Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_3346

Experiment: KB with Trimethoprim 15.6 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Trimethoprim 15.6 ug/ml
4,001,616	+		Psyr_3345	0.60	+0.5
4,001,617	-		Psyr_3345	0.60	-0.9
4,001,617	-		Psyr_3345	0.60	+0.1
4,001,617	-		Psyr_3345	0.60	+1.0
4,001,682	+		Psyr_3345	0.63	-0.2
4,001,683	-		Psyr_3345	0.63	+0.1
4,001,683	-		Psyr_3345	0.63	+0.2
4,001,683	-		Psyr_3345	0.63	-0.5
4,001,726	+		Psyr_3345	0.65	-0.3
4,001,726	+		Psyr_3345	0.65	+0.3
4,001,727	-		Psyr_3345	0.65	-1.3
4,001,747	+		Psyr_3345	0.66	+0.5
4,001,747	+		Psyr_3345	0.66	+0.3
4,001,748	-		Psyr_3345	0.66	+0.4
4,001,749	+		Psyr_3345	0.66	+0.2
4,001,749	+		Psyr_3345	0.66	+0.6
4,001,749	+		Psyr_3345	0.66	+0.4
4,001,749	+		Psyr_3345	0.66	-0.1
4,001,749	+		Psyr_3345	0.66	-0.4
4,001,749	+		Psyr_3345	0.66	+0.3
4,001,750	-		Psyr_3345	0.66	-1.0
4,001,750	-		Psyr_3345	0.66	-0.1
4,001,750	-		Psyr_3345	0.66	-1.3
4,001,750	-		Psyr_3345	0.66	-0.9
4,001,750	-		Psyr_3345	0.66	-0.3
4,001,750	-		Psyr_3345	0.66	-1.4
4,001,750	-		Psyr_3345	0.66	-1.3
4,001,811	+		Psyr_3345	0.69	-0.3
4,001,811	+		Psyr_3345	0.69	-1.3
4,001,811	+		Psyr_3345	0.69	-0.7
4,001,811	+		Psyr_3345	0.69	-0.3
4,001,812	-		Psyr_3345	0.69	-1.0
4,001,812	-		Psyr_3345	0.69	-1.1
4,001,812	-		Psyr_3345	0.69	+1.3
4,001,812	-		Psyr_3345	0.69	-0.2
4,001,904	+		Psyr_3345	0.74	+1.4
4,001,904	+		Psyr_3345	0.74	+1.0
4,001,905	-		Psyr_3345	0.74	+0.2
4,001,905	-		Psyr_3345	0.74	-0.1
4,001,905	-		Psyr_3345	0.74	+0.0
4,001,950	+		Psyr_3345	0.76	-1.2
4,001,950	+		Psyr_3345	0.76	-0.6
4,001,950	+		Psyr_3345	0.76	-0.4
4,001,951	-		Psyr_3345	0.76	+0.7
4,001,951	-		Psyr_3345	0.76	-0.3
4,001,951	-		Psyr_3345	0.76	-2.1
4,001,951	-		Psyr_3345	0.76	+0.1
4,002,078	+		Psyr_3345	0.82	-1.7
4,002,078	+		Psyr_3345	0.82	-1.0
4,002,078	+		Psyr_3345	0.82	+0.6
4,002,078	+		Psyr_3345	0.82	-2.3
4,002,079	-		Psyr_3345	0.82	-0.9
4,002,079	-		Psyr_3345	0.82	-0.6
4,002,079	-		Psyr_3345	0.82	-0.6
4,002,079	-		Psyr_3345	0.82	-0.9
4,002,079	-		Psyr_3345	0.82	-0.3
4,002,079	-		Psyr_3345	0.82	+0.7
4,002,079	-		Psyr_3345	0.82	-1.6
4,002,079	-		Psyr_3345	0.82	-0.2
4,002,079	-		Psyr_3345	0.82	-0.9
4,002,084	+		Psyr_3345	0.82	+2.3
4,002,084	+		Psyr_3345	0.82	-0.4
4,002,084	+		Psyr_3345	0.82	-0.5
4,002,084	+		Psyr_3345	0.82	+0.2
4,002,085	-		Psyr_3345	0.82	-1.3
4,002,085	-		Psyr_3345	0.82	-0.6
4,002,092	+		Psyr_3345	0.82	+0.9
4,002,092	+		Psyr_3345	0.82	-0.0
4,002,092	+		Psyr_3345	0.82	+0.3
4,002,093	-		Psyr_3345	0.82	-0.3
4,002,231	+		Psyr_3345	0.89	+0.7
4,002,231	+		Psyr_3345	0.89	-0.6
4,002,231	+		Psyr_3345	0.89	+0.7
4,002,270	+				+0.9
4,002,270	+				-0.3
4,002,270	+				+0.2
4,002,270	+				-0.9
4,002,270	+				+0.9
4,002,271	-				+0.0
4,002,271	-				-1.7
4,002,271	-				-0.3
4,002,271	-				+0.8
4,002,283	-				-0.3
4,002,283	-				-0.1
4,002,283	-				-0.5
4,002,331	-				-0.0
4,002,332	+				+0.3
4,002,333	-				-0.8
4,002,333	-				-0.3
4,002,378	+				-0.8
4,002,378	+				+1.5
4,002,379	-				-0.9
4,002,379	-				-1.3
4,002,462	+				+1.1
4,002,462	+				+0.1
4,002,463	-				-1.0
4,002,463	-				-0.2
4,002,463	-				-0.8
4,002,463	-				+0.1
4,002,463	-				-0.4
4,002,463	-				+0.0
4,002,573	-				+0.3
4,002,826	-		Psyr_3346	0.58	-0.1
4,002,826	-		Psyr_3346	0.58	+2.2
4,002,886	+		Psyr_3346	0.70	-2.3
4,002,886	+		Psyr_3346	0.70	-0.1
4,002,887	-		Psyr_3346	0.70	+1.1
4,002,887	-		Psyr_3346	0.70	+0.4
4,002,887	-		Psyr_3346	0.70	-1.0
4,002,887	-		Psyr_3346	0.70	+0.5
4,002,887	-		Psyr_3346	0.70	+0.1
4,003,044	+				-0.1
4,003,044	+				+0.4
4,003,045	-				-1.1
4,003,045	-				+1.3
4,003,045	-				-0.4
4,003,111	+				+0.3
4,003,111	+				-0.8
4,003,111	+				-0.2
4,003,111	+				-0.3
4,003,112	-				+0.1
4,003,112	-				-0.2
4,003,112	-				-0.0
4,003,112	-				+1.5
4,003,112	-				-0.6
4,003,115	+				-0.1
4,003,115	+				+0.3
4,003,115	+				+0.2
4,003,115	+				-1.6
4,003,115	+				-0.7
4,003,116	-				+0.7
4,003,116	-				-1.1
4,003,132	+				+0.7
4,003,132	+				-1.0
4,003,361	+		Psyr_3347	0.21	-0.2
4,003,361	+		Psyr_3347	0.21	-0.7
4,003,361	+		Psyr_3347	0.21	-0.4
4,003,361	+		Psyr_3347	0.21	+0.9
4,003,362	-		Psyr_3347	0.22	-3.1
4,003,362	-		Psyr_3347	0.22	-1.0
4,003,362	-		Psyr_3347	0.22	-0.3
4,003,362	-		Psyr_3347	0.22	-0.2
4,003,362	-		Psyr_3347	0.22	+1.0
4,003,362	-		Psyr_3347	0.22	-1.1
4,003,362	-		Psyr_3347	0.22	+0.0
4,003,362	-		Psyr_3347	0.22	-1.1
4,003,363	+		Psyr_3347	0.22	+0.7
4,003,363	+		Psyr_3347	0.22	+0.2
4,003,363	+		Psyr_3347	0.22	-0.6
4,003,367	+		Psyr_3347	0.22	+1.0
4,003,367	+		Psyr_3347	0.22	-0.4
4,003,367	+		Psyr_3347	0.22	-0.6
4,003,368	-		Psyr_3347	0.22	-0.1
4,003,368	-		Psyr_3347	0.22	-0.4
4,003,368	-		Psyr_3347	0.22	+0.5
4,003,368	-		Psyr_3347	0.22	-0.5
4,003,368	-		Psyr_3347	0.22	-1.4
4,003,525	+		Psyr_3347	0.48	-1.5
4,003,525	+		Psyr_3347	0.48	-0.0
4,003,604	+		Psyr_3347	0.61	-0.1
4,003,605	-		Psyr_3347	0.61	-0.9
4,003,605	-		Psyr_3347	0.61	+0.5
4,003,605	-		Psyr_3347	0.61	-1.4
4,003,639	+		Psyr_3347	0.66	+1.4
4,003,640	-		Psyr_3347	0.67	+1.2
4,003,640	-		Psyr_3347	0.67	-0.9
4,003,886	-				-1.0
4,003,950	+				+0.3
4,003,974	+				+0.4
4,003,974	+				+0.1
4,003,974	+				+0.4
4,003,974	+				-1.2
4,003,975	-				+1.1