Strain Fitness in Pseudomonas sp. S08-1 around OH686_23190

Experiment: octanoate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_23185 and OH686_23190 are separated by 122 nucleotidesOH686_23190 and OH686_23195 are separated by 16 nucleotidesOH686_23195 and OH686_23200 overlap by 29 nucleotidesOH686_23200 and OH686_23205 overlap by 99 nucleotides OH686_23185: OH686_23185 - DipZ protein, at 4,699,849 to 4,701,096 _23185 OH686_23190: OH686_23190 - hypothetical protein, at 4,701,219 to 4,701,437 _23190 OH686_23195: OH686_23195 - hypothetical protein, at 4,701,454 to 4,701,606 _23195 OH686_23200: OH686_23200 - hypothetical protein' product='hypothetical protein, at 4,701,578 to 4,701,913 _23200 OH686_23205: OH686_23205 - hypothetical protein, at 4,701,815 to 4,702,615 _23205 Position (kb) 4701 4702Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4700.321 kb on - strand, within OH686_23185at 4700.399 kb on + strand, within OH686_23185at 4700.716 kb on + strand, within OH686_23185at 4700.716 kb on + strand, within OH686_23185at 4700.716 kb on + strand, within OH686_23185at 4700.716 kb on + strand, within OH686_23185at 4700.716 kb on + strand, within OH686_23185at 4700.716 kb on + strand, within OH686_23185at 4700.716 kb on + strand, within OH686_23185at 4700.716 kb on + strand, within OH686_23185at 4700.716 kb on + strand, within OH686_23185at 4700.716 kb on + strand, within OH686_23185at 4700.717 kb on - strand, within OH686_23185at 4700.717 kb on - strand, within OH686_23185at 4700.717 kb on - strand, within OH686_23185at 4700.717 kb on - strand, within OH686_23185at 4700.749 kb on + strand, within OH686_23185at 4700.749 kb on + strand, within OH686_23185at 4700.749 kb on + strand, within OH686_23185at 4700.750 kb on - strand, within OH686_23185at 4700.750 kb on - strand, within OH686_23185at 4700.773 kb on + strand, within OH686_23185at 4700.819 kb on - strand, within OH686_23185at 4700.825 kb on - strand, within OH686_23185at 4700.932 kb on + strand, within OH686_23185at 4700.933 kb on - strand, within OH686_23185at 4700.947 kb on + strand, within OH686_23185at 4700.947 kb on + strand, within OH686_23185at 4700.947 kb on + strand, within OH686_23185at 4700.947 kb on + strand, within OH686_23185at 4700.947 kb on + strand, within OH686_23185at 4700.947 kb on + strand, within OH686_23185at 4700.947 kb on + strand, within OH686_23185at 4700.947 kb on + strand, within OH686_23185at 4700.948 kb on - strand, within OH686_23185at 4700.948 kb on - strand, within OH686_23185at 4700.948 kb on - strand, within OH686_23185at 4700.948 kb on - strand, within OH686_23185at 4701.146 kb on + strandat 4701.146 kb on + strandat 4701.146 kb on + strandat 4701.146 kb on + strandat 4701.146 kb on + strandat 4701.147 kb on - strandat 4701.147 kb on - strandat 4701.147 kb on - strandat 4701.147 kb on - strandat 4701.147 kb on - strandat 4701.147 kb on - strandat 4701.147 kb on - strandat 4701.310 kb on - strand, within OH686_23190at 4701.579 kb on + strandat 4701.580 kb on - strandat 4701.580 kb on - strandat 4701.623 kb on - strand, within OH686_23200at 4701.672 kb on + strand, within OH686_23200at 4701.672 kb on + strand, within OH686_23200at 4701.672 kb on + strand, within OH686_23200at 4701.672 kb on + strand, within OH686_23200at 4701.673 kb on - strand, within OH686_23200at 4701.673 kb on - strand, within OH686_23200at 4701.774 kb on + strand, within OH686_23200at 4701.774 kb on + strand, within OH686_23200at 4701.774 kb on + strand, within OH686_23200at 4701.774 kb on + strand, within OH686_23200at 4701.774 kb on + strand, within OH686_23200at 4701.774 kb on + strand, within OH686_23200at 4701.774 kb on + strand, within OH686_23200at 4701.774 kb on + strand, within OH686_23200at 4701.774 kb on + strand, within OH686_23200at 4701.774 kb on + strand, within OH686_23200at 4701.774 kb on + strand, within OH686_23200at 4701.775 kb on - strand, within OH686_23200at 4701.775 kb on - strand, within OH686_23200at 4701.775 kb on - strand, within OH686_23200at 4701.775 kb on - strand, within OH686_23200at 4701.775 kb on - strand, within OH686_23200at 4701.775 kb on - strand, within OH686_23200at 4701.775 kb on - strand, within OH686_23200at 4701.778 kb on + strand, within OH686_23200at 4701.778 kb on + strand, within OH686_23200at 4701.778 kb on + strand, within OH686_23200at 4701.779 kb on - strand, within OH686_23200at 4701.779 kb on - strand, within OH686_23200at 4701.779 kb on - strand, within OH686_23200at 4701.779 kb on - strand, within OH686_23200at 4701.779 kb on - strand, within OH686_23200at 4701.885 kb on - strandat 4701.885 kb on - strandat 4701.885 kb on - strandat 4701.950 kb on + strand, within OH686_23205at 4701.950 kb on + strand, within OH686_23205at 4701.950 kb on + strand, within OH686_23205at 4701.950 kb on + strand, within OH686_23205at 4701.951 kb on - strand, within OH686_23205at 4701.951 kb on - strand, within OH686_23205at 4701.951 kb on - strand, within OH686_23205at 4701.951 kb on - strand, within OH686_23205at 4701.959 kb on + strand, within OH686_23205at 4701.968 kb on + strand, within OH686_23205at 4701.968 kb on + strand, within OH686_23205at 4701.969 kb on - strand, within OH686_23205at 4701.969 kb on - strand, within OH686_23205at 4701.969 kb on - strand, within OH686_23205at 4701.969 kb on - strand, within OH686_23205at 4701.996 kb on + strand, within OH686_23205at 4701.996 kb on + strand, within OH686_23205at 4701.996 kb on + strand, within OH686_23205at 4701.996 kb on + strand, within OH686_23205at 4701.996 kb on + strand, within OH686_23205at 4701.996 kb on + strand, within OH686_23205at 4701.997 kb on - strand, within OH686_23205at 4701.997 kb on - strand, within OH686_23205at 4702.025 kb on + strand, within OH686_23205at 4702.025 kb on + strand, within OH686_23205at 4702.025 kb on + strand, within OH686_23205at 4702.026 kb on - strand, within OH686_23205at 4702.181 kb on + strand, within OH686_23205at 4702.181 kb on + strand, within OH686_23205at 4702.181 kb on + strand, within OH686_23205at 4702.181 kb on + strand, within OH686_23205at 4702.181 kb on + strand, within OH686_23205at 4702.181 kb on + strand, within OH686_23205at 4702.181 kb on + strand, within OH686_23205at 4702.181 kb on + strand, within OH686_23205at 4702.181 kb on + strand, within OH686_23205at 4702.182 kb on - strand, within OH686_23205at 4702.182 kb on - strand, within OH686_23205at 4702.182 kb on - strand, within OH686_23205at 4702.182 kb on - strand, within OH686_23205at 4702.366 kb on - strand, within OH686_23205

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Per-strain Table

Position Strand Gene LocusTag Fraction octanoate (C)
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4,700,321 - OH686_23185 0.38 -0.9
4,700,399 + OH686_23185 0.44 +0.8
4,700,716 + OH686_23185 0.69 -1.4
4,700,716 + OH686_23185 0.69 -1.4
4,700,716 + OH686_23185 0.69 +0.0
4,700,716 + OH686_23185 0.69 -1.0
4,700,716 + OH686_23185 0.69 +3.2
4,700,716 + OH686_23185 0.69 +0.4
4,700,716 + OH686_23185 0.69 +0.4
4,700,716 + OH686_23185 0.69 +0.3
4,700,716 + OH686_23185 0.69 +0.2
4,700,716 + OH686_23185 0.69 -0.8
4,700,717 - OH686_23185 0.70 -0.6
4,700,717 - OH686_23185 0.70 -1.7
4,700,717 - OH686_23185 0.70 -0.1
4,700,717 - OH686_23185 0.70 -0.0
4,700,749 + OH686_23185 0.72 -0.8
4,700,749 + OH686_23185 0.72 +0.7
4,700,749 + OH686_23185 0.72 +1.5
4,700,750 - OH686_23185 0.72 -1.2
4,700,750 - OH686_23185 0.72 +1.1
4,700,773 + OH686_23185 0.74 -1.3
4,700,819 - OH686_23185 0.78 -0.6
4,700,825 - OH686_23185 0.78 -1.1
4,700,932 + OH686_23185 0.87 +0.4
4,700,933 - OH686_23185 0.87 -0.3
4,700,947 + OH686_23185 0.88 +0.9
4,700,947 + OH686_23185 0.88 +0.8
4,700,947 + OH686_23185 0.88 -0.1
4,700,947 + OH686_23185 0.88 +0.1
4,700,947 + OH686_23185 0.88 -1.9
4,700,947 + OH686_23185 0.88 -0.9
4,700,947 + OH686_23185 0.88 -0.3
4,700,947 + OH686_23185 0.88 -2.4
4,700,948 - OH686_23185 0.88 -1.4
4,700,948 - OH686_23185 0.88 -2.7
4,700,948 - OH686_23185 0.88 -0.5
4,700,948 - OH686_23185 0.88 -1.9
4,701,146 + -2.3
4,701,146 + +0.0
4,701,146 + +0.3
4,701,146 + +0.6
4,701,146 + -0.1
4,701,147 - -1.8
4,701,147 - +0.6
4,701,147 - -0.0
4,701,147 - +1.1
4,701,147 - -1.3
4,701,147 - +1.6
4,701,147 - -0.5
4,701,310 - OH686_23190 0.42 -0.2
4,701,579 + -2.9
4,701,580 - +1.6
4,701,580 - +1.6
4,701,623 - OH686_23200 0.13 -2.0
4,701,672 + OH686_23200 0.28 +2.0
4,701,672 + OH686_23200 0.28 -0.1
4,701,672 + OH686_23200 0.28 -1.5
4,701,672 + OH686_23200 0.28 +0.3
4,701,673 - OH686_23200 0.28 -1.1
4,701,673 - OH686_23200 0.28 -0.6
4,701,774 + OH686_23200 0.58 +0.1
4,701,774 + OH686_23200 0.58 +2.3
4,701,774 + OH686_23200 0.58 +0.3
4,701,774 + OH686_23200 0.58 -2.3
4,701,774 + OH686_23200 0.58 -2.4
4,701,774 + OH686_23200 0.58 +2.4
4,701,774 + OH686_23200 0.58 -1.2
4,701,774 + OH686_23200 0.58 +0.4
4,701,774 + OH686_23200 0.58 -0.2
4,701,774 + OH686_23200 0.58 -0.5
4,701,774 + OH686_23200 0.58 +1.6
4,701,775 - OH686_23200 0.59 -0.6
4,701,775 - OH686_23200 0.59 -1.7
4,701,775 - OH686_23200 0.59 -0.2
4,701,775 - OH686_23200 0.59 -2.3
4,701,775 - OH686_23200 0.59 -1.0
4,701,775 - OH686_23200 0.59 +1.0
4,701,775 - OH686_23200 0.59 +0.5
4,701,778 + OH686_23200 0.60 -0.8
4,701,778 + OH686_23200 0.60 +0.6
4,701,778 + OH686_23200 0.60 -0.3
4,701,779 - OH686_23200 0.60 -3.0
4,701,779 - OH686_23200 0.60 -1.1
4,701,779 - OH686_23200 0.60 +1.6
4,701,779 - OH686_23200 0.60 +1.1
4,701,779 - OH686_23200 0.60 -0.0
4,701,885 - -0.6
4,701,885 - -0.9
4,701,885 - +0.7
4,701,950 + OH686_23205 0.17 +1.8
4,701,950 + OH686_23205 0.17 -1.7
4,701,950 + OH686_23205 0.17 -1.9
4,701,950 + OH686_23205 0.17 +0.7
4,701,951 - OH686_23205 0.17 -1.2
4,701,951 - OH686_23205 0.17 +1.1
4,701,951 - OH686_23205 0.17 +0.6
4,701,951 - OH686_23205 0.17 +1.6
4,701,959 + OH686_23205 0.18 -1.3
4,701,968 + OH686_23205 0.19 -1.2
4,701,968 + OH686_23205 0.19 -1.9
4,701,969 - OH686_23205 0.19 -0.9
4,701,969 - OH686_23205 0.19 +0.9
4,701,969 - OH686_23205 0.19 +1.1
4,701,969 - OH686_23205 0.19 -0.6
4,701,996 + OH686_23205 0.23 +1.2
4,701,996 + OH686_23205 0.23 -1.0
4,701,996 + OH686_23205 0.23 +0.2
4,701,996 + OH686_23205 0.23 +1.0
4,701,996 + OH686_23205 0.23 +0.1
4,701,996 + OH686_23205 0.23 -0.4
4,701,997 - OH686_23205 0.23 +0.4
4,701,997 - OH686_23205 0.23 -2.0
4,702,025 + OH686_23205 0.26 -2.9
4,702,025 + OH686_23205 0.26 +1.5
4,702,025 + OH686_23205 0.26 -0.1
4,702,026 - OH686_23205 0.26 -1.6
4,702,181 + OH686_23205 0.46 -1.9
4,702,181 + OH686_23205 0.46 -1.4
4,702,181 + OH686_23205 0.46 +1.0
4,702,181 + OH686_23205 0.46 -0.5
4,702,181 + OH686_23205 0.46 +0.8
4,702,181 + OH686_23205 0.46 -2.2
4,702,181 + OH686_23205 0.46 +1.3
4,702,181 + OH686_23205 0.46 +0.1
4,702,181 + OH686_23205 0.46 +0.4
4,702,182 - OH686_23205 0.46 -1.3
4,702,182 - OH686_23205 0.46 +1.5
4,702,182 - OH686_23205 0.46 -1.4
4,702,182 - OH686_23205 0.46 -0.3
4,702,366 - OH686_23205 0.69 +1.5

Or see this region's nucleotide sequence