Experiment: KB with Trimethoprim 15.6 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0783 and Psyr_0784 are separated by 9 nucleotides Psyr_0784 and Psyr_0785 are separated by 36 nucleotides Psyr_0785 and Psyr_0786 are separated by 30 nucleotides
Psyr_0783: Psyr_0783 - MCP methyltransferase, CheR-type, at 889,493 to 890,302
_0783
Psyr_0784: Psyr_0784 - CheW-like protein, at 890,312 to 890,851
_0784
Psyr_0785: Psyr_0785 - Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer, at 890,888 to 892,543
_0785
Psyr_0786: Psyr_0786 - CheW-like protein:ATP-binding region, ATPase-like:Signal transducing histidine kinase, homodimeric:Hpt, at 892,574 to 894,691
_0786
Position (kb) 890
891
892
893 Strain fitness (log2 ratio) -2
-1
0
1
2 at 889.947 kb on + strand, within Psyr_0783 at 890.064 kb on + strand, within Psyr_0783 at 890.064 kb on + strand, within Psyr_0783 at 890.065 kb on - strand, within Psyr_0783 at 890.151 kb on + strand, within Psyr_0783 at 890.151 kb on + strand, within Psyr_0783 at 890.151 kb on + strand, within Psyr_0783 at 890.151 kb on + strand, within Psyr_0783 at 890.151 kb on + strand, within Psyr_0783 at 890.151 kb on + strand, within Psyr_0783 at 890.167 kb on - strand, within Psyr_0783 at 890.244 kb on + strand at 890.245 kb on - strand at 890.293 kb on + strand at 890.293 kb on + strand at 891.456 kb on + strand, within Psyr_0785 at 891.956 kb on + strand, within Psyr_0785 at 891.956 kb on + strand, within Psyr_0785 at 891.957 kb on - strand, within Psyr_0785 at 892.015 kb on + strand, within Psyr_0785 at 892.167 kb on + strand, within Psyr_0785 at 892.219 kb on + strand, within Psyr_0785 at 892.220 kb on - strand, within Psyr_0785 at 892.236 kb on + strand, within Psyr_0785 at 892.236 kb on + strand, within Psyr_0785 at 892.236 kb on + strand, within Psyr_0785 at 892.236 kb on + strand, within Psyr_0785 at 892.237 kb on - strand, within Psyr_0785 at 892.530 kb on + strand at 892.530 kb on + strand at 892.549 kb on + strand at 892.549 kb on + strand at 892.550 kb on - strand at 892.550 kb on - strand at 892.550 kb on - strand at 892.550 kb on - strand at 892.631 kb on + strand at 892.631 kb on + strand at 892.631 kb on + strand at 892.632 kb on - strand at 892.632 kb on - strand at 892.632 kb on - strand at 892.632 kb on - strand at 892.873 kb on - strand, within Psyr_0786 at 892.986 kb on + strand, within Psyr_0786 at 892.986 kb on + strand, within Psyr_0786 at 892.986 kb on + strand, within Psyr_0786 at 892.986 kb on + strand, within Psyr_0786 at 892.986 kb on + strand, within Psyr_0786 at 892.987 kb on - strand, within Psyr_0786 at 892.987 kb on - strand, within Psyr_0786 at 892.987 kb on - strand, within Psyr_0786 at 892.987 kb on - strand, within Psyr_0786 at 892.987 kb on - strand, within Psyr_0786 at 892.987 kb on - strand, within Psyr_0786 at 893.110 kb on + strand, within Psyr_0786 at 893.110 kb on + strand, within Psyr_0786 at 893.111 kb on - strand, within Psyr_0786 at 893.111 kb on - strand, within Psyr_0786 at 893.206 kb on - strand, within Psyr_0786
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Trimethoprim 15.6 ug/ml remove 889,947 + Psyr_0783 0.56 +0.5 890,064 + Psyr_0783 0.70 +0.3 890,064 + Psyr_0783 0.70 +0.9 890,065 - Psyr_0783 0.71 +0.3 890,151 + Psyr_0783 0.81 -0.2 890,151 + Psyr_0783 0.81 -0.9 890,151 + Psyr_0783 0.81 +0.5 890,151 + Psyr_0783 0.81 +0.4 890,151 + Psyr_0783 0.81 +0.9 890,151 + Psyr_0783 0.81 -0.1 890,167 - Psyr_0783 0.83 -0.8 890,244 + +1.5 890,245 - -1.9 890,293 + -1.4 890,293 + +0.7 891,456 + Psyr_0785 0.34 +0.0 891,956 + Psyr_0785 0.64 -1.3 891,956 + Psyr_0785 0.64 +1.1 891,957 - Psyr_0785 0.65 +0.2 892,015 + Psyr_0785 0.68 -0.1 892,167 + Psyr_0785 0.77 +0.6 892,219 + Psyr_0785 0.80 +0.7 892,220 - Psyr_0785 0.80 -0.1 892,236 + Psyr_0785 0.81 -0.7 892,236 + Psyr_0785 0.81 -0.0 892,236 + Psyr_0785 0.81 +1.3 892,236 + Psyr_0785 0.81 +0.7 892,237 - Psyr_0785 0.81 -0.3 892,530 + -0.9 892,530 + -0.3 892,549 + -0.7 892,549 + +0.5 892,550 - -1.8 892,550 - +1.1 892,550 - +0.1 892,550 - +0.0 892,631 + -1.0 892,631 + +0.8 892,631 + -0.4 892,632 - +0.2 892,632 - +0.7 892,632 - -0.5 892,632 - +2.2 892,873 - Psyr_0786 0.14 -1.7 892,986 + Psyr_0786 0.19 +0.6 892,986 + Psyr_0786 0.19 -1.4 892,986 + Psyr_0786 0.19 +0.2 892,986 + Psyr_0786 0.19 +0.2 892,986 + Psyr_0786 0.19 +0.5 892,987 - Psyr_0786 0.19 +0.1 892,987 - Psyr_0786 0.19 -0.4 892,987 - Psyr_0786 0.19 +0.2 892,987 - Psyr_0786 0.19 +0.2 892,987 - Psyr_0786 0.19 -0.4 892,987 - Psyr_0786 0.19 +1.2 893,110 + Psyr_0786 0.25 +0.5 893,110 + Psyr_0786 0.25 +0.1 893,111 - Psyr_0786 0.25 -0.1 893,111 - Psyr_0786 0.25 -0.7 893,206 - Psyr_0786 0.30 +0.6
Or see this region's nucleotide sequence