Strain Fitness in Serratia liquefaciens MT49 around IAI46_00415

Experiment: Cadmium acetate 40 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_00410 and IAI46_00415 are separated by 3 nucleotidesIAI46_00415 and IAI46_00420 are separated by 112 nucleotidesIAI46_00420 and IAI46_00425 are separated by 157 nucleotides IAI46_00410: IAI46_00410 - carbohydrate porin, at 93,583 to 94,977 _00410 IAI46_00415: IAI46_00415 - bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase, at 94,981 to 95,580 _00415 IAI46_00420: IAI46_00420 - MarR family transcriptional regulator, at 95,693 to 96,157 _00420 IAI46_00425: IAI46_00425 - organic hydroperoxide resistance protein, at 96,315 to 96,740 _00425 Position (kb) 94 95 96Strain fitness (log2 ratio) -2 -1 0 1 2at 94.006 kb on - strand, within IAI46_00410at 94.213 kb on + strand, within IAI46_00410at 94.213 kb on + strand, within IAI46_00410at 94.213 kb on + strand, within IAI46_00410at 94.214 kb on - strand, within IAI46_00410at 94.214 kb on - strand, within IAI46_00410at 94.214 kb on - strand, within IAI46_00410at 94.214 kb on - strand, within IAI46_00410at 94.215 kb on + strand, within IAI46_00410at 94.216 kb on - strand, within IAI46_00410at 94.240 kb on - strand, within IAI46_00410at 94.240 kb on - strand, within IAI46_00410at 94.253 kb on - strand, within IAI46_00410at 94.253 kb on - strand, within IAI46_00410at 94.353 kb on + strand, within IAI46_00410at 94.353 kb on + strand, within IAI46_00410at 94.353 kb on + strand, within IAI46_00410at 94.354 kb on - strand, within IAI46_00410at 94.420 kb on + strand, within IAI46_00410at 94.422 kb on + strand, within IAI46_00410at 94.423 kb on - strand, within IAI46_00410at 94.465 kb on + strand, within IAI46_00410at 94.465 kb on + strand, within IAI46_00410at 94.552 kb on - strand, within IAI46_00410at 94.562 kb on + strand, within IAI46_00410at 94.563 kb on - strand, within IAI46_00410at 94.563 kb on - strand, within IAI46_00410at 94.606 kb on + strand, within IAI46_00410at 94.607 kb on - strand, within IAI46_00410at 94.607 kb on - strand, within IAI46_00410at 94.639 kb on + strand, within IAI46_00410at 94.639 kb on + strand, within IAI46_00410at 94.639 kb on + strand, within IAI46_00410at 94.639 kb on + strand, within IAI46_00410at 94.640 kb on - strand, within IAI46_00410at 94.640 kb on - strand, within IAI46_00410at 94.640 kb on - strand, within IAI46_00410at 94.640 kb on - strand, within IAI46_00410at 94.640 kb on - strand, within IAI46_00410at 94.641 kb on + strand, within IAI46_00410at 94.641 kb on + strand, within IAI46_00410at 94.642 kb on - strand, within IAI46_00410at 94.648 kb on + strand, within IAI46_00410at 94.649 kb on - strand, within IAI46_00410at 94.766 kb on - strand, within IAI46_00410at 94.795 kb on + strand, within IAI46_00410at 94.796 kb on - strand, within IAI46_00410at 94.796 kb on - strand, within IAI46_00410at 94.849 kb on + strandat 94.895 kb on + strandat 94.896 kb on - strandat 94.900 kb on + strandat 94.901 kb on - strandat 94.901 kb on - strandat 94.922 kb on + strandat 94.922 kb on + strandat 94.923 kb on - strandat 94.923 kb on - strandat 94.964 kb on + strandat 95.044 kb on - strand, within IAI46_00415at 95.044 kb on - strand, within IAI46_00415at 95.085 kb on + strand, within IAI46_00415at 95.085 kb on + strand, within IAI46_00415at 95.085 kb on + strand, within IAI46_00415at 95.086 kb on - strand, within IAI46_00415at 95.086 kb on - strand, within IAI46_00415at 95.086 kb on - strand, within IAI46_00415at 95.159 kb on + strand, within IAI46_00415at 95.160 kb on - strand, within IAI46_00415at 95.160 kb on - strand, within IAI46_00415at 95.563 kb on + strandat 95.563 kb on + strandat 95.563 kb on + strandat 95.563 kb on + strandat 95.563 kb on + strandat 95.564 kb on - strandat 95.564 kb on - strandat 95.581 kb on - strandat 95.626 kb on + strandat 95.627 kb on - strandat 95.627 kb on - strandat 95.636 kb on - strandat 95.640 kb on + strandat 95.769 kb on - strand, within IAI46_00420at 95.798 kb on + strand, within IAI46_00420at 95.798 kb on + strand, within IAI46_00420at 95.831 kb on + strand, within IAI46_00420at 95.832 kb on - strand, within IAI46_00420at 95.840 kb on + strand, within IAI46_00420at 95.860 kb on - strand, within IAI46_00420at 95.860 kb on - strand, within IAI46_00420at 96.103 kb on + strand, within IAI46_00420at 96.104 kb on - strand, within IAI46_00420at 96.107 kb on - strand, within IAI46_00420at 96.144 kb on + strandat 96.144 kb on + strandat 96.145 kb on - strandat 96.195 kb on + strandat 96.195 kb on + strandat 96.195 kb on + strandat 96.282 kb on + strandat 96.314 kb on + strandat 96.315 kb on - strandat 96.456 kb on - strand, within IAI46_00425

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Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium acetate 40 uM, aerobic
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94,006 - IAI46_00410 0.30 +0.6
94,213 + IAI46_00410 0.45 -1.0
94,213 + IAI46_00410 0.45 +0.4
94,213 + IAI46_00410 0.45 +1.8
94,214 - IAI46_00410 0.45 +0.0
94,214 - IAI46_00410 0.45 +0.6
94,214 - IAI46_00410 0.45 +1.3
94,214 - IAI46_00410 0.45 +0.2
94,215 + IAI46_00410 0.45 +0.9
94,216 - IAI46_00410 0.45 +0.2
94,240 - IAI46_00410 0.47 +0.4
94,240 - IAI46_00410 0.47 +0.0
94,253 - IAI46_00410 0.48 -0.4
94,253 - IAI46_00410 0.48 +0.4
94,353 + IAI46_00410 0.55 -0.0
94,353 + IAI46_00410 0.55 +0.0
94,353 + IAI46_00410 0.55 +0.4
94,354 - IAI46_00410 0.55 +0.5
94,420 + IAI46_00410 0.60 +0.4
94,422 + IAI46_00410 0.60 +0.7
94,423 - IAI46_00410 0.60 -0.6
94,465 + IAI46_00410 0.63 +0.1
94,465 + IAI46_00410 0.63 +0.3
94,552 - IAI46_00410 0.69 -0.6
94,562 + IAI46_00410 0.70 -0.2
94,563 - IAI46_00410 0.70 -0.3
94,563 - IAI46_00410 0.70 -0.8
94,606 + IAI46_00410 0.73 +0.4
94,607 - IAI46_00410 0.73 +0.1
94,607 - IAI46_00410 0.73 -0.3
94,639 + IAI46_00410 0.76 +0.7
94,639 + IAI46_00410 0.76 +0.4
94,639 + IAI46_00410 0.76 +0.0
94,639 + IAI46_00410 0.76 -1.1
94,640 - IAI46_00410 0.76 +0.2
94,640 - IAI46_00410 0.76 -0.5
94,640 - IAI46_00410 0.76 -0.1
94,640 - IAI46_00410 0.76 +0.9
94,640 - IAI46_00410 0.76 +0.5
94,641 + IAI46_00410 0.76 +0.4
94,641 + IAI46_00410 0.76 +0.6
94,642 - IAI46_00410 0.76 -0.2
94,648 + IAI46_00410 0.76 +0.4
94,649 - IAI46_00410 0.76 +0.0
94,766 - IAI46_00410 0.85 +0.1
94,795 + IAI46_00410 0.87 +0.1
94,796 - IAI46_00410 0.87 +0.8
94,796 - IAI46_00410 0.87 +0.0
94,849 + +0.1
94,895 + +0.4
94,896 - +0.8
94,900 + -0.7
94,901 - -0.1
94,901 - -0.1
94,922 + +0.1
94,922 + -0.1
94,923 - -1.1
94,923 - -1.1
94,964 + -0.4
95,044 - IAI46_00415 0.10 +0.4
95,044 - IAI46_00415 0.10 +1.0
95,085 + IAI46_00415 0.17 +0.2
95,085 + IAI46_00415 0.17 +0.9
95,085 + IAI46_00415 0.17 -2.0
95,086 - IAI46_00415 0.17 +0.2
95,086 - IAI46_00415 0.17 -0.2
95,086 - IAI46_00415 0.17 +0.1
95,159 + IAI46_00415 0.30 -0.0
95,160 - IAI46_00415 0.30 -0.4
95,160 - IAI46_00415 0.30 -0.6
95,563 + +0.1
95,563 + -1.4
95,563 + +0.2
95,563 + -0.1
95,563 + +0.5
95,564 - +0.4
95,564 - +0.2
95,581 - -0.1
95,626 + +0.0
95,627 - -0.3
95,627 - -0.5
95,636 - +1.0
95,640 + +0.4
95,769 - IAI46_00420 0.16 -0.6
95,798 + IAI46_00420 0.23 +0.5
95,798 + IAI46_00420 0.23 +0.5
95,831 + IAI46_00420 0.30 +0.6
95,832 - IAI46_00420 0.30 -0.5
95,840 + IAI46_00420 0.32 -0.3
95,860 - IAI46_00420 0.36 +0.7
95,860 - IAI46_00420 0.36 +1.4
96,103 + IAI46_00420 0.88 -0.5
96,104 - IAI46_00420 0.88 +0.8
96,107 - IAI46_00420 0.89 +1.2
96,144 + -0.2
96,144 + +0.3
96,145 - -0.3
96,195 + +1.0
96,195 + +0.2
96,195 + -0.0
96,282 + +0.4
96,314 + +0.4
96,315 - -0.2
96,456 - IAI46_00425 0.33 -0.1

Or see this region's nucleotide sequence