Strain Fitness in Pseudomonas sp. S08-1 around OH686_03905

Experiment: octanoate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_03895 and OH686_03900 overlap by 4 nucleotidesOH686_03900 and OH686_03905 overlap by 4 nucleotidesOH686_03905 and OH686_03910 overlap by 4 nucleotidesOH686_03910 and OH686_03915 are separated by 106 nucleotidesOH686_03915 and OH686_03920 are separated by 40 nucleotides OH686_03895: OH686_03895 - Electron transport complex protein RnfD, at 805,604 to 806,608 _03895 OH686_03900: OH686_03900 - Electron transport complex protein RnfG, at 806,605 to 807,204 _03900 OH686_03905: OH686_03905 - hypothetical protein, at 807,201 to 807,755 _03905 OH686_03910: OH686_03910 - endonuclease III, at 807,752 to 808,390 _03910 OH686_03915: OH686_03915 - Leucyl-tRNA synthetase, at 808,497 to 808,673 _03915 OH686_03920: OH686_03920 - Sensory box histidine kinase, at 808,714 to 809,787 _03920 Position (kb) 807 808Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 806.474 kb on + strand, within OH686_03895at 806.474 kb on + strand, within OH686_03895at 806.474 kb on + strand, within OH686_03895at 806.474 kb on + strand, within OH686_03895at 806.475 kb on - strand, within OH686_03895at 806.475 kb on - strand, within OH686_03895at 806.475 kb on - strand, within OH686_03895at 806.475 kb on - strand, within OH686_03895at 806.475 kb on - strand, within OH686_03895at 806.475 kb on - strand, within OH686_03895at 806.475 kb on - strand, within OH686_03895at 806.504 kb on + strand, within OH686_03895at 806.504 kb on + strand, within OH686_03895at 806.504 kb on + strand, within OH686_03895at 806.504 kb on + strand, within OH686_03895at 806.505 kb on - strand, within OH686_03895at 806.505 kb on - strand, within OH686_03895at 806.505 kb on - strand, within OH686_03895at 806.505 kb on - strand, within OH686_03895at 806.755 kb on + strand, within OH686_03900at 806.755 kb on + strand, within OH686_03900at 806.755 kb on + strand, within OH686_03900at 806.807 kb on + strand, within OH686_03900at 806.807 kb on + strand, within OH686_03900at 806.807 kb on + strand, within OH686_03900at 806.808 kb on - strand, within OH686_03900at 806.834 kb on - strand, within OH686_03900at 806.834 kb on - strand, within OH686_03900at 806.893 kb on + strand, within OH686_03900at 807.466 kb on + strand, within OH686_03905at 807.467 kb on - strand, within OH686_03905at 807.562 kb on + strand, within OH686_03905at 807.563 kb on - strand, within OH686_03905at 807.563 kb on - strand, within OH686_03905at 807.563 kb on - strand, within OH686_03905at 807.695 kb on + strand, within OH686_03905at 807.696 kb on - strand, within OH686_03905at 807.827 kb on + strand, within OH686_03910at 807.827 kb on + strand, within OH686_03910at 807.827 kb on + strand, within OH686_03910at 807.827 kb on + strand, within OH686_03910at 807.827 kb on + strand, within OH686_03910at 807.827 kb on + strand, within OH686_03910at 807.827 kb on + strand, within OH686_03910at 807.828 kb on - strand, within OH686_03910at 807.828 kb on - strand, within OH686_03910at 807.828 kb on - strand, within OH686_03910at 807.828 kb on - strand, within OH686_03910at 807.828 kb on - strand, within OH686_03910at 807.829 kb on + strand, within OH686_03910at 807.829 kb on + strand, within OH686_03910at 807.829 kb on + strand, within OH686_03910at 807.829 kb on + strand, within OH686_03910at 807.830 kb on - strand, within OH686_03910at 807.830 kb on - strand, within OH686_03910at 807.830 kb on - strand, within OH686_03910at 807.830 kb on - strand, within OH686_03910at 807.830 kb on - strand, within OH686_03910at 807.915 kb on - strand, within OH686_03910at 807.944 kb on + strand, within OH686_03910at 807.944 kb on + strand, within OH686_03910at 807.944 kb on + strand, within OH686_03910at 807.944 kb on + strand, within OH686_03910at 807.944 kb on + strand, within OH686_03910at 807.944 kb on + strand, within OH686_03910at 807.944 kb on + strand, within OH686_03910at 807.944 kb on + strand, within OH686_03910at 807.944 kb on + strand, within OH686_03910at 807.944 kb on + strand, within OH686_03910at 807.944 kb on + strand, within OH686_03910at 807.945 kb on - strand, within OH686_03910at 807.945 kb on - strand, within OH686_03910at 807.945 kb on - strand, within OH686_03910at 807.945 kb on - strand, within OH686_03910at 807.945 kb on - strand, within OH686_03910at 807.945 kb on - strand, within OH686_03910at 807.945 kb on - strand, within OH686_03910at 807.945 kb on - strand, within OH686_03910at 807.945 kb on - strand, within OH686_03910at 807.945 kb on - strand, within OH686_03910at 807.945 kb on - strand, within OH686_03910at 807.945 kb on - strand, within OH686_03910at 807.945 kb on - strand, within OH686_03910at 807.974 kb on + strand, within OH686_03910at 807.974 kb on + strand, within OH686_03910at 807.975 kb on - strand, within OH686_03910at 807.975 kb on - strand, within OH686_03910at 807.995 kb on + strand, within OH686_03910at 807.995 kb on + strand, within OH686_03910at 807.995 kb on + strand, within OH686_03910at 807.995 kb on + strand, within OH686_03910at 807.995 kb on + strand, within OH686_03910at 807.996 kb on - strand, within OH686_03910at 808.171 kb on + strand, within OH686_03910at 808.171 kb on + strand, within OH686_03910at 808.171 kb on + strand, within OH686_03910at 808.171 kb on + strand, within OH686_03910at 808.171 kb on + strand, within OH686_03910at 808.171 kb on + strand, within OH686_03910at 808.171 kb on + strand, within OH686_03910at 808.171 kb on + strand, within OH686_03910at 808.171 kb on + strand, within OH686_03910at 808.172 kb on - strand, within OH686_03910at 808.172 kb on - strand, within OH686_03910at 808.172 kb on - strand, within OH686_03910at 808.172 kb on - strand, within OH686_03910at 808.172 kb on - strand, within OH686_03910at 808.172 kb on - strand, within OH686_03910at 808.172 kb on - strand, within OH686_03910at 808.172 kb on - strand, within OH686_03910at 808.172 kb on - strand, within OH686_03910at 808.304 kb on + strand, within OH686_03910at 808.305 kb on - strand, within OH686_03910at 808.364 kb on + strandat 808.365 kb on - strandat 808.410 kb on + strandat 808.411 kb on - strandat 808.411 kb on - strandat 808.411 kb on - strandat 808.411 kb on - strandat 808.413 kb on + strandat 808.414 kb on - strandat 808.456 kb on + strandat 808.456 kb on + strandat 808.456 kb on + strandat 808.456 kb on + strandat 808.457 kb on - strandat 808.457 kb on - strandat 808.457 kb on - strandat 808.457 kb on - strandat 808.458 kb on + strandat 808.458 kb on + strandat 808.459 kb on - strandat 808.459 kb on - strandat 808.459 kb on - strandat 808.459 kb on - strandat 808.494 kb on + strandat 808.494 kb on + strandat 808.494 kb on + strandat 808.494 kb on + strandat 808.494 kb on + strandat 808.494 kb on + strandat 808.494 kb on + strandat 808.495 kb on - strandat 808.495 kb on - strandat 808.495 kb on - strandat 808.495 kb on - strandat 808.495 kb on - strandat 808.495 kb on - strandat 808.495 kb on - strandat 808.495 kb on - strandat 808.495 kb on - strandat 808.495 kb on - strandat 808.495 kb on - strandat 808.495 kb on - strandat 808.495 kb on - strandat 808.656 kb on + strandat 808.663 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction octanoate (C)
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806,474 + OH686_03895 0.87 +1.5
806,474 + OH686_03895 0.87 -1.7
806,474 + OH686_03895 0.87 -1.0
806,474 + OH686_03895 0.87 -0.3
806,475 - OH686_03895 0.87 -2.6
806,475 - OH686_03895 0.87 -0.2
806,475 - OH686_03895 0.87 +0.2
806,475 - OH686_03895 0.87 +0.7
806,475 - OH686_03895 0.87 -1.2
806,475 - OH686_03895 0.87 -0.2
806,475 - OH686_03895 0.87 +0.2
806,504 + OH686_03895 0.90 +0.5
806,504 + OH686_03895 0.90 +1.1
806,504 + OH686_03895 0.90 +2.0
806,504 + OH686_03895 0.90 -0.8
806,505 - OH686_03895 0.90 +0.8
806,505 - OH686_03895 0.90 +1.1
806,505 - OH686_03895 0.90 +3.0
806,505 - OH686_03895 0.90 -0.4
806,755 + OH686_03900 0.25 +1.2
806,755 + OH686_03900 0.25 +1.2
806,755 + OH686_03900 0.25 +1.0
806,807 + OH686_03900 0.34 +1.4
806,807 + OH686_03900 0.34 -0.1
806,807 + OH686_03900 0.34 -0.7
806,808 - OH686_03900 0.34 -0.7
806,834 - OH686_03900 0.38 -1.0
806,834 - OH686_03900 0.38 -0.2
806,893 + OH686_03900 0.48 -0.8
807,466 + OH686_03905 0.48 -1.3
807,467 - OH686_03905 0.48 +0.6
807,562 + OH686_03905 0.65 -2.7
807,563 - OH686_03905 0.65 -0.4
807,563 - OH686_03905 0.65 -0.7
807,563 - OH686_03905 0.65 -1.3
807,695 + OH686_03905 0.89 +0.3
807,696 - OH686_03905 0.89 -1.4
807,827 + OH686_03910 0.12 +0.3
807,827 + OH686_03910 0.12 -2.0
807,827 + OH686_03910 0.12 -0.5
807,827 + OH686_03910 0.12 -1.2
807,827 + OH686_03910 0.12 -1.2
807,827 + OH686_03910 0.12 -1.8
807,827 + OH686_03910 0.12 +0.7
807,828 - OH686_03910 0.12 -2.4
807,828 - OH686_03910 0.12 +1.1
807,828 - OH686_03910 0.12 +0.5
807,828 - OH686_03910 0.12 -0.7
807,828 - OH686_03910 0.12 +1.4
807,829 + OH686_03910 0.12 +0.1
807,829 + OH686_03910 0.12 +0.5
807,829 + OH686_03910 0.12 -1.5
807,829 + OH686_03910 0.12 -0.3
807,830 - OH686_03910 0.12 +2.3
807,830 - OH686_03910 0.12 +0.2
807,830 - OH686_03910 0.12 -0.9
807,830 - OH686_03910 0.12 +0.2
807,830 - OH686_03910 0.12 -1.2
807,915 - OH686_03910 0.26 -0.5
807,944 + OH686_03910 0.30 -3.2
807,944 + OH686_03910 0.30 -0.9
807,944 + OH686_03910 0.30 -0.7
807,944 + OH686_03910 0.30 +1.4
807,944 + OH686_03910 0.30 +0.1
807,944 + OH686_03910 0.30 +0.3
807,944 + OH686_03910 0.30 -2.0
807,944 + OH686_03910 0.30 +1.3
807,944 + OH686_03910 0.30 -1.5
807,944 + OH686_03910 0.30 -0.2
807,944 + OH686_03910 0.30 -1.3
807,945 - OH686_03910 0.30 +0.8
807,945 - OH686_03910 0.30 +1.3
807,945 - OH686_03910 0.30 -3.2
807,945 - OH686_03910 0.30 +0.6
807,945 - OH686_03910 0.30 -0.9
807,945 - OH686_03910 0.30 -1.0
807,945 - OH686_03910 0.30 -1.7
807,945 - OH686_03910 0.30 -2.6
807,945 - OH686_03910 0.30 -0.1
807,945 - OH686_03910 0.30 -1.8
807,945 - OH686_03910 0.30 +2.7
807,945 - OH686_03910 0.30 +1.0
807,945 - OH686_03910 0.30 +1.3
807,974 + OH686_03910 0.35 -0.5
807,974 + OH686_03910 0.35 +0.2
807,975 - OH686_03910 0.35 -2.2
807,975 - OH686_03910 0.35 +1.6
807,995 + OH686_03910 0.38 +1.6
807,995 + OH686_03910 0.38 -1.1
807,995 + OH686_03910 0.38 -0.0
807,995 + OH686_03910 0.38 +0.3
807,995 + OH686_03910 0.38 -0.5
807,996 - OH686_03910 0.38 -0.1
808,171 + OH686_03910 0.66 -1.8
808,171 + OH686_03910 0.66 -1.2
808,171 + OH686_03910 0.66 -0.1
808,171 + OH686_03910 0.66 -0.3
808,171 + OH686_03910 0.66 +0.8
808,171 + OH686_03910 0.66 -1.6
808,171 + OH686_03910 0.66 +0.5
808,171 + OH686_03910 0.66 -1.2
808,171 + OH686_03910 0.66 +0.4
808,172 - OH686_03910 0.66 -0.6
808,172 - OH686_03910 0.66 -0.1
808,172 - OH686_03910 0.66 -0.3
808,172 - OH686_03910 0.66 -1.9
808,172 - OH686_03910 0.66 -0.4
808,172 - OH686_03910 0.66 -0.2
808,172 - OH686_03910 0.66 +2.6
808,172 - OH686_03910 0.66 -0.7
808,172 - OH686_03910 0.66 -1.1
808,304 + OH686_03910 0.86 -2.9
808,305 - OH686_03910 0.87 -0.6
808,364 + +1.3
808,365 - -1.3
808,410 + +0.1
808,411 - +1.6
808,411 - +1.0
808,411 - -1.2
808,411 - +1.3
808,413 + +0.6
808,414 - -2.4
808,456 + -0.2
808,456 + +0.1
808,456 + +0.8
808,456 + +0.3
808,457 - -2.4
808,457 - -0.4
808,457 - -1.5
808,457 - -3.2
808,458 + -0.2
808,458 + -1.5
808,459 - +0.2
808,459 - -0.0
808,459 - -0.5
808,459 - +0.6
808,494 + +0.2
808,494 + -0.6
808,494 + -0.8
808,494 + -1.6
808,494 + -1.1
808,494 + -2.6
808,494 + -1.9
808,495 - -0.6
808,495 - -0.8
808,495 - +0.4
808,495 - -2.0
808,495 - -1.8
808,495 - -1.5
808,495 - -0.4
808,495 - -1.5
808,495 - +1.6
808,495 - +0.1
808,495 - -0.6
808,495 - -1.1
808,495 - +1.6
808,656 + -0.7
808,663 - -0.8

Or see this region's nucleotide sequence