Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0196

Experiment: m.b. Chloride 1000 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0194 and Echvi_0195 are separated by 65 nucleotidesEchvi_0195 and Echvi_0196 are separated by 82 nucleotidesEchvi_0196 and Echvi_0197 are separated by 13 nucleotidesEchvi_0197 and Echvi_0198 are separated by 56 nucleotides Echvi_0194: Echvi_0194 - Protein of unknown function (DUF3109)., at 211,187 to 211,837 _0194 Echvi_0195: Echvi_0195 - RNA, at 211,903 to 212,222 _0195 Echvi_0196: Echvi_0196 - Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 212,305 to 213,462 _0196 Echvi_0197: Echvi_0197 - hypothetical protein, at 213,476 to 213,595 _0197 Echvi_0198: Echvi_0198 - Coenzyme F390 synthetase, at 213,652 to 214,656 _0198 Position (kb) 212 213 214Strain fitness (log2 ratio) -2 -1 0 1 2at 211.379 kb on + strand, within Echvi_0194at 211.379 kb on + strand, within Echvi_0194at 211.379 kb on + strand, within Echvi_0194at 211.380 kb on - strand, within Echvi_0194at 211.380 kb on - strand, within Echvi_0194at 211.380 kb on - strand, within Echvi_0194at 211.380 kb on - strand, within Echvi_0194at 211.391 kb on + strand, within Echvi_0194at 211.409 kb on + strand, within Echvi_0194at 211.476 kb on + strand, within Echvi_0194at 211.502 kb on - strand, within Echvi_0194at 211.540 kb on + strand, within Echvi_0194at 211.553 kb on + strand, within Echvi_0194at 211.554 kb on - strand, within Echvi_0194at 211.581 kb on + strand, within Echvi_0194at 211.582 kb on - strand, within Echvi_0194at 211.594 kb on + strand, within Echvi_0194at 211.740 kb on - strand, within Echvi_0194at 211.742 kb on + strand, within Echvi_0194at 211.742 kb on + strand, within Echvi_0194at 211.743 kb on - strandat 211.743 kb on - strand, within Echvi_0194at 211.743 kb on - strand, within Echvi_0194at 211.743 kb on - strand, within Echvi_0194at 211.743 kb on - strand, within Echvi_0194at 211.745 kb on + strand, within Echvi_0194at 211.750 kb on + strand, within Echvi_0194at 211.751 kb on - strand, within Echvi_0194at 211.751 kb on - strand, within Echvi_0194at 211.751 kb on - strand, within Echvi_0194at 211.770 kb on - strand, within Echvi_0194at 211.843 kb on + strandat 211.843 kb on + strandat 211.843 kb on + strandat 211.845 kb on + strandat 212.300 kb on + strandat 212.300 kb on + strandat 212.322 kb on + strandat 212.408 kb on + strandat 212.408 kb on + strandat 212.408 kb on + strandat 212.427 kb on - strand, within Echvi_0196at 212.507 kb on - strand, within Echvi_0196at 212.630 kb on + strand, within Echvi_0196at 212.740 kb on - strand, within Echvi_0196at 212.800 kb on - strand, within Echvi_0196at 212.877 kb on + strand, within Echvi_0196at 212.878 kb on - strand, within Echvi_0196at 213.056 kb on + strand, within Echvi_0196at 213.299 kb on - strand, within Echvi_0196at 213.299 kb on - strand, within Echvi_0196at 213.406 kb on - strandat 213.485 kb on + strandat 213.485 kb on + strandat 213.513 kb on + strand, within Echvi_0197at 213.574 kb on + strand, within Echvi_0197at 213.577 kb on + strand, within Echvi_0197at 213.599 kb on - strandat 213.630 kb on + strandat 213.630 kb on + strandat 213.630 kb on + strandat 213.631 kb on - strandat 213.633 kb on + strandat 213.634 kb on - strandat 213.645 kb on + strandat 213.654 kb on - strandat 213.756 kb on + strand, within Echvi_0198at 213.790 kb on + strand, within Echvi_0198at 213.795 kb on + strand, within Echvi_0198at 213.795 kb on + strand, within Echvi_0198at 213.798 kb on + strand, within Echvi_0198at 213.879 kb on - strand, within Echvi_0198at 213.900 kb on - strand, within Echvi_0198at 214.039 kb on + strand, within Echvi_0198at 214.175 kb on + strand, within Echvi_0198at 214.221 kb on + strand, within Echvi_0198at 214.268 kb on + strand, within Echvi_0198at 214.313 kb on + strand, within Echvi_0198at 214.313 kb on + strand, within Echvi_0198at 214.349 kb on + strand, within Echvi_0198at 214.405 kb on - strand, within Echvi_0198at 214.462 kb on - strand, within Echvi_0198

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloride 1000 mM
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211,379 + Echvi_0194 0.29 +0.8
211,379 + Echvi_0194 0.29 +0.5
211,379 + Echvi_0194 0.29 +0.6
211,380 - Echvi_0194 0.30 +0.7
211,380 - Echvi_0194 0.30 -2.2
211,380 - Echvi_0194 0.30 -0.2
211,380 - Echvi_0194 0.30 -0.8
211,391 + Echvi_0194 0.31 -0.6
211,409 + Echvi_0194 0.34 -1.6
211,476 + Echvi_0194 0.44 -1.1
211,502 - Echvi_0194 0.48 -1.3
211,540 + Echvi_0194 0.54 +0.7
211,553 + Echvi_0194 0.56 -0.3
211,554 - Echvi_0194 0.56 +0.7
211,581 + Echvi_0194 0.61 -0.4
211,582 - Echvi_0194 0.61 -0.3
211,594 + Echvi_0194 0.63 +1.1
211,740 - Echvi_0194 0.85 +0.5
211,742 + Echvi_0194 0.85 -0.0
211,742 + Echvi_0194 0.85 +0.2
211,743 - +0.9
211,743 - Echvi_0194 0.85 -0.3
211,743 - Echvi_0194 0.85 +0.5
211,743 - Echvi_0194 0.85 +0.1
211,743 - Echvi_0194 0.85 -0.2
211,745 + Echvi_0194 0.86 -2.0
211,750 + Echvi_0194 0.86 +0.3
211,751 - Echvi_0194 0.87 -0.0
211,751 - Echvi_0194 0.87 -1.8
211,751 - Echvi_0194 0.87 -0.2
211,770 - Echvi_0194 0.90 -1.0
211,843 + -0.2
211,843 + +0.5
211,843 + -0.4
211,845 + +0.5
212,300 + +0.7
212,300 + -0.1
212,322 + +0.3
212,408 + -0.5
212,408 + +0.1
212,408 + -0.4
212,427 - Echvi_0196 0.11 +2.0
212,507 - Echvi_0196 0.17 +1.0
212,630 + Echvi_0196 0.28 +1.0
212,740 - Echvi_0196 0.38 +1.3
212,800 - Echvi_0196 0.43 +0.0
212,877 + Echvi_0196 0.49 +0.3
212,878 - Echvi_0196 0.49 +1.3
213,056 + Echvi_0196 0.65 +0.3
213,299 - Echvi_0196 0.86 +1.3
213,299 - Echvi_0196 0.86 +1.1
213,406 - -2.1
213,485 + -0.1
213,485 + +0.1
213,513 + Echvi_0197 0.31 +0.2
213,574 + Echvi_0197 0.82 -0.2
213,577 + Echvi_0197 0.84 -0.4
213,599 - -0.3
213,630 + -0.3
213,630 + +0.9
213,630 + -0.2
213,631 - -0.4
213,633 + -2.1
213,634 - +0.9
213,645 + -0.0
213,654 - -0.8
213,756 + Echvi_0198 0.10 -1.3
213,790 + Echvi_0198 0.14 -0.1
213,795 + Echvi_0198 0.14 +0.5
213,795 + Echvi_0198 0.14 -0.3
213,798 + Echvi_0198 0.15 +0.2
213,879 - Echvi_0198 0.23 -0.8
213,900 - Echvi_0198 0.25 -0.6
214,039 + Echvi_0198 0.39 -0.1
214,175 + Echvi_0198 0.52 -0.1
214,221 + Echvi_0198 0.57 -0.7
214,268 + Echvi_0198 0.61 -0.1
214,313 + Echvi_0198 0.66 -1.4
214,313 + Echvi_0198 0.66 -0.4
214,349 + Echvi_0198 0.69 +1.5
214,405 - Echvi_0198 0.75 -0.4
214,462 - Echvi_0198 0.81 -0.6

Or see this region's nucleotide sequence