Experiment: D-Sorbitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS24865 and ABIE40_RS24870 are separated by 51 nucleotides ABIE40_RS24870 and ABIE40_RS24875 are separated by 194 nucleotides
ABIE40_RS24865: ABIE40_RS24865 - rhamnose ABC transporter substrate-binding protein, at 1,129,087 to 1,130,082
_RS24865
ABIE40_RS24870: ABIE40_RS24870 - DeoR/GlpR family DNA-binding transcription regulator, at 1,130,134 to 1,130,946
_RS24870
ABIE40_RS24875: ABIE40_RS24875 - bifunctional rhamnulose-1-phosphate aldolase/short-chain dehydrogenase, at 1,131,141 to 1,133,237
_RS24875
Position (kb) 1130
1131 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1129.245 kb on - strand, within ABIE40_RS24865 at 1129.245 kb on - strand, within ABIE40_RS24865 at 1129.245 kb on - strand, within ABIE40_RS24865 at 1129.265 kb on + strand, within ABIE40_RS24865 at 1129.266 kb on - strand, within ABIE40_RS24865 at 1129.362 kb on - strand, within ABIE40_RS24865 at 1129.484 kb on + strand, within ABIE40_RS24865 at 1129.511 kb on + strand, within ABIE40_RS24865 at 1129.512 kb on - strand, within ABIE40_RS24865 at 1129.512 kb on - strand, within ABIE40_RS24865 at 1129.898 kb on + strand, within ABIE40_RS24865 at 1129.898 kb on + strand, within ABIE40_RS24865 at 1129.899 kb on - strand, within ABIE40_RS24865 at 1130.074 kb on + strand at 1130.075 kb on - strand at 1130.075 kb on - strand at 1130.075 kb on - strand at 1130.075 kb on - strand at 1130.105 kb on + strand at 1130.112 kb on - strand at 1130.112 kb on - strand at 1130.112 kb on - strand at 1130.444 kb on + strand, within ABIE40_RS24870 at 1130.501 kb on + strand, within ABIE40_RS24870 at 1130.502 kb on - strand, within ABIE40_RS24870 at 1130.502 kb on - strand, within ABIE40_RS24870 at 1130.502 kb on - strand, within ABIE40_RS24870 at 1130.967 kb on + strand at 1131.264 kb on + strand at 1131.264 kb on + strand at 1131.264 kb on + strand at 1131.265 kb on - strand at 1131.396 kb on + strand, within ABIE40_RS24875 at 1131.396 kb on + strand, within ABIE40_RS24875 at 1131.396 kb on + strand, within ABIE40_RS24875 at 1131.397 kb on - strand, within ABIE40_RS24875 at 1131.397 kb on - strand, within ABIE40_RS24875 at 1131.429 kb on + strand, within ABIE40_RS24875 at 1131.429 kb on + strand, within ABIE40_RS24875 at 1131.429 kb on + strand, within ABIE40_RS24875 at 1131.429 kb on + strand, within ABIE40_RS24875 at 1131.429 kb on + strand, within ABIE40_RS24875 at 1131.777 kb on + strand, within ABIE40_RS24875 at 1131.777 kb on + strand, within ABIE40_RS24875 at 1131.778 kb on - strand, within ABIE40_RS24875
Per-strain Table
Position Strand Gene LocusTag Fraction D-Sorbitol (C) remove 1,129,245 - ABIE40_RS24865 0.16 -0.2 1,129,245 - ABIE40_RS24865 0.16 +0.7 1,129,245 - ABIE40_RS24865 0.16 -0.6 1,129,265 + ABIE40_RS24865 0.18 +1.3 1,129,266 - ABIE40_RS24865 0.18 -0.2 1,129,362 - ABIE40_RS24865 0.28 -1.6 1,129,484 + ABIE40_RS24865 0.40 -0.7 1,129,511 + ABIE40_RS24865 0.43 -0.2 1,129,512 - ABIE40_RS24865 0.43 -0.0 1,129,512 - ABIE40_RS24865 0.43 +0.1 1,129,898 + ABIE40_RS24865 0.81 -0.1 1,129,898 + ABIE40_RS24865 0.81 -1.4 1,129,899 - ABIE40_RS24865 0.82 +0.2 1,130,074 + -0.9 1,130,075 - -0.5 1,130,075 - -0.0 1,130,075 - -0.1 1,130,075 - -0.4 1,130,105 + +0.5 1,130,112 - +0.8 1,130,112 - -0.6 1,130,112 - +0.2 1,130,444 + ABIE40_RS24870 0.38 +0.3 1,130,501 + ABIE40_RS24870 0.45 -0.3 1,130,502 - ABIE40_RS24870 0.45 -0.5 1,130,502 - ABIE40_RS24870 0.45 -0.3 1,130,502 - ABIE40_RS24870 0.45 +0.2 1,130,967 + -0.6 1,131,264 + -0.5 1,131,264 + -2.3 1,131,264 + -1.5 1,131,265 - -0.4 1,131,396 + ABIE40_RS24875 0.12 -0.1 1,131,396 + ABIE40_RS24875 0.12 -1.0 1,131,396 + ABIE40_RS24875 0.12 -2.6 1,131,397 - ABIE40_RS24875 0.12 +2.1 1,131,397 - ABIE40_RS24875 0.12 -1.0 1,131,429 + ABIE40_RS24875 0.14 -0.7 1,131,429 + ABIE40_RS24875 0.14 -1.4 1,131,429 + ABIE40_RS24875 0.14 -2.3 1,131,429 + ABIE40_RS24875 0.14 -1.2 1,131,429 + ABIE40_RS24875 0.14 +0.3 1,131,777 + ABIE40_RS24875 0.30 -1.9 1,131,777 + ABIE40_RS24875 0.30 -1.2 1,131,778 - ABIE40_RS24875 0.30 -1.8
Or see this region's nucleotide sequence