Experiment: KB with Trimethoprim 15.6 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4601 and Psyr_4602 are separated by 272 nucleotides Psyr_4602 and Psyr_4603 are separated by 111 nucleotides Psyr_4603 and Psyr_4604 are separated by 154 nucleotides Psyr_4604 and Psyr_4605 are separated by 97 nucleotides Psyr_4605 and Psyr_4606 are separated by 105 nucleotides
Psyr_4601: Psyr_4601 - hypothetical protein, at 5,459,678 to 5,459,863
_4601
Psyr_4602: Psyr_4602 - hypothetical protein, at 5,460,136 to 5,460,579
_4602
Psyr_4603: Psyr_4603 - phage repressor protein, Serine peptidase, MEROPS family S24, at 5,460,691 to 5,461,380
_4603
Psyr_4604: Psyr_4604 - hypothetical protein, at 5,461,535 to 5,461,783
_4604
Psyr_4605: Psyr_4605 - transcriptional regulator PrtN, putative, at 5,461,881 to 5,462,147
_4605
Psyr_4606: Psyr_4606 - Outer membrane autotransporter barrel, at 5,462,253 to 5,464,175
_4606
Position (kb) 5460
5461
5462 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5459.713 kb on + strand, within Psyr_4601 at 5459.713 kb on + strand, within Psyr_4601 at 5459.713 kb on + strand, within Psyr_4601 at 5459.714 kb on - strand, within Psyr_4601 at 5459.714 kb on - strand, within Psyr_4601 at 5459.735 kb on + strand, within Psyr_4601 at 5459.805 kb on + strand, within Psyr_4601 at 5459.805 kb on + strand, within Psyr_4601 at 5459.805 kb on + strand, within Psyr_4601 at 5459.805 kb on + strand, within Psyr_4601 at 5459.806 kb on - strand, within Psyr_4601 at 5459.806 kb on - strand, within Psyr_4601 at 5459.865 kb on + strand at 5459.865 kb on + strand at 5459.865 kb on + strand at 5459.865 kb on + strand at 5459.865 kb on + strand at 5459.865 kb on + strand at 5459.865 kb on + strand at 5459.865 kb on + strand at 5459.865 kb on + strand at 5459.865 kb on + strand at 5459.865 kb on + strand at 5459.865 kb on + strand at 5459.866 kb on - strand at 5459.866 kb on - strand at 5459.866 kb on - strand at 5459.866 kb on - strand at 5459.866 kb on - strand at 5459.866 kb on - strand at 5459.866 kb on - strand at 5459.866 kb on - strand at 5459.866 kb on - strand at 5460.243 kb on - strand, within Psyr_4602 at 5460.311 kb on + strand, within Psyr_4602 at 5460.311 kb on + strand, within Psyr_4602 at 5460.312 kb on - strand, within Psyr_4602 at 5460.403 kb on + strand, within Psyr_4602 at 5460.403 kb on + strand, within Psyr_4602 at 5460.403 kb on + strand, within Psyr_4602 at 5460.403 kb on + strand, within Psyr_4602 at 5460.403 kb on + strand, within Psyr_4602 at 5460.403 kb on + strand, within Psyr_4602 at 5460.403 kb on + strand, within Psyr_4602 at 5460.403 kb on + strand, within Psyr_4602 at 5460.403 kb on + strand, within Psyr_4602 at 5460.403 kb on + strand, within Psyr_4602 at 5460.403 kb on + strand, within Psyr_4602 at 5460.403 kb on + strand, within Psyr_4602 at 5460.403 kb on + strand, within Psyr_4602 at 5460.403 kb on + strand, within Psyr_4602 at 5460.403 kb on + strand, within Psyr_4602 at 5460.403 kb on + strand, within Psyr_4602 at 5460.403 kb on + strand, within Psyr_4602 at 5460.403 kb on + strand, within Psyr_4602 at 5460.404 kb on - strand, within Psyr_4602 at 5460.404 kb on - strand, within Psyr_4602 at 5460.404 kb on - strand, within Psyr_4602 at 5460.404 kb on - strand, within Psyr_4602 at 5460.404 kb on - strand, within Psyr_4602 at 5460.404 kb on - strand, within Psyr_4602 at 5460.404 kb on - strand, within Psyr_4602 at 5460.404 kb on - strand, within Psyr_4602 at 5460.404 kb on - strand, within Psyr_4602 at 5460.404 kb on - strand, within Psyr_4602 at 5460.404 kb on - strand, within Psyr_4602 at 5460.404 kb on - strand, within Psyr_4602 at 5460.404 kb on - strand, within Psyr_4602 at 5460.404 kb on - strand, within Psyr_4602 at 5460.404 kb on - strand, within Psyr_4602 at 5460.405 kb on + strand, within Psyr_4602 at 5460.405 kb on + strand, within Psyr_4602 at 5460.405 kb on + strand, within Psyr_4602 at 5460.405 kb on + strand, within Psyr_4602 at 5460.405 kb on + strand, within Psyr_4602 at 5460.405 kb on + strand, within Psyr_4602 at 5460.405 kb on + strand, within Psyr_4602 at 5460.405 kb on + strand, within Psyr_4602 at 5460.405 kb on + strand, within Psyr_4602 at 5460.405 kb on + strand, within Psyr_4602 at 5460.405 kb on + strand, within Psyr_4602 at 5460.405 kb on + strand, within Psyr_4602 at 5460.406 kb on - strand, within Psyr_4602 at 5460.406 kb on - strand, within Psyr_4602 at 5460.406 kb on - strand, within Psyr_4602 at 5460.406 kb on - strand, within Psyr_4602 at 5460.406 kb on - strand, within Psyr_4602 at 5460.406 kb on - strand, within Psyr_4602 at 5460.406 kb on - strand, within Psyr_4602 at 5460.406 kb on - strand, within Psyr_4602 at 5460.406 kb on - strand, within Psyr_4602 at 5460.406 kb on - strand, within Psyr_4602 at 5460.406 kb on - strand, within Psyr_4602 at 5460.406 kb on - strand, within Psyr_4602 at 5460.407 kb on + strand, within Psyr_4602 at 5460.407 kb on + strand, within Psyr_4602 at 5460.407 kb on + strand, within Psyr_4602 at 5460.407 kb on + strand, within Psyr_4602 at 5460.407 kb on + strand, within Psyr_4602 at 5460.408 kb on - strand, within Psyr_4602 at 5460.408 kb on - strand, within Psyr_4602 at 5460.408 kb on - strand, within Psyr_4602 at 5460.408 kb on - strand, within Psyr_4602 at 5460.468 kb on - strand, within Psyr_4602 at 5460.468 kb on - strand, within Psyr_4602 at 5460.565 kb on + strand at 5460.565 kb on + strand at 5460.565 kb on + strand at 5460.565 kb on + strand at 5460.565 kb on + strand at 5460.694 kb on + strand at 5461.473 kb on + strand at 5461.474 kb on - strand at 5461.506 kb on - strand at 5461.575 kb on - strand, within Psyr_4604 at 5461.575 kb on - strand, within Psyr_4604 at 5461.766 kb on + strand at 5461.767 kb on - strand at 5461.767 kb on - strand at 5461.767 kb on - strand at 5461.821 kb on - strand at 5461.836 kb on + strand at 5461.837 kb on - strand at 5461.837 kb on - strand at 5461.841 kb on - strand at 5461.845 kb on + strand at 5461.846 kb on - strand at 5461.916 kb on - strand, within Psyr_4605 at 5461.916 kb on - strand, within Psyr_4605 at 5462.058 kb on - strand, within Psyr_4605 at 5462.091 kb on + strand, within Psyr_4605 at 5462.091 kb on + strand, within Psyr_4605 at 5462.092 kb on - strand, within Psyr_4605 at 5462.112 kb on + strand, within Psyr_4605 at 5462.112 kb on + strand, within Psyr_4605 at 5462.213 kb on + strand at 5462.213 kb on + strand at 5462.214 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Trimethoprim 15.6 ug/ml remove 5,459,713 + Psyr_4601 0.19 -0.7 5,459,713 + Psyr_4601 0.19 -1.3 5,459,713 + Psyr_4601 0.19 -0.6 5,459,714 - Psyr_4601 0.19 +0.4 5,459,714 - Psyr_4601 0.19 +1.0 5,459,735 + Psyr_4601 0.31 -0.4 5,459,805 + Psyr_4601 0.68 -0.4 5,459,805 + Psyr_4601 0.68 -1.0 5,459,805 + Psyr_4601 0.68 +1.1 5,459,805 + Psyr_4601 0.68 +0.4 5,459,806 - Psyr_4601 0.69 +0.1 5,459,806 - Psyr_4601 0.69 -1.8 5,459,865 + +0.2 5,459,865 + +0.3 5,459,865 + -0.2 5,459,865 + -0.3 5,459,865 + -0.3 5,459,865 + -0.1 5,459,865 + -0.0 5,459,865 + -0.0 5,459,865 + -0.0 5,459,865 + -0.9 5,459,865 + +0.3 5,459,865 + +0.7 5,459,866 - -0.7 5,459,866 - +0.5 5,459,866 - -1.6 5,459,866 - -0.0 5,459,866 - +1.0 5,459,866 - +1.3 5,459,866 - -0.4 5,459,866 - +0.8 5,459,866 - +1.3 5,460,243 - Psyr_4602 0.24 -0.5 5,460,311 + Psyr_4602 0.39 -0.9 5,460,311 + Psyr_4602 0.39 +1.4 5,460,312 - Psyr_4602 0.40 -0.0 5,460,403 + Psyr_4602 0.60 +0.4 5,460,403 + Psyr_4602 0.60 +0.3 5,460,403 + Psyr_4602 0.60 -1.3 5,460,403 + Psyr_4602 0.60 +1.0 5,460,403 + Psyr_4602 0.60 -1.3 5,460,403 + Psyr_4602 0.60 -1.0 5,460,403 + Psyr_4602 0.60 -1.2 5,460,403 + Psyr_4602 0.60 +0.6 5,460,403 + Psyr_4602 0.60 +1.2 5,460,403 + Psyr_4602 0.60 +0.2 5,460,403 + Psyr_4602 0.60 +0.2 5,460,403 + Psyr_4602 0.60 -0.2 5,460,403 + Psyr_4602 0.60 +1.3 5,460,403 + Psyr_4602 0.60 +0.4 5,460,403 + Psyr_4602 0.60 +1.6 5,460,403 + Psyr_4602 0.60 +2.3 5,460,403 + Psyr_4602 0.60 -0.4 5,460,403 + Psyr_4602 0.60 +0.4 5,460,404 - Psyr_4602 0.60 +1.0 5,460,404 - Psyr_4602 0.60 -0.1 5,460,404 - Psyr_4602 0.60 +0.7 5,460,404 - Psyr_4602 0.60 -0.1 5,460,404 - Psyr_4602 0.60 +1.5 5,460,404 - Psyr_4602 0.60 -1.5 5,460,404 - Psyr_4602 0.60 -0.6 5,460,404 - Psyr_4602 0.60 +0.8 5,460,404 - Psyr_4602 0.60 -0.0 5,460,404 - Psyr_4602 0.60 +0.6 5,460,404 - Psyr_4602 0.60 -0.2 5,460,404 - Psyr_4602 0.60 -0.4 5,460,404 - Psyr_4602 0.60 +0.4 5,460,404 - Psyr_4602 0.60 +0.7 5,460,404 - Psyr_4602 0.60 +0.5 5,460,405 + Psyr_4602 0.61 +0.2 5,460,405 + Psyr_4602 0.61 -0.2 5,460,405 + Psyr_4602 0.61 -0.2 5,460,405 + Psyr_4602 0.61 +0.3 5,460,405 + Psyr_4602 0.61 +0.3 5,460,405 + Psyr_4602 0.61 +0.7 5,460,405 + Psyr_4602 0.61 -0.5 5,460,405 + Psyr_4602 0.61 -0.6 5,460,405 + Psyr_4602 0.61 -1.1 5,460,405 + Psyr_4602 0.61 +2.0 5,460,405 + Psyr_4602 0.61 -1.6 5,460,405 + Psyr_4602 0.61 -0.9 5,460,406 - Psyr_4602 0.61 +2.2 5,460,406 - Psyr_4602 0.61 +0.4 5,460,406 - Psyr_4602 0.61 -0.6 5,460,406 - Psyr_4602 0.61 +1.0 5,460,406 - Psyr_4602 0.61 +0.6 5,460,406 - Psyr_4602 0.61 +0.5 5,460,406 - Psyr_4602 0.61 -0.6 5,460,406 - Psyr_4602 0.61 +0.3 5,460,406 - Psyr_4602 0.61 +0.6 5,460,406 - Psyr_4602 0.61 +0.2 5,460,406 - Psyr_4602 0.61 +1.6 5,460,406 - Psyr_4602 0.61 +1.0 5,460,407 + Psyr_4602 0.61 +0.0 5,460,407 + Psyr_4602 0.61 +1.6 5,460,407 + Psyr_4602 0.61 -0.0 5,460,407 + Psyr_4602 0.61 +1.1 5,460,407 + Psyr_4602 0.61 +0.3 5,460,408 - Psyr_4602 0.61 -0.9 5,460,408 - Psyr_4602 0.61 -0.9 5,460,408 - Psyr_4602 0.61 -1.2 5,460,408 - Psyr_4602 0.61 +0.2 5,460,468 - Psyr_4602 0.75 -0.0 5,460,468 - Psyr_4602 0.75 +0.2 5,460,565 + -0.2 5,460,565 + +0.0 5,460,565 + +1.2 5,460,565 + +0.4 5,460,565 + +0.2 5,460,694 + +0.2 5,461,473 + +1.8 5,461,474 - +0.5 5,461,506 - +1.7 5,461,575 - Psyr_4604 0.16 +1.0 5,461,575 - Psyr_4604 0.16 +0.4 5,461,766 + -0.5 5,461,767 - +2.7 5,461,767 - -0.3 5,461,767 - -0.2 5,461,821 - -1.0 5,461,836 + -0.0 5,461,837 - -0.5 5,461,837 - -1.0 5,461,841 - +1.2 5,461,845 + -1.8 5,461,846 - -0.3 5,461,916 - Psyr_4605 0.13 -0.5 5,461,916 - Psyr_4605 0.13 -0.0 5,462,058 - Psyr_4605 0.66 +0.7 5,462,091 + Psyr_4605 0.79 -1.3 5,462,091 + Psyr_4605 0.79 +0.3 5,462,092 - Psyr_4605 0.79 -0.6 5,462,112 + Psyr_4605 0.87 -0.9 5,462,112 + Psyr_4605 0.87 -0.6 5,462,213 + +1.4 5,462,213 + +0.7 5,462,214 - +1.3
Or see this region's nucleotide sequence