Strain Fitness in Pseudomonas sp. S08-1 around OH686_23560

Experiment: octanoate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_23555 and OH686_23560 are separated by 143 nucleotidesOH686_23560 and OH686_23565 overlap by 4 nucleotides OH686_23555: OH686_23555 - hypothetical protein, at 4,774,462 to 4,775,553 _23555 OH686_23560: OH686_23560 - CDS, at 4,775,697 to 4,775,837 _23560 OH686_23565: OH686_23565 - hypothetical protein, at 4,775,834 to 4,777,033 _23565 Position (kb) 4775 4776Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4774.785 kb on - strand, within OH686_23555at 4774.871 kb on + strand, within OH686_23555at 4774.872 kb on - strand, within OH686_23555at 4774.878 kb on - strand, within OH686_23555at 4774.878 kb on - strand, within OH686_23555at 4774.878 kb on - strand, within OH686_23555at 4775.008 kb on + strand, within OH686_23555at 4775.009 kb on - strand, within OH686_23555at 4775.009 kb on - strand, within OH686_23555at 4775.009 kb on - strand, within OH686_23555at 4775.051 kb on + strand, within OH686_23555at 4775.051 kb on + strand, within OH686_23555at 4775.051 kb on + strand, within OH686_23555at 4775.051 kb on + strand, within OH686_23555at 4775.051 kb on + strand, within OH686_23555at 4775.052 kb on - strand, within OH686_23555at 4775.052 kb on - strand, within OH686_23555at 4775.052 kb on - strand, within OH686_23555at 4775.052 kb on - strand, within OH686_23555at 4775.052 kb on - strand, within OH686_23555at 4775.141 kb on + strand, within OH686_23555at 4775.141 kb on + strand, within OH686_23555at 4775.141 kb on + strand, within OH686_23555at 4775.142 kb on - strand, within OH686_23555at 4775.142 kb on - strand, within OH686_23555at 4775.142 kb on - strand, within OH686_23555at 4775.142 kb on - strand, within OH686_23555at 4775.400 kb on + strand, within OH686_23555at 4775.402 kb on + strand, within OH686_23555at 4775.402 kb on + strand, within OH686_23555at 4775.402 kb on + strand, within OH686_23555at 4775.402 kb on + strand, within OH686_23555at 4775.403 kb on - strand, within OH686_23555at 4775.403 kb on - strand, within OH686_23555at 4775.403 kb on - strand, within OH686_23555at 4775.446 kb on + strandat 4775.503 kb on + strandat 4775.541 kb on - strandat 4775.554 kb on - strandat 4775.567 kb on + strandat 4775.567 kb on + strandat 4775.590 kb on + strandat 4775.884 kb on - strandat 4775.884 kb on - strandat 4775.985 kb on + strand, within OH686_23565at 4775.986 kb on - strand, within OH686_23565at 4776.074 kb on + strand, within OH686_23565at 4776.074 kb on + strand, within OH686_23565at 4776.074 kb on + strand, within OH686_23565at 4776.074 kb on + strand, within OH686_23565at 4776.074 kb on + strand, within OH686_23565at 4776.075 kb on - strand, within OH686_23565at 4776.075 kb on - strand, within OH686_23565at 4776.075 kb on - strand, within OH686_23565at 4776.110 kb on - strand, within OH686_23565at 4776.138 kb on + strand, within OH686_23565at 4776.185 kb on - strand, within OH686_23565at 4776.185 kb on - strand, within OH686_23565at 4776.244 kb on + strand, within OH686_23565at 4776.245 kb on - strand, within OH686_23565at 4776.276 kb on + strand, within OH686_23565at 4776.276 kb on + strand, within OH686_23565at 4776.276 kb on + strand, within OH686_23565at 4776.276 kb on + strand, within OH686_23565at 4776.276 kb on + strand, within OH686_23565at 4776.276 kb on + strand, within OH686_23565at 4776.276 kb on + strand, within OH686_23565at 4776.276 kb on + strand, within OH686_23565at 4776.277 kb on - strand, within OH686_23565at 4776.277 kb on - strand, within OH686_23565at 4776.277 kb on - strand, within OH686_23565at 4776.277 kb on - strand, within OH686_23565at 4776.277 kb on - strand, within OH686_23565at 4776.277 kb on - strand, within OH686_23565at 4776.371 kb on + strand, within OH686_23565at 4776.371 kb on + strand, within OH686_23565at 4776.372 kb on - strand, within OH686_23565at 4776.372 kb on - strand, within OH686_23565at 4776.372 kb on - strand, within OH686_23565at 4776.434 kb on + strand, within OH686_23565at 4776.434 kb on + strand, within OH686_23565at 4776.434 kb on + strand, within OH686_23565at 4776.435 kb on - strand, within OH686_23565at 4776.435 kb on - strand, within OH686_23565at 4776.460 kb on + strand, within OH686_23565at 4776.460 kb on + strand, within OH686_23565at 4776.461 kb on - strand, within OH686_23565at 4776.461 kb on - strand, within OH686_23565at 4776.461 kb on - strand, within OH686_23565at 4776.490 kb on + strand, within OH686_23565at 4776.491 kb on - strand, within OH686_23565at 4776.494 kb on + strand, within OH686_23565at 4776.494 kb on + strand, within OH686_23565at 4776.495 kb on - strand, within OH686_23565at 4776.517 kb on - strand, within OH686_23565at 4776.536 kb on + strand, within OH686_23565at 4776.536 kb on + strand, within OH686_23565at 4776.537 kb on - strand, within OH686_23565at 4776.537 kb on - strand, within OH686_23565at 4776.537 kb on - strand, within OH686_23565at 4776.537 kb on - strand, within OH686_23565at 4776.537 kb on - strand, within OH686_23565at 4776.537 kb on - strand, within OH686_23565at 4776.537 kb on - strand, within OH686_23565at 4776.537 kb on - strand, within OH686_23565at 4776.537 kb on - strand, within OH686_23565at 4776.537 kb on - strand, within OH686_23565at 4776.537 kb on - strand, within OH686_23565at 4776.538 kb on + strand, within OH686_23565at 4776.569 kb on + strand, within OH686_23565at 4776.570 kb on - strand, within OH686_23565at 4776.667 kb on + strand, within OH686_23565at 4776.819 kb on + strand, within OH686_23565

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Per-strain Table

Position Strand Gene LocusTag Fraction octanoate (C)
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4,774,785 - OH686_23555 0.30 -1.6
4,774,871 + OH686_23555 0.37 +0.8
4,774,872 - OH686_23555 0.38 -2.1
4,774,878 - OH686_23555 0.38 -0.1
4,774,878 - OH686_23555 0.38 -1.0
4,774,878 - OH686_23555 0.38 -0.2
4,775,008 + OH686_23555 0.50 -0.3
4,775,009 - OH686_23555 0.50 +0.8
4,775,009 - OH686_23555 0.50 -1.0
4,775,009 - OH686_23555 0.50 -0.9
4,775,051 + OH686_23555 0.54 -1.2
4,775,051 + OH686_23555 0.54 -0.3
4,775,051 + OH686_23555 0.54 -1.2
4,775,051 + OH686_23555 0.54 +2.3
4,775,051 + OH686_23555 0.54 -1.3
4,775,052 - OH686_23555 0.54 +2.3
4,775,052 - OH686_23555 0.54 -1.2
4,775,052 - OH686_23555 0.54 +0.8
4,775,052 - OH686_23555 0.54 -0.0
4,775,052 - OH686_23555 0.54 +0.3
4,775,141 + OH686_23555 0.62 +0.9
4,775,141 + OH686_23555 0.62 -0.9
4,775,141 + OH686_23555 0.62 +0.1
4,775,142 - OH686_23555 0.62 -1.1
4,775,142 - OH686_23555 0.62 -2.1
4,775,142 - OH686_23555 0.62 +0.1
4,775,142 - OH686_23555 0.62 -2.0
4,775,400 + OH686_23555 0.86 +1.2
4,775,402 + OH686_23555 0.86 +1.9
4,775,402 + OH686_23555 0.86 -1.5
4,775,402 + OH686_23555 0.86 -0.8
4,775,402 + OH686_23555 0.86 +0.5
4,775,403 - OH686_23555 0.86 +1.8
4,775,403 - OH686_23555 0.86 +0.2
4,775,403 - OH686_23555 0.86 -0.1
4,775,446 + +1.1
4,775,503 + +1.4
4,775,541 - +0.2
4,775,554 - +1.1
4,775,567 + -2.3
4,775,567 + -2.1
4,775,590 + +2.0
4,775,884 - -0.2
4,775,884 - -2.5
4,775,985 + OH686_23565 0.13 -2.0
4,775,986 - OH686_23565 0.13 +1.0
4,776,074 + OH686_23565 0.20 +1.8
4,776,074 + OH686_23565 0.20 -0.1
4,776,074 + OH686_23565 0.20 -0.5
4,776,074 + OH686_23565 0.20 -0.6
4,776,074 + OH686_23565 0.20 +1.9
4,776,075 - OH686_23565 0.20 -0.4
4,776,075 - OH686_23565 0.20 +0.1
4,776,075 - OH686_23565 0.20 -1.2
4,776,110 - OH686_23565 0.23 -0.3
4,776,138 + OH686_23565 0.25 -0.7
4,776,185 - OH686_23565 0.29 -1.8
4,776,185 - OH686_23565 0.29 -0.7
4,776,244 + OH686_23565 0.34 -2.0
4,776,245 - OH686_23565 0.34 -0.9
4,776,276 + OH686_23565 0.37 -1.1
4,776,276 + OH686_23565 0.37 -2.7
4,776,276 + OH686_23565 0.37 +1.8
4,776,276 + OH686_23565 0.37 -0.8
4,776,276 + OH686_23565 0.37 -0.8
4,776,276 + OH686_23565 0.37 +0.8
4,776,276 + OH686_23565 0.37 -1.7
4,776,276 + OH686_23565 0.37 -0.9
4,776,277 - OH686_23565 0.37 -0.9
4,776,277 - OH686_23565 0.37 +1.0
4,776,277 - OH686_23565 0.37 +0.1
4,776,277 - OH686_23565 0.37 -2.2
4,776,277 - OH686_23565 0.37 +0.5
4,776,277 - OH686_23565 0.37 +2.1
4,776,371 + OH686_23565 0.45 -0.4
4,776,371 + OH686_23565 0.45 -0.4
4,776,372 - OH686_23565 0.45 +0.3
4,776,372 - OH686_23565 0.45 -2.5
4,776,372 - OH686_23565 0.45 -1.1
4,776,434 + OH686_23565 0.50 +1.0
4,776,434 + OH686_23565 0.50 +0.4
4,776,434 + OH686_23565 0.50 +0.5
4,776,435 - OH686_23565 0.50 +0.0
4,776,435 - OH686_23565 0.50 -0.5
4,776,460 + OH686_23565 0.52 -1.5
4,776,460 + OH686_23565 0.52 -0.6
4,776,461 - OH686_23565 0.52 -0.8
4,776,461 - OH686_23565 0.52 -0.2
4,776,461 - OH686_23565 0.52 +0.6
4,776,490 + OH686_23565 0.55 +0.9
4,776,491 - OH686_23565 0.55 +0.3
4,776,494 + OH686_23565 0.55 +0.4
4,776,494 + OH686_23565 0.55 -0.9
4,776,495 - OH686_23565 0.55 -1.7
4,776,517 - OH686_23565 0.57 -0.7
4,776,536 + OH686_23565 0.58 -1.3
4,776,536 + OH686_23565 0.58 +3.0
4,776,537 - OH686_23565 0.59 -1.2
4,776,537 - OH686_23565 0.59 +1.6
4,776,537 - OH686_23565 0.59 +0.1
4,776,537 - OH686_23565 0.59 +0.2
4,776,537 - OH686_23565 0.59 +0.8
4,776,537 - OH686_23565 0.59 +0.8
4,776,537 - OH686_23565 0.59 -0.4
4,776,537 - OH686_23565 0.59 -1.7
4,776,537 - OH686_23565 0.59 -0.3
4,776,537 - OH686_23565 0.59 +0.5
4,776,537 - OH686_23565 0.59 -0.8
4,776,538 + OH686_23565 0.59 -0.5
4,776,569 + OH686_23565 0.61 -0.3
4,776,570 - OH686_23565 0.61 -1.6
4,776,667 + OH686_23565 0.69 -1.7
4,776,819 + OH686_23565 0.82 -0.4

Or see this region's nucleotide sequence