Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0615

Experiment: m.b. Chloride 1000 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0612 and Echvi_0613 are separated by 19 nucleotidesEchvi_0613 and Echvi_0614 are separated by 155 nucleotidesEchvi_0614 and Echvi_0615 overlap by 41 nucleotidesEchvi_0615 and Echvi_0616 are separated by 44 nucleotides Echvi_0612: Echvi_0612 - F0F1-type ATP synthase, subunit a, at 687,067 to 688,095 _0612 Echvi_0613: Echvi_0613 - hypothetical protein, at 688,115 to 688,468 _0613 Echvi_0614: Echvi_0614 - hypothetical protein, at 688,624 to 688,851 _0614 Echvi_0615: Echvi_0615 - Integral membrane protein CcmA involved in cell shape determination, at 688,811 to 689,218 _0615 Echvi_0616: Echvi_0616 - Membrane proteins related to metalloendopeptidases, at 689,263 to 690,141 _0616 Position (kb) 688 689 690Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 688.143 kb on - strandat 688.155 kb on - strand, within Echvi_0613at 688.155 kb on - strand, within Echvi_0613at 688.171 kb on - strand, within Echvi_0613at 688.180 kb on - strand, within Echvi_0613at 688.241 kb on - strand, within Echvi_0613at 688.252 kb on + strand, within Echvi_0613at 688.293 kb on - strand, within Echvi_0613at 688.424 kb on + strand, within Echvi_0613at 688.442 kb on + strandat 688.547 kb on + strandat 688.582 kb on - strandat 688.592 kb on - strandat 688.592 kb on - strandat 688.625 kb on + strandat 688.650 kb on + strand, within Echvi_0614at 688.662 kb on + strand, within Echvi_0614at 688.684 kb on + strand, within Echvi_0614at 688.685 kb on - strand, within Echvi_0614at 688.786 kb on + strand, within Echvi_0614at 688.786 kb on + strand, within Echvi_0614at 688.787 kb on - strand, within Echvi_0614at 688.787 kb on - strand, within Echvi_0614at 688.790 kb on + strand, within Echvi_0614at 688.790 kb on + strand, within Echvi_0614at 688.790 kb on + strand, within Echvi_0614at 688.791 kb on - strand, within Echvi_0614at 688.791 kb on - strand, within Echvi_0614at 688.795 kb on + strand, within Echvi_0614at 688.857 kb on - strand, within Echvi_0615at 688.882 kb on + strand, within Echvi_0615at 689.030 kb on + strand, within Echvi_0615at 689.030 kb on + strand, within Echvi_0615at 689.031 kb on - strand, within Echvi_0615at 689.031 kb on - strand, within Echvi_0615at 689.031 kb on - strand, within Echvi_0615at 689.031 kb on - strand, within Echvi_0615at 689.118 kb on - strand, within Echvi_0615at 689.118 kb on - strand, within Echvi_0615at 689.142 kb on - strand, within Echvi_0615at 689.154 kb on - strand, within Echvi_0615at 689.167 kb on + strand, within Echvi_0615at 689.180 kb on - strandat 689.204 kb on - strandat 689.252 kb on - strandat 689.252 kb on - strandat 689.257 kb on + strandat 689.258 kb on - strandat 689.258 kb on - strandat 689.278 kb on - strandat 689.309 kb on + strandat 689.309 kb on + strandat 689.310 kb on - strandat 689.310 kb on - strandat 689.314 kb on + strandat 689.315 kb on - strandat 689.315 kb on - strandat 689.315 kb on - strandat 689.355 kb on + strand, within Echvi_0616at 689.356 kb on - strand, within Echvi_0616at 689.356 kb on - strand, within Echvi_0616at 689.414 kb on - strand, within Echvi_0616at 689.416 kb on + strand, within Echvi_0616at 689.417 kb on - strand, within Echvi_0616at 689.424 kb on + strand, within Echvi_0616at 689.467 kb on + strand, within Echvi_0616at 689.474 kb on + strand, within Echvi_0616at 689.474 kb on + strand, within Echvi_0616at 689.474 kb on + strand, within Echvi_0616at 689.475 kb on - strand, within Echvi_0616at 689.475 kb on - strand, within Echvi_0616at 689.653 kb on - strand, within Echvi_0616at 689.653 kb on - strand, within Echvi_0616at 689.734 kb on + strandat 689.838 kb on + strand, within Echvi_0616at 689.842 kb on - strand, within Echvi_0616at 689.842 kb on - strand, within Echvi_0616at 689.849 kb on + strand, within Echvi_0616at 689.866 kb on + strand, within Echvi_0616at 689.867 kb on - strand, within Echvi_0616at 689.906 kb on + strand, within Echvi_0616at 689.906 kb on + strand, within Echvi_0616at 689.907 kb on - strand, within Echvi_0616at 689.907 kb on - strand, within Echvi_0616at 689.908 kb on + strand, within Echvi_0616at 689.974 kb on + strand, within Echvi_0616at 689.977 kb on + strand, within Echvi_0616at 689.977 kb on + strand, within Echvi_0616at 689.978 kb on - strand, within Echvi_0616at 690.010 kb on - strand, within Echvi_0616at 690.021 kb on + strand, within Echvi_0616at 690.050 kb on - strand, within Echvi_0616at 690.050 kb on - strand, within Echvi_0616at 690.098 kb on + strandat 690.102 kb on + strandat 690.134 kb on - strandat 690.155 kb on + strandat 690.171 kb on - strandat 690.174 kb on - strandat 690.190 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloride 1000 mM
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688,143 - -0.3
688,155 - Echvi_0613 0.11 -1.4
688,155 - Echvi_0613 0.11 +1.7
688,171 - Echvi_0613 0.16 -0.6
688,180 - Echvi_0613 0.18 +1.0
688,241 - Echvi_0613 0.36 +0.1
688,252 + Echvi_0613 0.39 -0.5
688,293 - Echvi_0613 0.50 -1.3
688,424 + Echvi_0613 0.87 -0.3
688,442 + -0.5
688,547 + -0.5
688,582 - +0.6
688,592 - -0.3
688,592 - -0.8
688,625 + +0.1
688,650 + Echvi_0614 0.11 +0.2
688,662 + Echvi_0614 0.17 -0.0
688,684 + Echvi_0614 0.26 -0.6
688,685 - Echvi_0614 0.27 -0.1
688,786 + Echvi_0614 0.71 -0.3
688,786 + Echvi_0614 0.71 -0.0
688,787 - Echvi_0614 0.71 +0.4
688,787 - Echvi_0614 0.71 -0.7
688,790 + Echvi_0614 0.73 -0.3
688,790 + Echvi_0614 0.73 +0.7
688,790 + Echvi_0614 0.73 +0.4
688,791 - Echvi_0614 0.73 -0.8
688,791 - Echvi_0614 0.73 +0.5
688,795 + Echvi_0614 0.75 +0.1
688,857 - Echvi_0615 0.11 -0.1
688,882 + Echvi_0615 0.17 +0.8
689,030 + Echvi_0615 0.54 -0.7
689,030 + Echvi_0615 0.54 -1.6
689,031 - Echvi_0615 0.54 -1.2
689,031 - Echvi_0615 0.54 -0.2
689,031 - Echvi_0615 0.54 +0.4
689,031 - Echvi_0615 0.54 -0.5
689,118 - Echvi_0615 0.75 -1.1
689,118 - Echvi_0615 0.75 -2.8
689,142 - Echvi_0615 0.81 -0.8
689,154 - Echvi_0615 0.84 -0.1
689,167 + Echvi_0615 0.87 -0.4
689,180 - +1.0
689,204 - +0.4
689,252 - +0.8
689,252 - -0.4
689,257 + -1.1
689,258 - -1.0
689,258 - -0.0
689,278 - -0.1
689,309 + -1.3
689,309 + +0.2
689,310 - +0.2
689,310 - +0.0
689,314 + -0.8
689,315 - -0.6
689,315 - -0.7
689,315 - +1.5
689,355 + Echvi_0616 0.10 +1.9
689,356 - Echvi_0616 0.11 +1.2
689,356 - Echvi_0616 0.11 -0.4
689,414 - Echvi_0616 0.17 +1.2
689,416 + Echvi_0616 0.17 +0.0
689,417 - Echvi_0616 0.18 +0.2
689,424 + Echvi_0616 0.18 +0.1
689,467 + Echvi_0616 0.23 -0.7
689,474 + Echvi_0616 0.24 -0.9
689,474 + Echvi_0616 0.24 -1.3
689,474 + Echvi_0616 0.24 +1.5
689,475 - Echvi_0616 0.24 -0.6
689,475 - Echvi_0616 0.24 -0.1
689,653 - Echvi_0616 0.44 -1.7
689,653 - Echvi_0616 0.44 +0.3
689,734 + -0.3
689,838 + Echvi_0616 0.65 -0.7
689,842 - Echvi_0616 0.66 +1.6
689,842 - Echvi_0616 0.66 -0.8
689,849 + Echvi_0616 0.67 -1.9
689,866 + Echvi_0616 0.69 -0.7
689,867 - Echvi_0616 0.69 -0.7
689,906 + Echvi_0616 0.73 -3.0
689,906 + Echvi_0616 0.73 -0.6
689,907 - Echvi_0616 0.73 -0.4
689,907 - Echvi_0616 0.73 -0.8
689,908 + Echvi_0616 0.73 -1.9
689,974 + Echvi_0616 0.81 +1.4
689,977 + Echvi_0616 0.81 -0.1
689,977 + Echvi_0616 0.81 -0.3
689,978 - Echvi_0616 0.81 +1.1
690,010 - Echvi_0616 0.85 -0.5
690,021 + Echvi_0616 0.86 +0.6
690,050 - Echvi_0616 0.90 -0.7
690,050 - Echvi_0616 0.90 +0.8
690,098 + +0.2
690,102 + -1.3
690,134 - +0.7
690,155 + +0.3
690,171 - +0.7
690,174 - +0.1
690,190 - -0.2

Or see this region's nucleotide sequence