Strain Fitness in Pseudomonas sp. RS175 around PFR28_03222

Experiment: propionate carbon 20 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	propionate carbon 20 mM
3,727,986	+				+0.2
3,727,986	+				+0.2
3,727,986	+				-0.3
3,727,987	-				+0.0
3,727,987	-				-0.3
3,727,987	-				+0.3
3,728,009	-				+0.9
3,728,009	-				+0.2
3,728,009	-				-1.1
3,728,009	-				-1.4
3,728,011	-				+0.3
3,728,078	+				+0.8
3,728,078	+				+0.2
3,728,078	+				-0.1
3,728,079	-				-2.0
3,728,196	+		PFR28_03220	0.67	+0.4
3,728,196	+		PFR28_03220	0.67	+0.0
3,728,196	+		PFR28_03220	0.67	+0.7
3,728,197	-		PFR28_03220	0.68	+0.9
3,728,197	-		PFR28_03220	0.68	+0.9
3,728,197	-		PFR28_03220	0.68	+0.6
3,728,197	-		PFR28_03220	0.68	+0.7
3,728,197	-		PFR28_03220	0.68	-1.5
3,728,197	-		PFR28_03220	0.68	+0.5
3,728,197	-		PFR28_03220	0.68	+0.3
3,728,200	+		PFR28_03220	0.69	-0.0
3,728,200	+		PFR28_03220	0.69	+0.3
3,728,200	+		PFR28_03220	0.69	-0.6
3,728,200	+		PFR28_03220	0.69	-3.0
3,728,200	+		PFR28_03220	0.69	+2.0
3,728,200	+		PFR28_03220	0.69	-0.3
3,728,200	+		PFR28_03220	0.69	+0.2
3,728,200	+		PFR28_03220	0.69	+0.4
3,728,200	+		PFR28_03220	0.69	-0.3
3,728,200	+		PFR28_03220	0.69	+0.3
3,728,200	+		PFR28_03220	0.69	+0.3
3,728,200	+		PFR28_03220	0.69	+0.3
3,728,201	-		PFR28_03220	0.70	+1.3
3,728,201	-		PFR28_03220	0.70	+0.3
3,728,201	-		PFR28_03220	0.70	-1.1
3,728,201	-		PFR28_03220	0.70	+0.5
3,728,201	-		PFR28_03220	0.70	-1.6
3,728,201	-		PFR28_03220	0.70	-0.8
3,728,201	-		PFR28_03220	0.70	+1.3
3,728,201	-		PFR28_03220	0.70	+0.9
3,728,201	-		PFR28_03220	0.70	+1.1
3,728,201	-		PFR28_03220	0.70	+0.5
3,728,201	-		PFR28_03220	0.70	+1.0
3,728,201	-		PFR28_03220	0.70	-2.5
3,728,201	-		PFR28_03220	0.70	+0.1
3,728,201	-		PFR28_03220	0.70	-0.3
3,728,201	-		PFR28_03220	0.70	+0.0
3,728,201	-		PFR28_03220	0.70	-0.1
3,728,336	+				-0.3
3,728,337	-				+0.7
3,728,427	-				+0.4
3,728,484	+		PFR28_03221	0.16	+1.3
3,728,484	+		PFR28_03221	0.16	+0.2
3,728,484	+		PFR28_03221	0.16	-0.4
3,728,485	-		PFR28_03221	0.16	-0.9
3,728,485	-		PFR28_03221	0.16	-0.2
3,728,485	-		PFR28_03221	0.16	-2.2
3,728,485	-		PFR28_03221	0.16	+0.1
3,728,589	+		PFR28_03221	0.35	+0.6
3,728,589	+		PFR28_03221	0.35	-0.5
3,728,613	+		PFR28_03221	0.40	-0.2
3,728,613	+		PFR28_03221	0.40	-0.7
3,728,613	+		PFR28_03221	0.40	-0.9
3,728,614	-		PFR28_03221	0.40	+1.3
3,728,614	-		PFR28_03221	0.40	+0.7
3,728,614	-		PFR28_03221	0.40	+0.0
3,728,614	-		PFR28_03221	0.40	+1.0
3,728,645	+		PFR28_03221	0.46	+0.5
3,728,645	+		PFR28_03221	0.46	-0.2
3,728,645	+		PFR28_03221	0.46	+0.3
3,728,645	+		PFR28_03221	0.46	-0.0
3,728,645	+		PFR28_03221	0.46	+0.2
3,728,646	-		PFR28_03221	0.46	-0.3
3,728,646	-		PFR28_03221	0.46	-1.1
3,728,646	-		PFR28_03221	0.46	-1.0
3,728,646	-		PFR28_03221	0.46	-0.1
3,728,646	-		PFR28_03221	0.46	-1.5
3,728,648	+		PFR28_03221	0.46	+0.2
3,728,648	+		PFR28_03221	0.46	-0.3
3,728,649	-		PFR28_03221	0.46	+1.4
3,728,649	-		PFR28_03221	0.46	-1.1
3,728,944	+				+0.5
3,728,944	+				-0.1
3,728,944	+				+0.7
3,728,945	-				-0.9
3,728,945	-				-1.5
3,728,952	+				-0.6
3,728,952	+				+0.2
3,728,952	+				-0.4
3,728,953	-				+0.7
3,728,953	-				-1.5
3,729,030	+				-0.9
3,729,030	+				-0.5
3,729,030	+				+2.7
3,729,030	+				-1.0
3,729,031	-				-0.8
3,729,465	+		PFR28_03222	0.60	+0.4
3,729,465	+		PFR28_03222	0.60	+1.7
3,729,466	-		PFR28_03222	0.60	+0.5
3,729,466	-		PFR28_03222	0.60	+0.5
3,729,466	-		PFR28_03222	0.60	+0.3
3,729,466	-		PFR28_03222	0.60	+0.1
3,729,482	-		PFR28_03222	0.62	-0.9
3,729,501	+		PFR28_03222	0.64	-0.9
3,729,502	-		PFR28_03222	0.65	+0.7
3,729,502	-		PFR28_03222	0.65	-0.5
3,729,502	-		PFR28_03222	0.65	-0.7
3,729,502	-		PFR28_03222	0.65	-0.4
3,729,502	-		PFR28_03222	0.65	+0.3
3,729,502	-		PFR28_03222	0.65	+0.3
3,729,592	+		PFR28_03222	0.75	-0.0
3,729,592	+		PFR28_03222	0.75	-1.0
3,729,592	+		PFR28_03222	0.75	-0.8
3,729,592	+		PFR28_03222	0.75	+1.3
3,729,592	+		PFR28_03222	0.75	-0.5
3,729,593	-		PFR28_03222	0.75	-0.2
3,729,593	-		PFR28_03222	0.75	+0.5
3,729,593	-		PFR28_03222	0.75	-0.1
3,729,593	-		PFR28_03222	0.75	-0.0
3,729,593	-		PFR28_03222	0.75	-1.6
3,729,593	-		PFR28_03222	0.75	+0.6
3,729,595	+		PFR28_03222	0.76	-0.1
3,729,595	+		PFR28_03222	0.76	-0.5
3,729,595	+		PFR28_03222	0.76	-0.3
3,729,595	+		PFR28_03222	0.76	+1.0
3,729,595	+		PFR28_03222	0.76	-1.0
3,729,595	+		PFR28_03222	0.76	+0.6
3,729,595	+		PFR28_03222	0.76	+0.7
3,729,595	+		PFR28_03222	0.76	+0.2
3,729,595	+		PFR28_03222	0.76	-0.5
3,729,595	+		PFR28_03222	0.76	+0.5
3,729,595	+		PFR28_03222	0.76	+0.9
3,729,595	+		PFR28_03222	0.76	+0.1
3,729,595	+		PFR28_03222	0.76	-0.1
3,729,596	-		PFR28_03222	0.76	-0.4
3,729,596	-		PFR28_03222	0.76	+0.2
3,729,596	-		PFR28_03222	0.76	+0.2
3,729,596	-		PFR28_03222	0.76	-1.7
3,729,596	-		PFR28_03222	0.76	+0.7
3,729,596	-		PFR28_03222	0.76	-0.0
3,729,596	-		PFR28_03222	0.76	-1.0
3,729,596	-		PFR28_03222	0.76	+0.2
3,729,676	+		PFR28_03222	0.85	-1.3
3,729,676	+		PFR28_03222	0.85	-0.3
3,729,677	-		PFR28_03222	0.85	-0.5
3,729,712	+		PFR28_03222	0.90	+1.2
3,729,712	+		PFR28_03222	0.90	-0.3
3,729,712	+		PFR28_03222	0.90	-1.5
3,729,713	-		PFR28_03222	0.90	+0.1
3,729,713	-		PFR28_03222	0.90	+0.8
3,729,743	-				+0.5
3,729,793	+				-1.6
3,729,793	+				+0.4
3,729,793	+				-0.6
3,729,793	+				+0.1
3,729,794	-				+0.9
3,729,794	-				-2.1
3,729,794	-				-0.1
3,729,794	-				+0.4
3,729,935	-				-1.9
3,729,935	-				-1.1
3,730,079	+				-2.6
3,730,079	+				-2.5
3,730,229	+		PFR28_03223	0.16	-1.8
3,730,229	+		PFR28_03223	0.16	-2.1
3,730,230	-		PFR28_03223	0.16	-1.6
3,730,230	-		PFR28_03223	0.16	-2.0
3,730,632	+		PFR28_03223	0.34	-3.3
3,730,632	+		PFR28_03223	0.34	-2.0
3,730,632	+		PFR28_03223	0.34	-3.2
3,730,633	-		PFR28_03223	0.34	-3.4
3,730,633	-		PFR28_03223	0.34	-3.3
3,730,633	-		PFR28_03223	0.34	-2.9
3,730,634	+		PFR28_03223	0.34	-2.6
3,730,634	+		PFR28_03223	0.34	-0.9
3,730,634	+		PFR28_03223	0.34	-3.9
3,730,634	+		PFR28_03223	0.34	-3.6
3,730,634	+		PFR28_03223	0.34	-3.3
3,730,635	-		PFR28_03223	0.34	-2.8
3,730,721	+		PFR28_03223	0.38	-1.8
3,730,722	-		PFR28_03223	0.38	-1.8
3,730,722	-		PFR28_03223	0.38	-2.5
3,730,722	-		PFR28_03223	0.38	-1.9
3,730,722	-		PFR28_03223	0.38	-1.6
3,730,732	+		PFR28_03223	0.39	-1.6
3,730,767	+		PFR28_03223	0.40	-1.1
3,730,767	+		PFR28_03223	0.40	-2.4
3,730,767	+		PFR28_03223	0.40	-4.0
3,730,767	+		PFR28_03223	0.40	-2.6
3,730,768	-		PFR28_03223	0.40	-2.8
3,730,768	-		PFR28_03223	0.40	-3.5
3,730,768	-		PFR28_03223	0.40	-2.8