Experiment: D-Sorbitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS01495 and ABIE40_RS01500 are separated by 73 nucleotides ABIE40_RS01500 and ABIE40_RS01505 are separated by 94 nucleotides
ABIE40_RS01495: ABIE40_RS01495 - bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC, at 293,913 to 295,124
_RS01495
ABIE40_RS01500: ABIE40_RS01500 - DMT family transporter, at 295,198 to 296,121
_RS01500
ABIE40_RS01505: ABIE40_RS01505 - LysR family transcriptional regulator, at 296,216 to 297,115
_RS01505
Position (kb) 295
296
297 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 295.133 kb on - strand at 295.162 kb on - strand at 295.162 kb on - strand at 295.619 kb on + strand, within ABIE40_RS01500 at 295.619 kb on + strand, within ABIE40_RS01500 at 295.619 kb on + strand, within ABIE40_RS01500 at 295.619 kb on + strand, within ABIE40_RS01500 at 295.620 kb on - strand, within ABIE40_RS01500 at 295.620 kb on - strand, within ABIE40_RS01500 at 295.620 kb on - strand, within ABIE40_RS01500 at 295.620 kb on - strand, within ABIE40_RS01500 at 295.620 kb on - strand, within ABIE40_RS01500 at 295.620 kb on - strand, within ABIE40_RS01500 at 295.620 kb on - strand, within ABIE40_RS01500 at 295.620 kb on - strand, within ABIE40_RS01500 at 295.620 kb on - strand, within ABIE40_RS01500 at 295.620 kb on - strand, within ABIE40_RS01500 at 295.871 kb on + strand, within ABIE40_RS01500 at 295.898 kb on + strand, within ABIE40_RS01500 at 295.898 kb on + strand, within ABIE40_RS01500 at 295.899 kb on - strand, within ABIE40_RS01500 at 295.899 kb on - strand, within ABIE40_RS01500 at 296.009 kb on + strand, within ABIE40_RS01500 at 296.175 kb on + strand at 296.175 kb on + strand at 296.176 kb on - strand at 296.217 kb on + strand at 296.217 kb on + strand at 296.218 kb on - strand at 296.218 kb on - strand at 296.255 kb on + strand at 296.256 kb on - strand at 296.256 kb on - strand at 296.286 kb on + strand at 296.286 kb on + strand at 296.287 kb on - strand at 296.287 kb on - strand at 296.287 kb on - strand at 296.287 kb on - strand at 296.287 kb on - strand at 296.358 kb on + strand, within ABIE40_RS01505 at 296.358 kb on + strand, within ABIE40_RS01505 at 296.359 kb on - strand, within ABIE40_RS01505 at 296.529 kb on + strand, within ABIE40_RS01505 at 296.592 kb on + strand, within ABIE40_RS01505 at 296.592 kb on + strand, within ABIE40_RS01505 at 296.592 kb on + strand, within ABIE40_RS01505 at 296.592 kb on + strand, within ABIE40_RS01505 at 296.592 kb on + strand, within ABIE40_RS01505 at 296.593 kb on - strand, within ABIE40_RS01505 at 296.593 kb on - strand, within ABIE40_RS01505 at 296.593 kb on - strand, within ABIE40_RS01505 at 296.593 kb on - strand, within ABIE40_RS01505 at 296.611 kb on + strand, within ABIE40_RS01505 at 296.611 kb on + strand, within ABIE40_RS01505 at 296.805 kb on + strand, within ABIE40_RS01505 at 296.805 kb on + strand, within ABIE40_RS01505 at 296.805 kb on + strand, within ABIE40_RS01505 at 296.806 kb on - strand, within ABIE40_RS01505 at 296.806 kb on - strand, within ABIE40_RS01505 at 296.910 kb on + strand, within ABIE40_RS01505 at 296.910 kb on + strand, within ABIE40_RS01505 at 296.910 kb on + strand, within ABIE40_RS01505 at 296.911 kb on - strand, within ABIE40_RS01505
Per-strain Table
Position Strand Gene LocusTag Fraction D-Sorbitol (C) remove 295,133 - -1.4 295,162 - -0.5 295,162 - -0.4 295,619 + ABIE40_RS01500 0.46 -1.1 295,619 + ABIE40_RS01500 0.46 +0.2 295,619 + ABIE40_RS01500 0.46 +0.7 295,619 + ABIE40_RS01500 0.46 -1.5 295,620 - ABIE40_RS01500 0.46 -0.2 295,620 - ABIE40_RS01500 0.46 +0.6 295,620 - ABIE40_RS01500 0.46 -0.8 295,620 - ABIE40_RS01500 0.46 +0.3 295,620 - ABIE40_RS01500 0.46 -0.0 295,620 - ABIE40_RS01500 0.46 -1.7 295,620 - ABIE40_RS01500 0.46 -0.8 295,620 - ABIE40_RS01500 0.46 -0.2 295,620 - ABIE40_RS01500 0.46 -0.9 295,620 - ABIE40_RS01500 0.46 -0.9 295,871 + ABIE40_RS01500 0.73 +0.0 295,898 + ABIE40_RS01500 0.76 +0.8 295,898 + ABIE40_RS01500 0.76 +1.5 295,899 - ABIE40_RS01500 0.76 -1.4 295,899 - ABIE40_RS01500 0.76 -0.8 296,009 + ABIE40_RS01500 0.88 -0.0 296,175 + -1.1 296,175 + +0.4 296,176 - -3.8 296,217 + +0.6 296,217 + -0.2 296,218 - -0.1 296,218 - +0.1 296,255 + +0.5 296,256 - +0.4 296,256 - +2.0 296,286 + -0.5 296,286 + -1.4 296,287 - -0.5 296,287 - +0.4 296,287 - -1.6 296,287 - +0.4 296,287 - +0.3 296,358 + ABIE40_RS01505 0.16 -0.5 296,358 + ABIE40_RS01505 0.16 -0.1 296,359 - ABIE40_RS01505 0.16 -0.7 296,529 + ABIE40_RS01505 0.35 -1.4 296,592 + ABIE40_RS01505 0.42 -0.3 296,592 + ABIE40_RS01505 0.42 -1.3 296,592 + ABIE40_RS01505 0.42 -0.4 296,592 + ABIE40_RS01505 0.42 -0.6 296,592 + ABIE40_RS01505 0.42 -0.0 296,593 - ABIE40_RS01505 0.42 +2.4 296,593 - ABIE40_RS01505 0.42 +0.8 296,593 - ABIE40_RS01505 0.42 -0.8 296,593 - ABIE40_RS01505 0.42 -0.5 296,611 + ABIE40_RS01505 0.44 -0.3 296,611 + ABIE40_RS01505 0.44 +0.5 296,805 + ABIE40_RS01505 0.65 -0.4 296,805 + ABIE40_RS01505 0.65 +0.1 296,805 + ABIE40_RS01505 0.65 +0.4 296,806 - ABIE40_RS01505 0.66 -0.2 296,806 - ABIE40_RS01505 0.66 +0.5 296,910 + ABIE40_RS01505 0.77 -0.0 296,910 + ABIE40_RS01505 0.77 +0.7 296,910 + ABIE40_RS01505 0.77 +0.0 296,911 - ABIE40_RS01505 0.77 -0.6
Or see this region's nucleotide sequence