Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_3429

Experiment: KB with Trimethoprim 15.6 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Trimethoprim 15.6 ug/ml
4,091,235	+				+0.5
4,091,236	-				+3.0
4,091,245	+				-0.8
4,091,469	+		Psyr_3427	0.58	-1.3
4,091,470	-		Psyr_3427	0.59	+0.2
4,091,470	-		Psyr_3427	0.59	-0.4
4,091,470	-		Psyr_3427	0.59	-0.1
4,091,578	+		Psyr_3427	0.86	+1.3
4,091,578	+		Psyr_3427	0.86	+1.9
4,091,578	+		Psyr_3427	0.86	-2.6
4,091,578	+		Psyr_3427	0.86	-2.5
4,091,578	+		Psyr_3427	0.86	-2.1
4,091,578	+		Psyr_3427	0.86	-3.4
4,091,578	+		Psyr_3427	0.86	+0.7
4,091,578	+		Psyr_3427	0.86	+0.8
4,091,578	+		Psyr_3427	0.86	-1.6
4,091,579	-		Psyr_3427	0.86	-1.5
4,091,579	-		Psyr_3427	0.86	-1.2
4,091,579	-		Psyr_3427	0.86	-1.2
4,091,579	-		Psyr_3427	0.86	-0.6
4,091,579	-		Psyr_3427	0.86	-0.1
4,091,622	-				+1.0
4,091,796	+		Psyr_3428	0.33	-0.7
4,091,796	+		Psyr_3428	0.33	+0.1
4,091,797	-		Psyr_3428	0.34	+0.2
4,091,797	-		Psyr_3428	0.34	+0.0
4,091,870	-		Psyr_3428	0.49	+0.4
4,091,960	+		Psyr_3428	0.68	-0.8
4,091,960	+		Psyr_3428	0.68	-1.2
4,091,961	-		Psyr_3428	0.68	+0.3
4,091,964	+		Psyr_3428	0.68	-1.2
4,091,964	+		Psyr_3428	0.68	-1.2
4,091,964	+		Psyr_3428	0.68	-2.6
4,091,964	+		Psyr_3428	0.68	-0.3
4,091,965	-		Psyr_3428	0.69	-0.3
4,091,965	-		Psyr_3428	0.69	-1.1
4,091,965	-		Psyr_3428	0.69	+0.7
4,092,001	-		Psyr_3428	0.76	-0.6
4,092,026	+		Psyr_3428	0.81	-1.1
4,092,026	+		Psyr_3428	0.81	-0.2
4,092,027	-		Psyr_3428	0.81	-0.0
4,092,027	-		Psyr_3428	0.81	+0.5
4,092,027	-		Psyr_3428	0.81	+0.1
4,092,027	-		Psyr_3428	0.81	+0.0
4,092,080	-				-0.5
4,092,109	+				+1.1
4,092,109	+				-0.7
4,092,109	+				-2.2
4,092,109	+				-1.1
4,092,109	+				-2.7
4,092,110	-				-0.5
4,092,110	-				-0.1
4,092,110	-				-0.0
4,092,174	+				-3.2
4,092,174	+				-0.3
4,092,175	-				-0.3
4,092,393	+		Psyr_3429	0.24	+0.4
4,092,393	+		Psyr_3429	0.24	+1.2
4,092,394	-		Psyr_3429	0.24	-0.6
4,092,825	-		Psyr_3429	0.72	+0.0
4,092,978	+		Psyr_3429	0.89	+0.9
4,093,028	+				+0.1
4,093,028	+				+1.3
4,093,028	+				+1.0
4,093,029	-				+0.6
4,093,034	+				+0.4
4,093,034	+				+0.0
4,093,035	-				+1.4
4,093,035	-				+0.7
4,093,035	-				+0.1
4,093,088	-				+0.9
4,093,088	-				+0.1
4,093,130	+				-0.3
4,093,130	+				-1.9
4,093,130	+				-0.3
4,093,130	+				+0.1
4,093,130	+				+0.4
4,093,131	-				-0.3
4,093,131	-				+0.2
4,093,186	+				+0.7
4,093,186	+				+0.1
4,093,187	-				-2.0
4,093,187	-				+0.8
4,093,187	-				-0.7
4,093,187	-				-0.5
4,093,187	-				-0.4
4,093,250	-		Psyr_3430	0.13	+1.4
4,093,296	+		Psyr_3430	0.18	+0.3
4,093,296	+		Psyr_3430	0.18	-1.0
4,093,296	+		Psyr_3430	0.18	-1.0
4,093,297	-		Psyr_3430	0.19	+0.2
4,093,297	-		Psyr_3430	0.19	+0.5
4,093,297	-		Psyr_3430	0.19	+1.0
4,093,297	-		Psyr_3430	0.19	+1.3
4,093,297	-		Psyr_3430	0.19	+0.2
4,093,297	-		Psyr_3430	0.19	+0.6
4,093,297	-		Psyr_3430	0.19	+1.7
4,093,395	+		Psyr_3430	0.31	-2.2
4,093,395	+		Psyr_3430	0.31	-0.2
4,093,396	-		Psyr_3430	0.31	-0.1
4,093,438	+		Psyr_3430	0.36	+1.6
4,093,567	-		Psyr_3430	0.53	-0.6
4,093,674	-		Psyr_3430	0.66	-0.9
4,093,684	+		Psyr_3430	0.68	+0.0
4,093,684	+		Psyr_3430	0.68	-0.5
4,093,684	+		Psyr_3430	0.68	+0.1
4,093,744	+		Psyr_3430	0.75	-0.6
4,093,789	+		Psyr_3430	0.81	-0.3
4,093,800	+		Psyr_3430	0.82	-0.1
4,093,800	+		Psyr_3430	0.82	+0.8
4,093,940	+				-1.6
4,093,941	-				+0.0
4,093,986	+				+0.5