Strain Fitness in Pseudomonas sp. S08-1 around OH686_20135

Experiment: octanoate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOH686_20125 and OH686_20130 are separated by 139 nucleotidesOH686_20130 and OH686_20135 are separated by 100 nucleotidesOH686_20135 and OH686_20140 are separated by 17 nucleotides OH686_20125: OH686_20125 - Endonuclease I precursor , at 4,114,361 to 4,115,083 _20125 OH686_20130: OH686_20130 - hypothetical protein, at 4,115,223 to 4,115,546 _20130 OH686_20135: OH686_20135 - Protein serine/threonine phosphatase PrpC, regulation of stationary phase, at 4,115,647 to 4,116,420 _20135 OH686_20140: OH686_20140 - serine/threonine protein kinase, at 4,116,438 to 4,118,126 _20140 Position (kb) 4115 4116 4117Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7 8 9at 4114.657 kb on - strand, within OH686_20125at 4114.657 kb on - strand, within OH686_20125at 4114.950 kb on + strand, within OH686_20125at 4114.951 kb on - strand, within OH686_20125at 4114.951 kb on - strand, within OH686_20125at 4114.951 kb on - strand, within OH686_20125at 4114.951 kb on - strand, within OH686_20125at 4114.951 kb on - strand, within OH686_20125at 4114.974 kb on + strand, within OH686_20125at 4114.974 kb on + strand, within OH686_20125at 4114.974 kb on + strand, within OH686_20125at 4114.974 kb on + strand, within OH686_20125at 4114.974 kb on + strand, within OH686_20125at 4114.975 kb on - strand, within OH686_20125at 4115.116 kb on + strandat 4115.116 kb on + strandat 4115.116 kb on + strandat 4115.165 kb on - strandat 4115.187 kb on + strandat 4115.187 kb on + strandat 4115.310 kb on + strand, within OH686_20130at 4115.310 kb on + strand, within OH686_20130at 4115.310 kb on + strand, within OH686_20130at 4115.310 kb on + strand, within OH686_20130at 4115.310 kb on + strand, within OH686_20130at 4115.311 kb on - strand, within OH686_20130at 4115.311 kb on - strand, within OH686_20130at 4115.311 kb on - strand, within OH686_20130at 4115.311 kb on - strand, within OH686_20130at 4115.311 kb on - strand, within OH686_20130at 4115.311 kb on - strand, within OH686_20130at 4115.364 kb on + strand, within OH686_20130at 4115.364 kb on + strand, within OH686_20130at 4115.364 kb on + strand, within OH686_20130at 4115.364 kb on + strand, within OH686_20130at 4115.364 kb on + strand, within OH686_20130at 4115.364 kb on + strand, within OH686_20130at 4115.365 kb on - strand, within OH686_20130at 4115.365 kb on - strand, within OH686_20130at 4115.365 kb on - strand, within OH686_20130at 4115.365 kb on - strand, within OH686_20130at 4115.365 kb on - strand, within OH686_20130at 4115.365 kb on - strand, within OH686_20130at 4115.365 kb on - strand, within OH686_20130at 4115.365 kb on - strand, within OH686_20130at 4115.373 kb on + strand, within OH686_20130at 4115.373 kb on + strand, within OH686_20130at 4115.374 kb on - strand, within OH686_20130at 4115.390 kb on - strand, within OH686_20130at 4115.403 kb on + strand, within OH686_20130at 4115.404 kb on - strand, within OH686_20130at 4115.523 kb on + strandat 4115.523 kb on + strandat 4115.523 kb on + strandat 4115.524 kb on - strandat 4115.524 kb on - strandat 4115.524 kb on - strandat 4115.524 kb on - strandat 4115.530 kb on + strandat 4115.530 kb on + strandat 4115.530 kb on + strandat 4115.531 kb on - strandat 4115.531 kb on - strandat 4115.531 kb on - strandat 4115.555 kb on + strandat 4115.556 kb on - strandat 4115.629 kb on + strandat 4115.629 kb on + strandat 4115.630 kb on - strandat 4115.630 kb on - strandat 4115.700 kb on + strandat 4115.701 kb on - strandat 4115.748 kb on - strand, within OH686_20135at 4115.916 kb on + strand, within OH686_20135at 4115.916 kb on + strand, within OH686_20135at 4116.318 kb on + strand, within OH686_20135at 4116.318 kb on + strand, within OH686_20135at 4116.318 kb on + strand, within OH686_20135at 4116.318 kb on + strand, within OH686_20135at 4116.319 kb on - strand, within OH686_20135at 4116.319 kb on - strand, within OH686_20135at 4116.319 kb on - strand, within OH686_20135at 4116.319 kb on - strand, within OH686_20135at 4116.319 kb on - strand, within OH686_20135at 4116.319 kb on - strand, within OH686_20135at 4116.319 kb on - strand, within OH686_20135at 4116.319 kb on - strand, within OH686_20135at 4116.319 kb on - strand, within OH686_20135at 4116.616 kb on + strand, within OH686_20140at 4116.616 kb on + strand, within OH686_20140at 4116.616 kb on + strand, within OH686_20140at 4116.616 kb on + strand, within OH686_20140at 4116.616 kb on + strand, within OH686_20140at 4116.616 kb on + strand, within OH686_20140at 4116.616 kb on + strand, within OH686_20140at 4116.616 kb on + strand, within OH686_20140at 4116.616 kb on + strand, within OH686_20140at 4116.616 kb on + strand, within OH686_20140at 4116.616 kb on + strand, within OH686_20140at 4116.616 kb on + strand, within OH686_20140at 4116.616 kb on + strand, within OH686_20140at 4116.616 kb on + strand, within OH686_20140at 4116.617 kb on - strand, within OH686_20140at 4116.617 kb on - strand, within OH686_20140at 4116.617 kb on - strand, within OH686_20140at 4116.617 kb on - strand, within OH686_20140at 4116.617 kb on - strand, within OH686_20140at 4116.617 kb on - strand, within OH686_20140at 4116.617 kb on - strand, within OH686_20140at 4116.617 kb on - strand, within OH686_20140at 4116.684 kb on + strand, within OH686_20140at 4116.684 kb on + strand, within OH686_20140at 4116.685 kb on - strand, within OH686_20140at 4116.687 kb on + strand, within OH686_20140at 4116.687 kb on + strand, within OH686_20140at 4116.687 kb on + strand, within OH686_20140at 4116.687 kb on + strand, within OH686_20140at 4116.688 kb on - strand, within OH686_20140at 4116.688 kb on - strand, within OH686_20140at 4116.688 kb on - strand, within OH686_20140at 4116.688 kb on - strand, within OH686_20140at 4116.688 kb on - strand, within OH686_20140at 4116.688 kb on - strand, within OH686_20140at 4116.957 kb on + strand, within OH686_20140at 4116.957 kb on + strand, within OH686_20140at 4116.957 kb on + strand, within OH686_20140at 4116.957 kb on + strand, within OH686_20140at 4116.957 kb on + strand, within OH686_20140at 4116.958 kb on - strand, within OH686_20140at 4116.958 kb on - strand, within OH686_20140at 4116.958 kb on - strand, within OH686_20140at 4117.011 kb on + strand, within OH686_20140at 4117.011 kb on + strand, within OH686_20140at 4117.011 kb on + strand, within OH686_20140at 4117.011 kb on + strand, within OH686_20140at 4117.011 kb on + strand, within OH686_20140at 4117.011 kb on + strand, within OH686_20140at 4117.011 kb on + strand, within OH686_20140at 4117.011 kb on + strand, within OH686_20140at 4117.011 kb on + strand, within OH686_20140at 4117.011 kb on + strand, within OH686_20140at 4117.011 kb on + strand, within OH686_20140at 4117.011 kb on + strand, within OH686_20140at 4117.011 kb on + strand, within OH686_20140at 4117.012 kb on - strand, within OH686_20140at 4117.012 kb on - strand, within OH686_20140at 4117.012 kb on - strand, within OH686_20140at 4117.012 kb on - strand, within OH686_20140at 4117.012 kb on - strand, within OH686_20140at 4117.012 kb on - strand, within OH686_20140at 4117.012 kb on - strand, within OH686_20140at 4117.012 kb on - strand, within OH686_20140at 4117.012 kb on - strand, within OH686_20140at 4117.012 kb on - strand, within OH686_20140at 4117.012 kb on - strand, within OH686_20140at 4117.012 kb on - strand, within OH686_20140at 4117.012 kb on - strand, within OH686_20140at 4117.012 kb on - strand, within OH686_20140at 4117.012 kb on - strand, within OH686_20140at 4117.012 kb on - strand, within OH686_20140at 4117.012 kb on - strand, within OH686_20140at 4117.074 kb on + strand, within OH686_20140at 4117.074 kb on + strand, within OH686_20140at 4117.075 kb on - strand, within OH686_20140at 4117.075 kb on - strand, within OH686_20140at 4117.075 kb on - strand, within OH686_20140at 4117.075 kb on - strand, within OH686_20140at 4117.075 kb on - strand, within OH686_20140at 4117.075 kb on - strand, within OH686_20140at 4117.075 kb on - strand, within OH686_20140at 4117.075 kb on - strand, within OH686_20140at 4117.075 kb on - strand, within OH686_20140at 4117.075 kb on - strand, within OH686_20140at 4117.075 kb on - strand, within OH686_20140at 4117.075 kb on - strand, within OH686_20140at 4117.075 kb on - strand, within OH686_20140at 4117.342 kb on + strand, within OH686_20140at 4117.342 kb on + strand, within OH686_20140at 4117.392 kb on + strand, within OH686_20140at 4117.392 kb on + strand, within OH686_20140at 4117.392 kb on + strand, within OH686_20140at 4117.392 kb on + strand, within OH686_20140at 4117.392 kb on + strand, within OH686_20140at 4117.392 kb on + strand, within OH686_20140at 4117.392 kb on + strand, within OH686_20140at 4117.393 kb on - strand, within OH686_20140at 4117.393 kb on - strand, within OH686_20140at 4117.393 kb on - strand, within OH686_20140at 4117.393 kb on - strand, within OH686_20140at 4117.393 kb on - strand, within OH686_20140at 4117.393 kb on - strand, within OH686_20140at 4117.393 kb on - strand, within OH686_20140

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction octanoate (C)
remove
4,114,657 - OH686_20125 0.41 +2.3
4,114,657 - OH686_20125 0.41 +1.2
4,114,950 + OH686_20125 0.81 -1.1
4,114,951 - OH686_20125 0.82 +1.3
4,114,951 - OH686_20125 0.82 -0.6
4,114,951 - OH686_20125 0.82 -1.2
4,114,951 - OH686_20125 0.82 -1.7
4,114,951 - OH686_20125 0.82 -0.4
4,114,974 + OH686_20125 0.85 -1.2
4,114,974 + OH686_20125 0.85 +1.4
4,114,974 + OH686_20125 0.85 +0.4
4,114,974 + OH686_20125 0.85 +0.9
4,114,974 + OH686_20125 0.85 -2.1
4,114,975 - OH686_20125 0.85 -0.2
4,115,116 + -1.6
4,115,116 + -2.1
4,115,116 + -1.4
4,115,165 - +0.3
4,115,187 + -2.0
4,115,187 + +0.2
4,115,310 + OH686_20130 0.27 +1.2
4,115,310 + OH686_20130 0.27 +2.2
4,115,310 + OH686_20130 0.27 +0.5
4,115,310 + OH686_20130 0.27 +0.2
4,115,310 + OH686_20130 0.27 -1.6
4,115,311 - OH686_20130 0.27 -1.0
4,115,311 - OH686_20130 0.27 +2.4
4,115,311 - OH686_20130 0.27 +0.8
4,115,311 - OH686_20130 0.27 -0.9
4,115,311 - OH686_20130 0.27 +0.2
4,115,311 - OH686_20130 0.27 +1.6
4,115,364 + OH686_20130 0.44 -1.5
4,115,364 + OH686_20130 0.44 -1.1
4,115,364 + OH686_20130 0.44 +1.1
4,115,364 + OH686_20130 0.44 -0.4
4,115,364 + OH686_20130 0.44 -0.5
4,115,364 + OH686_20130 0.44 -1.7
4,115,365 - OH686_20130 0.44 -0.5
4,115,365 - OH686_20130 0.44 -0.0
4,115,365 - OH686_20130 0.44 +1.1
4,115,365 - OH686_20130 0.44 -1.9
4,115,365 - OH686_20130 0.44 -2.6
4,115,365 - OH686_20130 0.44 +0.2
4,115,365 - OH686_20130 0.44 -0.0
4,115,365 - OH686_20130 0.44 +0.1
4,115,373 + OH686_20130 0.46 -1.5
4,115,373 + OH686_20130 0.46 -2.1
4,115,374 - OH686_20130 0.47 -0.9
4,115,390 - OH686_20130 0.52 +1.3
4,115,403 + OH686_20130 0.56 +0.1
4,115,404 - OH686_20130 0.56 -0.1
4,115,523 + +0.5
4,115,523 + -2.8
4,115,523 + +1.0
4,115,524 - +0.4
4,115,524 - +1.8
4,115,524 - -0.0
4,115,524 - +0.2
4,115,530 + -0.2
4,115,530 + +0.5
4,115,530 + +0.6
4,115,531 - +2.0
4,115,531 - -0.3
4,115,531 - -1.2
4,115,555 + -1.3
4,115,556 - -0.6
4,115,629 + -2.5
4,115,629 + -0.5
4,115,630 - -0.1
4,115,630 - -0.8
4,115,700 + -2.3
4,115,701 - +0.2
4,115,748 - OH686_20135 0.13 -1.5
4,115,916 + OH686_20135 0.35 +0.6
4,115,916 + OH686_20135 0.35 +0.2
4,116,318 + OH686_20135 0.87 +0.2
4,116,318 + OH686_20135 0.87 -1.6
4,116,318 + OH686_20135 0.87 -1.2
4,116,318 + OH686_20135 0.87 +1.5
4,116,319 - OH686_20135 0.87 +2.8
4,116,319 - OH686_20135 0.87 +3.4
4,116,319 - OH686_20135 0.87 -1.5
4,116,319 - OH686_20135 0.87 +0.7
4,116,319 - OH686_20135 0.87 +2.6
4,116,319 - OH686_20135 0.87 -0.9
4,116,319 - OH686_20135 0.87 -0.4
4,116,319 - OH686_20135 0.87 +0.0
4,116,319 - OH686_20135 0.87 +1.3
4,116,616 + OH686_20140 0.11 -2.1
4,116,616 + OH686_20140 0.11 +0.4
4,116,616 + OH686_20140 0.11 -0.8
4,116,616 + OH686_20140 0.11 +0.0
4,116,616 + OH686_20140 0.11 +0.0
4,116,616 + OH686_20140 0.11 -0.5
4,116,616 + OH686_20140 0.11 -0.3
4,116,616 + OH686_20140 0.11 -0.3
4,116,616 + OH686_20140 0.11 +0.0
4,116,616 + OH686_20140 0.11 -1.2
4,116,616 + OH686_20140 0.11 +0.5
4,116,616 + OH686_20140 0.11 +0.5
4,116,616 + OH686_20140 0.11 -0.5
4,116,616 + OH686_20140 0.11 +1.6
4,116,617 - OH686_20140 0.11 +0.2
4,116,617 - OH686_20140 0.11 +9.2
4,116,617 - OH686_20140 0.11 -3.0
4,116,617 - OH686_20140 0.11 +0.4
4,116,617 - OH686_20140 0.11 +0.7
4,116,617 - OH686_20140 0.11 +0.6
4,116,617 - OH686_20140 0.11 +0.5
4,116,617 - OH686_20140 0.11 +0.0
4,116,684 + OH686_20140 0.15 +0.0
4,116,684 + OH686_20140 0.15 -2.5
4,116,685 - OH686_20140 0.15 -1.8
4,116,687 + OH686_20140 0.15 -1.0
4,116,687 + OH686_20140 0.15 +1.7
4,116,687 + OH686_20140 0.15 +2.1
4,116,687 + OH686_20140 0.15 -0.5
4,116,688 - OH686_20140 0.15 -1.8
4,116,688 - OH686_20140 0.15 -1.5
4,116,688 - OH686_20140 0.15 -0.6
4,116,688 - OH686_20140 0.15 -0.3
4,116,688 - OH686_20140 0.15 -0.6
4,116,688 - OH686_20140 0.15 +0.5
4,116,957 + OH686_20140 0.31 +1.5
4,116,957 + OH686_20140 0.31 -0.1
4,116,957 + OH686_20140 0.31 +1.0
4,116,957 + OH686_20140 0.31 +1.0
4,116,957 + OH686_20140 0.31 -1.3
4,116,958 - OH686_20140 0.31 +0.8
4,116,958 - OH686_20140 0.31 +2.8
4,116,958 - OH686_20140 0.31 -0.2
4,117,011 + OH686_20140 0.34 +0.9
4,117,011 + OH686_20140 0.34 +0.8
4,117,011 + OH686_20140 0.34 -0.2
4,117,011 + OH686_20140 0.34 -1.1
4,117,011 + OH686_20140 0.34 -1.3
4,117,011 + OH686_20140 0.34 -1.8
4,117,011 + OH686_20140 0.34 -1.5
4,117,011 + OH686_20140 0.34 +1.0
4,117,011 + OH686_20140 0.34 -0.6
4,117,011 + OH686_20140 0.34 -1.1
4,117,011 + OH686_20140 0.34 +0.6
4,117,011 + OH686_20140 0.34 +1.2
4,117,011 + OH686_20140 0.34 -1.1
4,117,012 - OH686_20140 0.34 -0.3
4,117,012 - OH686_20140 0.34 -1.8
4,117,012 - OH686_20140 0.34 -0.4
4,117,012 - OH686_20140 0.34 -2.8
4,117,012 - OH686_20140 0.34 -0.1
4,117,012 - OH686_20140 0.34 -1.0
4,117,012 - OH686_20140 0.34 -2.7
4,117,012 - OH686_20140 0.34 +0.9
4,117,012 - OH686_20140 0.34 -2.2
4,117,012 - OH686_20140 0.34 +0.6
4,117,012 - OH686_20140 0.34 +0.9
4,117,012 - OH686_20140 0.34 -0.7
4,117,012 - OH686_20140 0.34 -0.9
4,117,012 - OH686_20140 0.34 +0.6
4,117,012 - OH686_20140 0.34 -1.4
4,117,012 - OH686_20140 0.34 -0.4
4,117,012 - OH686_20140 0.34 -0.7
4,117,074 + OH686_20140 0.38 -1.6
4,117,074 + OH686_20140 0.38 -1.9
4,117,075 - OH686_20140 0.38 -1.3
4,117,075 - OH686_20140 0.38 -1.3
4,117,075 - OH686_20140 0.38 +2.4
4,117,075 - OH686_20140 0.38 -1.0
4,117,075 - OH686_20140 0.38 -0.9
4,117,075 - OH686_20140 0.38 -0.8
4,117,075 - OH686_20140 0.38 -1.1
4,117,075 - OH686_20140 0.38 -0.2
4,117,075 - OH686_20140 0.38 +1.4
4,117,075 - OH686_20140 0.38 -0.3
4,117,075 - OH686_20140 0.38 +0.2
4,117,075 - OH686_20140 0.38 +0.3
4,117,075 - OH686_20140 0.38 -2.0
4,117,342 + OH686_20140 0.54 -0.6
4,117,342 + OH686_20140 0.54 +0.1
4,117,392 + OH686_20140 0.56 +1.6
4,117,392 + OH686_20140 0.56 -0.7
4,117,392 + OH686_20140 0.56 -2.1
4,117,392 + OH686_20140 0.56 -1.9
4,117,392 + OH686_20140 0.56 -2.4
4,117,392 + OH686_20140 0.56 -1.3
4,117,392 + OH686_20140 0.56 -1.0
4,117,393 - OH686_20140 0.57 +1.1
4,117,393 - OH686_20140 0.57 -0.8
4,117,393 - OH686_20140 0.57 +0.0
4,117,393 - OH686_20140 0.57 +0.3
4,117,393 - OH686_20140 0.57 -0.1
4,117,393 - OH686_20140 0.57 -1.6
4,117,393 - OH686_20140 0.57 +0.2

Or see this region's nucleotide sequence