Experiment: Cadmium acetate 40 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_00440 and IAI46_00445 are separated by 100 nucleotides IAI46_00445 and IAI46_00450 are separated by 120 nucleotides IAI46_00450 and IAI46_00460 are separated by 215 nucleotides IAI46_00460 and IAI46_00465 overlap by 13 nucleotides
IAI46_00440: IAI46_00440 - signal transduction histidine-protein kinase/phosphatase UhpB, at 99,614 to 101,149
_00440
IAI46_00445: IAI46_00445 - MFS transporter, at 101,250 to 102,581
_00445
IAI46_00450: IAI46_00450 - tRNA-Pro, at 102,702 to 102,778
_00450
IAI46_00460: IAI46_00460 - transcriptional regulator, at 102,994 to 103,350
_00460
IAI46_00465: IAI46_00465 - hypothetical protein, at 103,338 to 103,634
_00465
Position (kb) 101
102
103 Strain fitness (log2 ratio) -2
-1
0
1
2 at 100.344 kb on + strand, within IAI46_00440 at 100.345 kb on - strand, within IAI46_00440 at 100.473 kb on + strand, within IAI46_00440 at 100.612 kb on + strand, within IAI46_00440 at 100.612 kb on + strand, within IAI46_00440 at 100.613 kb on - strand, within IAI46_00440 at 100.666 kb on + strand, within IAI46_00440 at 100.666 kb on + strand, within IAI46_00440 at 100.666 kb on + strand, within IAI46_00440 at 100.666 kb on + strand, within IAI46_00440 at 100.666 kb on + strand, within IAI46_00440 at 100.666 kb on + strand, within IAI46_00440 at 100.666 kb on + strand, within IAI46_00440 at 100.667 kb on - strand, within IAI46_00440 at 100.686 kb on - strand, within IAI46_00440 at 100.686 kb on - strand, within IAI46_00440 at 100.686 kb on - strand, within IAI46_00440 at 100.735 kb on + strand, within IAI46_00440 at 100.736 kb on - strand, within IAI46_00440 at 100.793 kb on - strand, within IAI46_00440 at 100.866 kb on - strand, within IAI46_00440 at 100.952 kb on - strand, within IAI46_00440 at 101.059 kb on + strand at 101.148 kb on - strand at 101.153 kb on + strand at 101.160 kb on + strand at 101.161 kb on - strand at 101.161 kb on - strand at 101.166 kb on + strand at 101.167 kb on - strand at 101.189 kb on - strand at 101.218 kb on - strand at 101.218 kb on - strand at 101.232 kb on + strand at 101.319 kb on + strand at 101.319 kb on + strand at 101.319 kb on + strand at 101.320 kb on - strand at 101.320 kb on - strand at 101.320 kb on - strand at 101.321 kb on + strand at 101.321 kb on + strand at 101.321 kb on + strand at 101.321 kb on + strand at 101.322 kb on - strand at 101.322 kb on - strand at 101.322 kb on - strand at 101.322 kb on - strand at 101.325 kb on + strand at 101.325 kb on + strand at 101.325 kb on + strand at 101.326 kb on - strand at 101.355 kb on + strand at 101.355 kb on + strand at 101.355 kb on + strand at 101.356 kb on - strand at 101.356 kb on - strand at 101.356 kb on - strand at 101.356 kb on - strand at 101.356 kb on - strand at 101.364 kb on + strand at 101.377 kb on - strand at 101.381 kb on + strand at 101.462 kb on + strand, within IAI46_00445 at 101.472 kb on + strand, within IAI46_00445 at 101.472 kb on + strand, within IAI46_00445 at 101.472 kb on + strand, within IAI46_00445 at 101.481 kb on + strand, within IAI46_00445 at 101.481 kb on + strand, within IAI46_00445 at 101.540 kb on + strand, within IAI46_00445 at 101.540 kb on + strand, within IAI46_00445 at 101.576 kb on + strand, within IAI46_00445 at 101.576 kb on + strand, within IAI46_00445 at 101.576 kb on + strand, within IAI46_00445 at 101.591 kb on + strand, within IAI46_00445 at 101.592 kb on - strand, within IAI46_00445 at 101.592 kb on - strand, within IAI46_00445 at 101.777 kb on + strand, within IAI46_00445 at 101.778 kb on - strand, within IAI46_00445 at 101.894 kb on + strand, within IAI46_00445 at 101.982 kb on + strand, within IAI46_00445 at 101.982 kb on + strand, within IAI46_00445 at 101.983 kb on - strand, within IAI46_00445 at 102.000 kb on + strand, within IAI46_00445 at 102.000 kb on + strand, within IAI46_00445 at 102.000 kb on + strand, within IAI46_00445 at 102.000 kb on + strand, within IAI46_00445 at 102.000 kb on + strand, within IAI46_00445 at 102.000 kb on + strand, within IAI46_00445 at 102.000 kb on + strand, within IAI46_00445 at 102.001 kb on - strand, within IAI46_00445 at 102.001 kb on - strand, within IAI46_00445 at 102.001 kb on - strand, within IAI46_00445 at 102.024 kb on + strand, within IAI46_00445 at 102.024 kb on + strand, within IAI46_00445 at 102.024 kb on + strand, within IAI46_00445 at 102.024 kb on + strand, within IAI46_00445 at 102.025 kb on - strand, within IAI46_00445 at 102.025 kb on - strand, within IAI46_00445 at 102.036 kb on + strand, within IAI46_00445 at 102.036 kb on + strand, within IAI46_00445 at 102.036 kb on + strand, within IAI46_00445 at 102.036 kb on + strand, within IAI46_00445 at 102.037 kb on - strand, within IAI46_00445 at 102.037 kb on - strand, within IAI46_00445 at 102.037 kb on - strand, within IAI46_00445 at 102.037 kb on - strand, within IAI46_00445 at 102.037 kb on - strand, within IAI46_00445 at 102.037 kb on - strand, within IAI46_00445 at 102.037 kb on - strand, within IAI46_00445 at 102.043 kb on + strand, within IAI46_00445 at 102.043 kb on + strand, within IAI46_00445 at 102.044 kb on - strand, within IAI46_00445 at 102.044 kb on - strand, within IAI46_00445 at 102.044 kb on - strand, within IAI46_00445 at 102.044 kb on - strand, within IAI46_00445 at 102.044 kb on - strand, within IAI46_00445 at 102.075 kb on + strand, within IAI46_00445 at 102.097 kb on + strand, within IAI46_00445 at 102.097 kb on - strand, within IAI46_00445 at 102.234 kb on - strand, within IAI46_00445 at 102.234 kb on - strand, within IAI46_00445 at 102.320 kb on + strand, within IAI46_00445 at 102.320 kb on + strand, within IAI46_00445 at 102.320 kb on + strand, within IAI46_00445 at 102.321 kb on - strand, within IAI46_00445 at 102.417 kb on + strand, within IAI46_00445 at 102.607 kb on + strand at 102.618 kb on - strand at 102.629 kb on - strand at 102.671 kb on - strand at 102.685 kb on + strand at 102.685 kb on + strand at 102.797 kb on + strand at 102.797 kb on + strand at 102.797 kb on + strand at 102.797 kb on + strand at 102.798 kb on - strand at 102.822 kb on + strand at 102.822 kb on + strand at 102.822 kb on + strand at 102.822 kb on + strand at 102.822 kb on + strand at 102.822 kb on + strand at 102.823 kb on - strand at 102.823 kb on - strand at 102.823 kb on - strand at 102.824 kb on + strand at 102.824 kb on + strand at 102.824 kb on + strand at 102.824 kb on + strand at 102.824 kb on + strand at 102.824 kb on + strand at 102.825 kb on - strand at 102.825 kb on - strand at 102.825 kb on - strand at 102.825 kb on - strand at 102.826 kb on + strand at 102.826 kb on + strand at 102.826 kb on + strand at 102.827 kb on - strand at 102.827 kb on - strand at 102.827 kb on - strand at 102.828 kb on + strand at 102.828 kb on + strand at 102.828 kb on + strand at 102.828 kb on + strand at 102.828 kb on + strand at 102.829 kb on - strand at 102.829 kb on - strand at 102.829 kb on - strand at 102.922 kb on - strand at 102.959 kb on + strand at 102.962 kb on - strand at 102.984 kb on + strand at 103.013 kb on - strand at 103.038 kb on - strand, within IAI46_00460 at 103.038 kb on - strand, within IAI46_00460 at 103.048 kb on - strand, within IAI46_00460 at 103.048 kb on - strand, within IAI46_00460 at 103.065 kb on + strand, within IAI46_00460 at 103.066 kb on - strand, within IAI46_00460 at 103.088 kb on - strand, within IAI46_00460 at 103.104 kb on + strand, within IAI46_00460 at 103.104 kb on + strand, within IAI46_00460 at 103.104 kb on + strand, within IAI46_00460 at 103.105 kb on - strand, within IAI46_00460 at 103.105 kb on - strand, within IAI46_00460 at 103.109 kb on - strand, within IAI46_00460 at 103.130 kb on - strand, within IAI46_00460 at 103.130 kb on - strand, within IAI46_00460 at 103.158 kb on + strand, within IAI46_00460 at 103.158 kb on + strand, within IAI46_00460 at 103.159 kb on - strand, within IAI46_00460 at 103.159 kb on - strand, within IAI46_00460 at 103.177 kb on + strand, within IAI46_00460 at 103.217 kb on + strand, within IAI46_00460 at 103.217 kb on + strand, within IAI46_00460 at 103.217 kb on + strand, within IAI46_00460 at 103.217 kb on + strand, within IAI46_00460 at 103.218 kb on - strand, within IAI46_00460 at 103.218 kb on - strand, within IAI46_00460 at 103.218 kb on - strand, within IAI46_00460 at 103.218 kb on - strand, within IAI46_00460 at 103.218 kb on - strand, within IAI46_00460 at 103.244 kb on - strand, within IAI46_00460 at 103.306 kb on + strand, within IAI46_00460 at 103.327 kb on + strand at 103.327 kb on + strand at 103.327 kb on + strand at 103.327 kb on + strand at 103.328 kb on - strand at 103.328 kb on - strand at 103.328 kb on - strand at 103.333 kb on + strand at 103.362 kb on + strand at 103.362 kb on + strand at 103.362 kb on + strand at 103.362 kb on + strand at 103.363 kb on - strand at 103.363 kb on - strand at 103.363 kb on - strand at 103.403 kb on + strand, within IAI46_00465 at 103.448 kb on + strand, within IAI46_00465 at 103.448 kb on + strand, within IAI46_00465 at 103.449 kb on - strand, within IAI46_00465 at 103.449 kb on - strand, within IAI46_00465 at 103.478 kb on - strand, within IAI46_00465 at 103.482 kb on + strand, within IAI46_00465 at 103.483 kb on - strand, within IAI46_00465 at 103.483 kb on - strand, within IAI46_00465 at 103.483 kb on - strand, within IAI46_00465 at 103.485 kb on + strand, within IAI46_00465 at 103.486 kb on - strand, within IAI46_00465 at 103.507 kb on + strand, within IAI46_00465 at 103.507 kb on + strand, within IAI46_00465 at 103.519 kb on + strand, within IAI46_00465 at 103.519 kb on + strand, within IAI46_00465 at 103.525 kb on + strand, within IAI46_00465 at 103.525 kb on + strand, within IAI46_00465 at 103.545 kb on + strand, within IAI46_00465 at 103.546 kb on - strand, within IAI46_00465
Per-strain Table
Position Strand Gene LocusTag Fraction Cadmium acetate 40 uM, aerobic remove 100,344 + IAI46_00440 0.48 +0.8 100,345 - IAI46_00440 0.48 +0.4 100,473 + IAI46_00440 0.56 +1.2 100,612 + IAI46_00440 0.65 +1.0 100,612 + IAI46_00440 0.65 -0.6 100,613 - IAI46_00440 0.65 +0.2 100,666 + IAI46_00440 0.68 -0.2 100,666 + IAI46_00440 0.68 +0.4 100,666 + IAI46_00440 0.68 -1.0 100,666 + IAI46_00440 0.68 -0.4 100,666 + IAI46_00440 0.68 +1.5 100,666 + IAI46_00440 0.68 -0.4 100,666 + IAI46_00440 0.68 +0.2 100,667 - IAI46_00440 0.69 -0.4 100,686 - IAI46_00440 0.70 +0.1 100,686 - IAI46_00440 0.70 +0.5 100,686 - IAI46_00440 0.70 -0.4 100,735 + IAI46_00440 0.73 -0.4 100,736 - IAI46_00440 0.73 +0.0 100,793 - IAI46_00440 0.77 -0.0 100,866 - IAI46_00440 0.82 -0.3 100,952 - IAI46_00440 0.87 -0.1 101,059 + +0.5 101,148 - -0.1 101,153 + -0.1 101,160 + -0.0 101,161 - -0.5 101,161 - +0.9 101,166 + +0.3 101,167 - -0.4 101,189 - -0.4 101,218 - +1.3 101,218 - -0.7 101,232 + -1.6 101,319 + +0.8 101,319 + +0.6 101,319 + -0.2 101,320 - +0.4 101,320 - -0.1 101,320 - +0.6 101,321 + +0.4 101,321 + -0.1 101,321 + +1.3 101,321 + +0.0 101,322 - +0.7 101,322 - +0.7 101,322 - -0.6 101,322 - +0.4 101,325 + +0.1 101,325 + -0.5 101,325 + +0.3 101,326 - -0.4 101,355 + +0.4 101,355 + +0.2 101,355 + +0.9 101,356 - -0.9 101,356 - -0.0 101,356 - +0.5 101,356 - -0.5 101,356 - +0.3 101,364 + -0.6 101,377 - +0.9 101,381 + -0.0 101,462 + IAI46_00445 0.16 -0.2 101,472 + IAI46_00445 0.17 -0.4 101,472 + IAI46_00445 0.17 +0.5 101,472 + IAI46_00445 0.17 +0.2 101,481 + IAI46_00445 0.17 +0.5 101,481 + IAI46_00445 0.17 +0.6 101,540 + IAI46_00445 0.22 +0.2 101,540 + IAI46_00445 0.22 +0.6 101,576 + IAI46_00445 0.24 -1.7 101,576 + IAI46_00445 0.24 +0.8 101,576 + IAI46_00445 0.24 +0.0 101,591 + IAI46_00445 0.26 -0.5 101,592 - IAI46_00445 0.26 -0.3 101,592 - IAI46_00445 0.26 +0.6 101,777 + IAI46_00445 0.40 +0.2 101,778 - IAI46_00445 0.40 -0.0 101,894 + IAI46_00445 0.48 -0.8 101,982 + IAI46_00445 0.55 -0.5 101,982 + IAI46_00445 0.55 +0.2 101,983 - IAI46_00445 0.55 -0.5 102,000 + IAI46_00445 0.56 +0.6 102,000 + IAI46_00445 0.56 +0.6 102,000 + IAI46_00445 0.56 +0.1 102,000 + IAI46_00445 0.56 -0.2 102,000 + IAI46_00445 0.56 +0.2 102,000 + IAI46_00445 0.56 -0.4 102,000 + IAI46_00445 0.56 -0.0 102,001 - IAI46_00445 0.56 +0.1 102,001 - IAI46_00445 0.56 -0.0 102,001 - IAI46_00445 0.56 +0.4 102,024 + IAI46_00445 0.58 -1.2 102,024 + IAI46_00445 0.58 +0.3 102,024 + IAI46_00445 0.58 +0.2 102,024 + IAI46_00445 0.58 -0.5 102,025 - IAI46_00445 0.58 +0.1 102,025 - IAI46_00445 0.58 +0.1 102,036 + IAI46_00445 0.59 +0.7 102,036 + IAI46_00445 0.59 +0.7 102,036 + IAI46_00445 0.59 +0.1 102,036 + IAI46_00445 0.59 -0.1 102,037 - IAI46_00445 0.59 +1.1 102,037 - IAI46_00445 0.59 -0.2 102,037 - IAI46_00445 0.59 -0.3 102,037 - IAI46_00445 0.59 +0.4 102,037 - IAI46_00445 0.59 +0.7 102,037 - IAI46_00445 0.59 +0.0 102,037 - IAI46_00445 0.59 +0.4 102,043 + IAI46_00445 0.60 +0.2 102,043 + IAI46_00445 0.60 +0.0 102,044 - IAI46_00445 0.60 -0.5 102,044 - IAI46_00445 0.60 -0.2 102,044 - IAI46_00445 0.60 +0.4 102,044 - IAI46_00445 0.60 -0.6 102,044 - IAI46_00445 0.60 -0.0 102,075 + IAI46_00445 0.62 -0.5 102,097 + IAI46_00445 0.64 +0.4 102,097 - IAI46_00445 0.64 -1.3 102,234 - IAI46_00445 0.74 -1.0 102,234 - IAI46_00445 0.74 -0.1 102,320 + IAI46_00445 0.80 +0.8 102,320 + IAI46_00445 0.80 -0.0 102,320 + IAI46_00445 0.80 -2.1 102,321 - IAI46_00445 0.80 +0.8 102,417 + IAI46_00445 0.88 -0.7 102,607 + +0.2 102,618 - +0.3 102,629 - -0.4 102,671 - -1.2 102,685 + +0.1 102,685 + +1.1 102,797 + -0.5 102,797 + -0.4 102,797 + -0.0 102,797 + +0.2 102,798 - -0.4 102,822 + -0.7 102,822 + -0.4 102,822 + +0.4 102,822 + -0.0 102,822 + +0.9 102,822 + +0.0 102,823 - -0.1 102,823 - -0.1 102,823 - +0.1 102,824 + +0.1 102,824 + -0.5 102,824 + +0.0 102,824 + +0.1 102,824 + +1.5 102,824 + +0.6 102,825 - -0.4 102,825 - -1.2 102,825 - +0.6 102,825 - +0.1 102,826 + +1.1 102,826 + -0.1 102,826 + +0.4 102,827 - +0.1 102,827 - -0.4 102,827 - +0.1 102,828 + +0.4 102,828 + +0.2 102,828 + +0.5 102,828 + -0.1 102,828 + -0.2 102,829 - +0.1 102,829 - -0.3 102,829 - +0.9 102,922 - +0.7 102,959 + -0.2 102,962 - +0.2 102,984 + +0.3 103,013 - +0.5 103,038 - IAI46_00460 0.12 +0.2 103,038 - IAI46_00460 0.12 -0.7 103,048 - IAI46_00460 0.15 +0.0 103,048 - IAI46_00460 0.15 +0.3 103,065 + IAI46_00460 0.20 -1.5 103,066 - IAI46_00460 0.20 +0.1 103,088 - IAI46_00460 0.26 -2.0 103,104 + IAI46_00460 0.31 +0.1 103,104 + IAI46_00460 0.31 -0.5 103,104 + IAI46_00460 0.31 +1.0 103,105 - IAI46_00460 0.31 +0.5 103,105 - IAI46_00460 0.31 +1.1 103,109 - IAI46_00460 0.32 -0.5 103,130 - IAI46_00460 0.38 -0.2 103,130 - IAI46_00460 0.38 -0.3 103,158 + IAI46_00460 0.46 -0.0 103,158 + IAI46_00460 0.46 -0.7 103,159 - IAI46_00460 0.46 +1.1 103,159 - IAI46_00460 0.46 +1.0 103,177 + IAI46_00460 0.51 -0.6 103,217 + IAI46_00460 0.62 +0.2 103,217 + IAI46_00460 0.62 -0.5 103,217 + IAI46_00460 0.62 +0.2 103,217 + IAI46_00460 0.62 +0.6 103,218 - IAI46_00460 0.63 +0.2 103,218 - IAI46_00460 0.63 -0.2 103,218 - IAI46_00460 0.63 -0.6 103,218 - IAI46_00460 0.63 +0.3 103,218 - IAI46_00460 0.63 +0.6 103,244 - IAI46_00460 0.70 -0.1 103,306 + IAI46_00460 0.87 -0.1 103,327 + +0.9 103,327 + -0.0 103,327 + +0.1 103,327 + -0.6 103,328 - -0.1 103,328 - -0.6 103,328 - -1.0 103,333 + +1.5 103,362 + +0.9 103,362 + -0.5 103,362 + +0.2 103,362 + +2.7 103,363 - -1.8 103,363 - +1.2 103,363 - +0.9 103,403 + IAI46_00465 0.22 +0.3 103,448 + IAI46_00465 0.37 -1.1 103,448 + IAI46_00465 0.37 -0.3 103,449 - IAI46_00465 0.37 +1.0 103,449 - IAI46_00465 0.37 +1.3 103,478 - IAI46_00465 0.47 -0.2 103,482 + IAI46_00465 0.48 -0.7 103,483 - IAI46_00465 0.49 +0.2 103,483 - IAI46_00465 0.49 -0.1 103,483 - IAI46_00465 0.49 -0.0 103,485 + IAI46_00465 0.49 -0.8 103,486 - IAI46_00465 0.50 +0.2 103,507 + IAI46_00465 0.57 -1.0 103,507 + IAI46_00465 0.57 -1.9 103,519 + IAI46_00465 0.61 +0.3 103,519 + IAI46_00465 0.61 -0.7 103,525 + IAI46_00465 0.63 -0.1 103,525 + IAI46_00465 0.63 +0.0 103,545 + IAI46_00465 0.70 -0.0 103,546 - IAI46_00465 0.70 +0.8
Or see this region's nucleotide sequence