Experiment: octanoate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OH686_09660 and OH686_09665 overlap by 1 nucleotides OH686_09665 and OH686_09670 overlap by 4 nucleotides OH686_09670 and OH686_09675 overlap by 4 nucleotides
OH686_09660: OH686_09660 - Serine/threonine protein kinase, at 1,972,957 to 1,974,378
_09660
OH686_09665: OH686_09665 - lipopolysaccharide kinase, at 1,974,378 to 1,975,121
_09665
OH686_09670: OH686_09670 - Heptose kinase WapQ, eukaryotic type, at 1,975,118 to 1,975,855
_09670
OH686_09675: OH686_09675 - Lipopolysaccharide core heptose(I) kinase RfaP, at 1,975,852 to 1,976,667
_09675
Position (kb) 1974
1975
1976 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1974.632 kb on - strand, within OH686_09665 at 1974.863 kb on - strand, within OH686_09665 at 1974.956 kb on - strand, within OH686_09665 at 1974.956 kb on - strand, within OH686_09665 at 1974.956 kb on - strand, within OH686_09665 at 1974.956 kb on - strand, within OH686_09665 at 1974.956 kb on - strand, within OH686_09665 at 1974.959 kb on - strand, within OH686_09665 at 1975.146 kb on - strand at 1975.146 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction octanoate (C) remove 1,974,632 - OH686_09665 0.34 -1.3 1,974,863 - OH686_09665 0.65 -3.1 1,974,956 - OH686_09665 0.78 -2.8 1,974,956 - OH686_09665 0.78 -1.0 1,974,956 - OH686_09665 0.78 -2.0 1,974,956 - OH686_09665 0.78 -1.5 1,974,956 - OH686_09665 0.78 +0.0 1,974,959 - OH686_09665 0.78 -2.3 1,975,146 - -0.4 1,975,146 - +0.2
Or see this region's nucleotide sequence