0.2
228,775 - IAI46_01025 0.61 +0.9
228,846 - IAI46_01025 0.69 +0.3
228,880 + IAI46_01025 0.73 +0.1
228,881 - IAI46_01025 0.73 -0.0
228,901 - IAI46_01025 0.76 +0.4
228,957 + IAI46_01025 0.82 -0.2
228,959 + IAI46_01025 0.83 -0.5
228,959 + IAI46_01025 0.83 -0.1
228,960 - IAI46_01025 0.83 +1.4
228,960 - IAI46_01025 0.83 -0.0
229,096 + +0.5
229,140 - -0.4
229,436 - IAI46_01030 0.31 -0.2
229,604 + IAI46_01030 0.49 -0.4
229,630 - IAI46_01030 0.51 +0.1
229,877 + IAI46_01030 0.77 -0.1
229,878 - IAI46_01030 0.77 +0.4
229,878 - IAI46_01030 0.77 +0.6
229,878 - IAI46_01030 0.77 +0.2
229,878 - IAI46_01030 0.77 +0.8
229,878 - IAI46_01030 0.77 -0.3
229,878 - IAI46_01030 0.77 -0.8
229,919 - IAI46_01030 0.82 -0.4
230,072 + -1.6
230,072 + -0.4
230,073 - -0.1
230,073 - -0.3

Or see this region's nucleotide sequence