Strain Fitness in Pseudomonas sp. S08-1 around OH686_22485

Experiment: octanoate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_22475 and OH686_22480 are separated by 49 nucleotidesOH686_22480 and OH686_22485 overlap by 116 nucleotidesOH686_22485 and OH686_22490 overlap by 4 nucleotidesOH686_22490 and OH686_22495 are separated by 143 nucleotides OH686_22475: OH686_22475 - hypothetical protein, at 4,566,809 to 4,567,207 _22475 OH686_22480: OH686_22480 - Putative metalloprotease yggG , at 4,567,257 to 4,568,009 _22480 OH686_22485: OH686_22485 - hypothetical protein' product='hypothetical protein, at 4,567,894 to 4,568,139 _22485 OH686_22490: OH686_22490 - hypothetical protein, at 4,568,136 to 4,568,480 _22490 OH686_22495: OH686_22495 - 3-deoxy-7-phosphoheptulonate synthase, at 4,568,624 to 4,569,967 _22495 Position (kb) 4567 4568 4569Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4567.005 kb on + strand, within OH686_22475at 4567.005 kb on + strand, within OH686_22475at 4567.006 kb on - strand, within OH686_22475at 4567.006 kb on - strand, within OH686_22475at 4567.006 kb on - strand, within OH686_22475at 4567.006 kb on - strand, within OH686_22475at 4567.017 kb on + strand, within OH686_22475at 4567.017 kb on + strand, within OH686_22475at 4567.018 kb on - strand, within OH686_22475at 4567.018 kb on - strand, within OH686_22475at 4567.044 kb on - strand, within OH686_22475at 4567.119 kb on + strand, within OH686_22475at 4567.119 kb on + strand, within OH686_22475at 4567.119 kb on + strand, within OH686_22475at 4567.157 kb on + strand, within OH686_22475at 4567.157 kb on + strand, within OH686_22475at 4567.212 kb on + strandat 4567.212 kb on + strandat 4567.212 kb on + strandat 4567.212 kb on + strandat 4567.212 kb on + strandat 4567.212 kb on + strandat 4567.212 kb on + strandat 4567.212 kb on + strandat 4567.212 kb on + strandat 4567.213 kb on - strandat 4567.213 kb on - strandat 4567.213 kb on - strandat 4567.213 kb on - strandat 4567.213 kb on - strandat 4567.213 kb on - strandat 4567.213 kb on - strandat 4567.258 kb on + strandat 4567.258 kb on + strandat 4567.258 kb on + strandat 4567.258 kb on + strandat 4567.258 kb on + strandat 4567.258 kb on + strandat 4567.259 kb on - strandat 4567.259 kb on - strandat 4567.259 kb on - strandat 4567.259 kb on - strandat 4567.259 kb on - strandat 4567.259 kb on - strandat 4567.259 kb on - strandat 4567.259 kb on - strandat 4567.259 kb on - strandat 4567.259 kb on - strandat 4567.259 kb on - strandat 4567.287 kb on - strandat 4567.567 kb on + strand, within OH686_22480at 4567.567 kb on + strand, within OH686_22480at 4567.567 kb on + strand, within OH686_22480at 4567.568 kb on - strand, within OH686_22480at 4567.675 kb on + strand, within OH686_22480at 4567.675 kb on + strand, within OH686_22480at 4567.675 kb on + strand, within OH686_22480at 4567.676 kb on - strand, within OH686_22480at 4567.676 kb on - strand, within OH686_22480at 4567.676 kb on - strand, within OH686_22480at 4567.676 kb on - strand, within OH686_22480at 4567.729 kb on + strand, within OH686_22480at 4567.730 kb on - strand, within OH686_22480at 4567.730 kb on - strand, within OH686_22480at 4567.730 kb on - strand, within OH686_22480at 4567.730 kb on - strand, within OH686_22480at 4567.730 kb on - strand, within OH686_22480at 4567.738 kb on + strand, within OH686_22480at 4567.738 kb on + strand, within OH686_22480at 4567.738 kb on + strand, within OH686_22480at 4567.738 kb on + strand, within OH686_22480at 4567.738 kb on + strand, within OH686_22480at 4567.739 kb on - strand, within OH686_22480at 4567.739 kb on - strand, within OH686_22480at 4567.739 kb on - strand, within OH686_22480at 4567.739 kb on - strand, within OH686_22480at 4567.739 kb on - strand, within OH686_22480at 4567.739 kb on - strand, within OH686_22480at 4567.739 kb on - strand, within OH686_22480at 4567.739 kb on - strand, within OH686_22480at 4567.739 kb on - strand, within OH686_22480at 4567.739 kb on - strand, within OH686_22480at 4567.739 kb on - strand, within OH686_22480at 4567.739 kb on - strand, within OH686_22480at 4567.804 kb on + strand, within OH686_22480at 4567.804 kb on + strand, within OH686_22480at 4567.804 kb on + strand, within OH686_22480at 4567.805 kb on - strand, within OH686_22480at 4568.257 kb on + strand, within OH686_22490at 4568.257 kb on + strand, within OH686_22490at 4568.257 kb on + strand, within OH686_22490at 4568.257 kb on + strand, within OH686_22490at 4568.258 kb on - strand, within OH686_22490at 4568.258 kb on - strand, within OH686_22490at 4568.258 kb on - strand, within OH686_22490at 4568.258 kb on - strand, within OH686_22490at 4568.258 kb on - strand, within OH686_22490at 4568.283 kb on + strand, within OH686_22490at 4568.284 kb on - strand, within OH686_22490at 4568.284 kb on - strand, within OH686_22490at 4568.284 kb on - strand, within OH686_22490at 4568.362 kb on + strand, within OH686_22490at 4568.362 kb on + strand, within OH686_22490at 4568.362 kb on + strand, within OH686_22490at 4568.362 kb on + strand, within OH686_22490at 4568.363 kb on - strand, within OH686_22490at 4568.363 kb on - strand, within OH686_22490at 4568.363 kb on - strand, within OH686_22490at 4568.363 kb on - strand, within OH686_22490at 4568.401 kb on + strand, within OH686_22490at 4568.401 kb on + strand, within OH686_22490at 4568.401 kb on + strand, within OH686_22490at 4568.402 kb on - strand, within OH686_22490at 4568.402 kb on - strand, within OH686_22490at 4568.402 kb on - strand, within OH686_22490at 4568.402 kb on - strand, within OH686_22490at 4568.402 kb on - strand, within OH686_22490at 4568.469 kb on + strandat 4568.469 kb on + strandat 4568.469 kb on + strandat 4568.470 kb on - strandat 4568.470 kb on - strandat 4568.470 kb on - strandat 4568.470 kb on - strandat 4568.470 kb on - strandat 4568.710 kb on + strandat 4568.711 kb on - strandat 4568.711 kb on - strandat 4568.794 kb on + strand, within OH686_22495at 4568.794 kb on + strand, within OH686_22495at 4568.794 kb on + strand, within OH686_22495at 4568.886 kb on + strand, within OH686_22495

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Per-strain Table

Position Strand Gene LocusTag Fraction octanoate (C)
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4,567,005 + OH686_22475 0.49 -0.4
4,567,005 + OH686_22475 0.49 +1.0
4,567,006 - OH686_22475 0.49 +0.6
4,567,006 - OH686_22475 0.49 +0.7
4,567,006 - OH686_22475 0.49 -1.8
4,567,006 - OH686_22475 0.49 -0.2
4,567,017 + OH686_22475 0.52 +0.3
4,567,017 + OH686_22475 0.52 -2.3
4,567,018 - OH686_22475 0.52 +0.4
4,567,018 - OH686_22475 0.52 +0.5
4,567,044 - OH686_22475 0.59 -1.5
4,567,119 + OH686_22475 0.78 +1.7
4,567,119 + OH686_22475 0.78 -1.2
4,567,119 + OH686_22475 0.78 -0.6
4,567,157 + OH686_22475 0.87 +0.1
4,567,157 + OH686_22475 0.87 +0.9
4,567,212 + +0.5
4,567,212 + -2.3
4,567,212 + -0.6
4,567,212 + -1.3
4,567,212 + -0.7
4,567,212 + -2.1
4,567,212 + +0.9
4,567,212 + +1.5
4,567,212 + -1.4
4,567,213 - -2.1
4,567,213 - +0.9
4,567,213 - +0.3
4,567,213 - -1.5
4,567,213 - +2.0
4,567,213 - +0.3
4,567,213 - -0.7
4,567,258 + -0.3
4,567,258 + -2.9
4,567,258 + +1.5
4,567,258 + +2.7
4,567,258 + +0.9
4,567,258 + +1.5
4,567,259 - +0.9
4,567,259 - +1.4
4,567,259 - -0.5
4,567,259 - +0.9
4,567,259 - -1.9
4,567,259 - +0.4
4,567,259 - +0.5
4,567,259 - -0.1
4,567,259 - -0.9
4,567,259 - +0.2
4,567,259 - +0.7
4,567,287 - +0.2
4,567,567 + OH686_22480 0.41 +1.4
4,567,567 + OH686_22480 0.41 +0.3
4,567,567 + OH686_22480 0.41 -1.2
4,567,568 - OH686_22480 0.41 -2.6
4,567,675 + OH686_22480 0.56 -0.6
4,567,675 + OH686_22480 0.56 -2.0
4,567,675 + OH686_22480 0.56 +1.5
4,567,676 - OH686_22480 0.56 -1.1
4,567,676 - OH686_22480 0.56 +0.1
4,567,676 - OH686_22480 0.56 -0.9
4,567,676 - OH686_22480 0.56 +1.4
4,567,729 + OH686_22480 0.63 -0.8
4,567,730 - OH686_22480 0.63 -1.4
4,567,730 - OH686_22480 0.63 -0.2
4,567,730 - OH686_22480 0.63 +2.3
4,567,730 - OH686_22480 0.63 -0.4
4,567,730 - OH686_22480 0.63 +0.4
4,567,738 + OH686_22480 0.64 -2.0
4,567,738 + OH686_22480 0.64 -0.4
4,567,738 + OH686_22480 0.64 -1.1
4,567,738 + OH686_22480 0.64 +1.1
4,567,738 + OH686_22480 0.64 -0.6
4,567,739 - OH686_22480 0.64 -1.2
4,567,739 - OH686_22480 0.64 -1.1
4,567,739 - OH686_22480 0.64 -0.5
4,567,739 - OH686_22480 0.64 -1.0
4,567,739 - OH686_22480 0.64 +2.1
4,567,739 - OH686_22480 0.64 -1.7
4,567,739 - OH686_22480 0.64 -1.1
4,567,739 - OH686_22480 0.64 +0.9
4,567,739 - OH686_22480 0.64 -0.5
4,567,739 - OH686_22480 0.64 -0.4
4,567,739 - OH686_22480 0.64 +0.4
4,567,739 - OH686_22480 0.64 -0.5
4,567,804 + OH686_22480 0.73 -0.4
4,567,804 + OH686_22480 0.73 -0.8
4,567,804 + OH686_22480 0.73 +0.0
4,567,805 - OH686_22480 0.73 +0.5
4,568,257 + OH686_22490 0.35 -0.6
4,568,257 + OH686_22490 0.35 +1.1
4,568,257 + OH686_22490 0.35 +1.7
4,568,257 + OH686_22490 0.35 -0.6
4,568,258 - OH686_22490 0.35 -1.2
4,568,258 - OH686_22490 0.35 -1.1
4,568,258 - OH686_22490 0.35 -1.0
4,568,258 - OH686_22490 0.35 -2.2
4,568,258 - OH686_22490 0.35 -0.8
4,568,283 + OH686_22490 0.43 -1.5
4,568,284 - OH686_22490 0.43 +0.6
4,568,284 - OH686_22490 0.43 -1.0
4,568,284 - OH686_22490 0.43 +0.8
4,568,362 + OH686_22490 0.66 +1.2
4,568,362 + OH686_22490 0.66 -1.1
4,568,362 + OH686_22490 0.66 -1.0
4,568,362 + OH686_22490 0.66 -1.9
4,568,363 - OH686_22490 0.66 -0.8
4,568,363 - OH686_22490 0.66 +1.5
4,568,363 - OH686_22490 0.66 -0.7
4,568,363 - OH686_22490 0.66 -0.6
4,568,401 + OH686_22490 0.77 -1.6
4,568,401 + OH686_22490 0.77 +0.1
4,568,401 + OH686_22490 0.77 +0.5
4,568,402 - OH686_22490 0.77 -1.3
4,568,402 - OH686_22490 0.77 -2.1
4,568,402 - OH686_22490 0.77 -0.6
4,568,402 - OH686_22490 0.77 +0.9
4,568,402 - OH686_22490 0.77 -0.3
4,568,469 + -2.3
4,568,469 + -0.3
4,568,469 + -2.4
4,568,470 - -1.5
4,568,470 - -1.0
4,568,470 - +1.4
4,568,470 - -0.9
4,568,470 - +1.9
4,568,710 + -0.6
4,568,711 - +1.1
4,568,711 - -2.4
4,568,794 + OH686_22495 0.13 +1.5
4,568,794 + OH686_22495 0.13 -0.2
4,568,794 + OH686_22495 0.13 +1.2
4,568,886 + OH686_22495 0.19 +0.5

Or see this region's nucleotide sequence