Experiment: propionate carbon 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_03970 and PFR28_03971 are separated by 98 nucleotides PFR28_03971 and PFR28_03972 are separated by 79 nucleotides PFR28_03972 and PFR28_03973 are separated by 9 nucleotides
PFR28_03970: PFR28_03970 - HTH-type transcriptional activator RhaS, at 4,554,472 to 4,555,467
_03970
PFR28_03971: PFR28_03971 - Peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB, at 4,555,566 to 4,556,120
_03971
PFR28_03972: PFR28_03972 - Single-stranded DNA-binding protein, at 4,556,200 to 4,556,712
_03972
PFR28_03973: PFR28_03973 - Inner membrane transport protein YajR, at 4,556,722 to 4,558,119
_03973
Position (kb) 4555
4556
4557 Strain fitness (log2 ratio) -2
-1
0
1 at 4554.581 kb on + strand, within PFR28_03970 at 4554.668 kb on + strand, within PFR28_03970 at 4554.871 kb on - strand, within PFR28_03970 at 4554.871 kb on - strand, within PFR28_03970 at 4554.871 kb on - strand, within PFR28_03970 at 4554.979 kb on - strand, within PFR28_03970 at 4554.979 kb on - strand, within PFR28_03970 at 4554.979 kb on - strand, within PFR28_03970 at 4555.141 kb on + strand, within PFR28_03970 at 4555.142 kb on - strand, within PFR28_03970 at 4555.424 kb on + strand at 4555.424 kb on + strand at 4555.424 kb on + strand at 4555.486 kb on + strand at 4555.486 kb on + strand at 4555.487 kb on - strand at 4555.487 kb on - strand at 4555.487 kb on - strand at 4555.487 kb on - strand at 4555.589 kb on - strand at 4555.712 kb on + strand, within PFR28_03971 at 4555.712 kb on + strand, within PFR28_03971 at 4555.712 kb on + strand, within PFR28_03971 at 4555.713 kb on - strand, within PFR28_03971 at 4555.713 kb on - strand, within PFR28_03971 at 4555.713 kb on - strand, within PFR28_03971 at 4555.827 kb on + strand, within PFR28_03971 at 4555.827 kb on + strand, within PFR28_03971 at 4555.827 kb on + strand, within PFR28_03971 at 4555.827 kb on + strand, within PFR28_03971 at 4555.827 kb on + strand, within PFR28_03971 at 4555.827 kb on + strand, within PFR28_03971 at 4555.827 kb on + strand, within PFR28_03971 at 4555.827 kb on + strand, within PFR28_03971 at 4555.827 kb on + strand, within PFR28_03971 at 4555.827 kb on + strand, within PFR28_03971 at 4555.827 kb on + strand, within PFR28_03971 at 4555.827 kb on + strand, within PFR28_03971 at 4555.827 kb on + strand, within PFR28_03971 at 4555.828 kb on - strand, within PFR28_03971 at 4555.828 kb on - strand, within PFR28_03971 at 4555.828 kb on - strand, within PFR28_03971 at 4555.828 kb on - strand, within PFR28_03971 at 4555.828 kb on - strand, within PFR28_03971 at 4555.828 kb on - strand, within PFR28_03971 at 4555.828 kb on - strand, within PFR28_03971 at 4555.828 kb on - strand, within PFR28_03971 at 4555.828 kb on - strand, within PFR28_03971 at 4555.828 kb on - strand, within PFR28_03971 at 4555.828 kb on - strand, within PFR28_03971 at 4555.828 kb on - strand, within PFR28_03971 at 4555.828 kb on - strand, within PFR28_03971 at 4555.828 kb on - strand, within PFR28_03971 at 4555.828 kb on - strand, within PFR28_03971 at 4555.828 kb on - strand, within PFR28_03971 at 4555.828 kb on - strand, within PFR28_03971 at 4555.828 kb on - strand, within PFR28_03971 at 4555.916 kb on + strand, within PFR28_03971 at 4555.916 kb on + strand, within PFR28_03971 at 4555.916 kb on + strand, within PFR28_03971 at 4555.916 kb on + strand, within PFR28_03971 at 4555.916 kb on + strand, within PFR28_03971 at 4555.916 kb on + strand, within PFR28_03971 at 4555.916 kb on + strand, within PFR28_03971 at 4555.916 kb on + strand, within PFR28_03971 at 4555.916 kb on + strand, within PFR28_03971 at 4555.916 kb on + strand, within PFR28_03971 at 4555.916 kb on + strand, within PFR28_03971 at 4555.917 kb on - strand, within PFR28_03971 at 4555.917 kb on - strand, within PFR28_03971 at 4555.917 kb on - strand, within PFR28_03971 at 4555.917 kb on - strand, within PFR28_03971 at 4555.917 kb on - strand, within PFR28_03971 at 4555.917 kb on - strand, within PFR28_03971 at 4555.917 kb on - strand, within PFR28_03971 at 4555.917 kb on - strand, within PFR28_03971 at 4555.917 kb on - strand, within PFR28_03971 at 4555.917 kb on - strand, within PFR28_03971 at 4555.917 kb on - strand, within PFR28_03971 at 4555.917 kb on - strand, within PFR28_03971 at 4555.917 kb on - strand, within PFR28_03971 at 4555.960 kb on - strand, within PFR28_03971 at 4556.090 kb on + strand at 4556.104 kb on + strand at 4556.201 kb on + strand at 4556.201 kb on + strand at 4556.201 kb on + strand at 4556.201 kb on + strand at 4556.202 kb on - strand at 4556.202 kb on - strand at 4556.202 kb on - strand at 4556.806 kb on - strand at 4556.808 kb on - strand at 4556.808 kb on - strand at 4556.808 kb on - strand at 4556.808 kb on - strand at 4556.808 kb on - strand at 4556.931 kb on - strand, within PFR28_03973 at 4556.931 kb on - strand, within PFR28_03973 at 4556.931 kb on - strand, within PFR28_03973 at 4556.931 kb on - strand, within PFR28_03973 at 4556.931 kb on - strand, within PFR28_03973 at 4556.931 kb on - strand, within PFR28_03973 at 4556.931 kb on - strand, within PFR28_03973 at 4556.931 kb on - strand, within PFR28_03973 at 4556.931 kb on - strand, within PFR28_03973 at 4556.931 kb on - strand, within PFR28_03973 at 4556.950 kb on - strand, within PFR28_03973 at 4556.998 kb on + strand, within PFR28_03973 at 4556.998 kb on + strand, within PFR28_03973 at 4556.998 kb on + strand, within PFR28_03973 at 4556.998 kb on + strand, within PFR28_03973 at 4556.999 kb on - strand, within PFR28_03973 at 4556.999 kb on - strand, within PFR28_03973 at 4556.999 kb on - strand, within PFR28_03973 at 4556.999 kb on - strand, within PFR28_03973 at 4556.999 kb on - strand, within PFR28_03973 at 4556.999 kb on - strand, within PFR28_03973 at 4557.080 kb on + strand, within PFR28_03973
Per-strain Table
Position Strand Gene LocusTag Fraction propionate carbon 20 mM remove 4,554,581 + PFR28_03970 0.11 -0.6 4,554,668 + PFR28_03970 0.20 +1.3 4,554,871 - PFR28_03970 0.40 +0.0 4,554,871 - PFR28_03970 0.40 -0.1 4,554,871 - PFR28_03970 0.40 -0.8 4,554,979 - PFR28_03970 0.51 +0.5 4,554,979 - PFR28_03970 0.51 -0.1 4,554,979 - PFR28_03970 0.51 +0.1 4,555,141 + PFR28_03970 0.67 -0.2 4,555,142 - PFR28_03970 0.67 -0.5 4,555,424 + -0.8 4,555,424 + +0.1 4,555,424 + -0.4 4,555,486 + -1.9 4,555,486 + -1.0 4,555,487 - +0.9 4,555,487 - -0.7 4,555,487 - +1.3 4,555,487 - +1.0 4,555,589 - +0.2 4,555,712 + PFR28_03971 0.26 -0.8 4,555,712 + PFR28_03971 0.26 -0.6 4,555,712 + PFR28_03971 0.26 +0.8 4,555,713 - PFR28_03971 0.26 +0.8 4,555,713 - PFR28_03971 0.26 +1.0 4,555,713 - PFR28_03971 0.26 -2.0 4,555,827 + PFR28_03971 0.47 -0.8 4,555,827 + PFR28_03971 0.47 -0.2 4,555,827 + PFR28_03971 0.47 +0.2 4,555,827 + PFR28_03971 0.47 +0.6 4,555,827 + PFR28_03971 0.47 +0.1 4,555,827 + PFR28_03971 0.47 -1.6 4,555,827 + PFR28_03971 0.47 -1.8 4,555,827 + PFR28_03971 0.47 +0.6 4,555,827 + PFR28_03971 0.47 +0.2 4,555,827 + PFR28_03971 0.47 -0.1 4,555,827 + PFR28_03971 0.47 +1.2 4,555,827 + PFR28_03971 0.47 +1.3 4,555,827 + PFR28_03971 0.47 -0.1 4,555,828 - PFR28_03971 0.47 -0.5 4,555,828 - PFR28_03971 0.47 +0.5 4,555,828 - PFR28_03971 0.47 -0.0 4,555,828 - PFR28_03971 0.47 -0.6 4,555,828 - PFR28_03971 0.47 -0.7 4,555,828 - PFR28_03971 0.47 +1.6 4,555,828 - PFR28_03971 0.47 -0.4 4,555,828 - PFR28_03971 0.47 -0.3 4,555,828 - PFR28_03971 0.47 -0.1 4,555,828 - PFR28_03971 0.47 -0.5 4,555,828 - PFR28_03971 0.47 +0.6 4,555,828 - PFR28_03971 0.47 -0.3 4,555,828 - PFR28_03971 0.47 -0.4 4,555,828 - PFR28_03971 0.47 +0.3 4,555,828 - PFR28_03971 0.47 +0.7 4,555,828 - PFR28_03971 0.47 +0.3 4,555,828 - PFR28_03971 0.47 -0.5 4,555,828 - PFR28_03971 0.47 +0.2 4,555,916 + PFR28_03971 0.63 -0.4 4,555,916 + PFR28_03971 0.63 -0.8 4,555,916 + PFR28_03971 0.63 -0.1 4,555,916 + PFR28_03971 0.63 +0.9 4,555,916 + PFR28_03971 0.63 +0.6 4,555,916 + PFR28_03971 0.63 -0.1 4,555,916 + PFR28_03971 0.63 +1.1 4,555,916 + PFR28_03971 0.63 -1.4 4,555,916 + PFR28_03971 0.63 -0.5 4,555,916 + PFR28_03971 0.63 +0.7 4,555,916 + PFR28_03971 0.63 -2.2 4,555,917 - PFR28_03971 0.63 -1.1 4,555,917 - PFR28_03971 0.63 -0.3 4,555,917 - PFR28_03971 0.63 -0.2 4,555,917 - PFR28_03971 0.63 -0.8 4,555,917 - PFR28_03971 0.63 +0.3 4,555,917 - PFR28_03971 0.63 +0.5 4,555,917 - PFR28_03971 0.63 -1.8 4,555,917 - PFR28_03971 0.63 +0.4 4,555,917 - PFR28_03971 0.63 -2.0 4,555,917 - PFR28_03971 0.63 -0.5 4,555,917 - PFR28_03971 0.63 -0.5 4,555,917 - PFR28_03971 0.63 -1.0 4,555,917 - PFR28_03971 0.63 +1.1 4,555,960 - PFR28_03971 0.71 -0.8 4,556,090 + +0.5 4,556,104 + -0.3 4,556,201 + -0.5 4,556,201 + +0.1 4,556,201 + -1.3 4,556,201 + +1.2 4,556,202 - -0.1 4,556,202 - -0.6 4,556,202 - +0.1 4,556,806 - +0.3 4,556,808 - -0.3 4,556,808 - -0.4 4,556,808 - -0.4 4,556,808 - -0.0 4,556,808 - -0.4 4,556,931 - PFR28_03973 0.15 -0.2 4,556,931 - PFR28_03973 0.15 -1.8 4,556,931 - PFR28_03973 0.15 -0.1 4,556,931 - PFR28_03973 0.15 -0.2 4,556,931 - PFR28_03973 0.15 -0.1 4,556,931 - PFR28_03973 0.15 -1.1 4,556,931 - PFR28_03973 0.15 +0.8 4,556,931 - PFR28_03973 0.15 +0.1 4,556,931 - PFR28_03973 0.15 +0.2 4,556,931 - PFR28_03973 0.15 +0.1 4,556,950 - PFR28_03973 0.16 -1.2 4,556,998 + PFR28_03973 0.20 -1.2 4,556,998 + PFR28_03973 0.20 -0.9 4,556,998 + PFR28_03973 0.20 -1.4 4,556,998 + PFR28_03973 0.20 -2.3 4,556,999 - PFR28_03973 0.20 -1.0 4,556,999 - PFR28_03973 0.20 +1.0 4,556,999 - PFR28_03973 0.20 +1.6 4,556,999 - PFR28_03973 0.20 -1.2 4,556,999 - PFR28_03973 0.20 -1.4 4,556,999 - PFR28_03973 0.20 -1.2 4,557,080 + PFR28_03973 0.26 -2.4
Or see this region's nucleotide sequence