Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS06340

Experiment: D-Sorbitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS06335 and ABIE40_RS06340 are separated by 156 nucleotidesABIE40_RS06340 and ABIE40_RS06345 are separated by 12 nucleotidesABIE40_RS06345 and ABIE40_RS06350 are separated by 288 nucleotides ABIE40_RS06335: ABIE40_RS06335 - DUF2232 domain-containing protein, at 1,240,680 to 1,241,663 _RS06335 ABIE40_RS06340: ABIE40_RS06340 - 30S ribosomal protein S18, at 1,241,820 to 1,242,068 _RS06340 ABIE40_RS06345: ABIE40_RS06345 - 30S ribosomal protein S6, at 1,242,081 to 1,242,539 _RS06345 ABIE40_RS06350: ABIE40_RS06350 - aldo/keto reductase, at 1,242,828 to 1,243,871 _RS06350 Position (kb) 1241 1242 1243Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1241.075 kb on - strand, within ABIE40_RS06335at 1242.823 kb on + strandat 1242.823 kb on + strandat 1242.823 kb on + strandat 1242.824 kb on - strandat 1243.035 kb on - strand, within ABIE40_RS06350at 1243.036 kb on + strand, within ABIE40_RS06350at 1243.036 kb on + strand, within ABIE40_RS06350at 1243.036 kb on + strand, within ABIE40_RS06350at 1243.036 kb on + strand, within ABIE40_RS06350at 1243.036 kb on + strand, within ABIE40_RS06350at 1243.036 kb on + strand, within ABIE40_RS06350at 1243.037 kb on - strand, within ABIE40_RS06350at 1243.037 kb on - strand, within ABIE40_RS06350at 1243.037 kb on - strand, within ABIE40_RS06350at 1243.037 kb on - strand, within ABIE40_RS06350at 1243.037 kb on - strand, within ABIE40_RS06350

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol (C)
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1,241,075 - ABIE40_RS06335 0.40 +0.8
1,242,823 + -0.4
1,242,823 + -0.4
1,242,823 + -2.6
1,242,824 - -0.8
1,243,035 - ABIE40_RS06350 0.20 +0.2
1,243,036 + ABIE40_RS06350 0.20 -0.4
1,243,036 + ABIE40_RS06350 0.20 -1.4
1,243,036 + ABIE40_RS06350 0.20 -1.1
1,243,036 + ABIE40_RS06350 0.20 +0.1
1,243,036 + ABIE40_RS06350 0.20 +2.8
1,243,036 + ABIE40_RS06350 0.20 -0.0
1,243,037 - ABIE40_RS06350 0.20 -1.8
1,243,037 - ABIE40_RS06350 0.20 -0.5
1,243,037 - ABIE40_RS06350 0.20 -0.2
1,243,037 - ABIE40_RS06350 0.20 +0.3
1,243,037 - ABIE40_RS06350 0.20 -0.2

Or see this region's nucleotide sequence