Strain Fitness in Pseudomonas sp. S08-1 around OH686_02545

Experiment: octanoate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_02540 and OH686_02545 are separated by 12 nucleotidesOH686_02545 and OH686_02550 are separated by 13 nucleotides OH686_02540: OH686_02540 - Von Willebrand factor type A domain protein, associated with Flp pilus assembly, at 540,860 to 542,266 _02540 OH686_02545: OH686_02545 - hypothetical protein, at 542,279 to 542,548 _02545 OH686_02550: OH686_02550 - Type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly, at 542,562 to 544,037 _02550 Position (kb) 542 543Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 541.337 kb on - strand, within OH686_02540at 541.337 kb on - strand, within OH686_02540at 541.337 kb on - strand, within OH686_02540at 541.337 kb on - strand, within OH686_02540at 541.413 kb on + strand, within OH686_02540at 541.413 kb on + strand, within OH686_02540at 541.413 kb on + strand, within OH686_02540at 541.414 kb on - strand, within OH686_02540at 541.414 kb on - strand, within OH686_02540at 541.414 kb on - strand, within OH686_02540at 541.438 kb on - strand, within OH686_02540at 541.670 kb on + strand, within OH686_02540at 541.671 kb on - strand, within OH686_02540at 541.671 kb on - strand, within OH686_02540at 541.671 kb on - strand, within OH686_02540at 541.878 kb on + strand, within OH686_02540at 541.879 kb on - strand, within OH686_02540at 541.879 kb on - strand, within OH686_02540at 541.879 kb on - strand, within OH686_02540at 542.137 kb on + strandat 542.137 kb on + strandat 542.137 kb on + strandat 542.137 kb on + strandat 542.137 kb on + strandat 542.138 kb on - strandat 542.138 kb on - strandat 542.138 kb on - strandat 542.138 kb on - strandat 542.138 kb on - strandat 542.138 kb on - strandat 542.138 kb on - strandat 542.138 kb on - strandat 542.138 kb on - strandat 542.138 kb on - strandat 542.201 kb on + strandat 542.201 kb on + strandat 542.281 kb on - strandat 542.281 kb on - strandat 542.351 kb on + strand, within OH686_02545at 542.351 kb on + strand, within OH686_02545at 542.352 kb on - strand, within OH686_02545at 542.352 kb on - strand, within OH686_02545at 542.352 kb on - strand, within OH686_02545at 542.439 kb on + strand, within OH686_02545at 542.439 kb on + strand, within OH686_02545at 542.439 kb on + strand, within OH686_02545at 542.451 kb on + strand, within OH686_02545at 542.451 kb on + strand, within OH686_02545at 542.451 kb on + strand, within OH686_02545at 542.451 kb on + strand, within OH686_02545at 542.451 kb on + strand, within OH686_02545at 542.451 kb on + strand, within OH686_02545at 542.452 kb on - strand, within OH686_02545at 542.452 kb on - strand, within OH686_02545at 542.490 kb on + strand, within OH686_02545at 542.490 kb on + strand, within OH686_02545at 542.490 kb on + strand, within OH686_02545at 542.491 kb on - strand, within OH686_02545at 542.491 kb on - strand, within OH686_02545at 542.491 kb on - strand, within OH686_02545at 542.491 kb on - strand, within OH686_02545at 542.656 kb on + strandat 542.656 kb on + strandat 542.656 kb on + strandat 542.657 kb on - strandat 542.657 kb on - strandat 542.657 kb on - strandat 542.657 kb on - strandat 542.904 kb on + strand, within OH686_02550at 542.904 kb on + strand, within OH686_02550at 542.905 kb on - strand, within OH686_02550at 542.905 kb on - strand, within OH686_02550at 543.103 kb on + strand, within OH686_02550at 543.103 kb on + strand, within OH686_02550at 543.104 kb on - strand, within OH686_02550at 543.104 kb on - strand, within OH686_02550at 543.104 kb on - strand, within OH686_02550at 543.104 kb on - strand, within OH686_02550at 543.306 kb on + strand, within OH686_02550at 543.306 kb on + strand, within OH686_02550at 543.306 kb on + strand, within OH686_02550at 543.306 kb on + strand, within OH686_02550at 543.306 kb on + strand, within OH686_02550at 543.306 kb on + strand, within OH686_02550at 543.306 kb on + strand, within OH686_02550at 543.307 kb on - strand, within OH686_02550at 543.307 kb on - strand, within OH686_02550at 543.307 kb on - strand, within OH686_02550at 543.307 kb on - strand, within OH686_02550at 543.307 kb on - strand, within OH686_02550

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Per-strain Table

Position Strand Gene LocusTag Fraction octanoate (C)
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541,337 - OH686_02540 0.34 -1.2
541,337 - OH686_02540 0.34 -0.4
541,337 - OH686_02540 0.34 -2.1
541,337 - OH686_02540 0.34 +1.7
541,413 + OH686_02540 0.39 -0.7
541,413 + OH686_02540 0.39 +1.5
541,413 + OH686_02540 0.39 -0.2
541,414 - OH686_02540 0.39 -0.8
541,414 - OH686_02540 0.39 -1.5
541,414 - OH686_02540 0.39 -2.1
541,438 - OH686_02540 0.41 -0.3
541,670 + OH686_02540 0.58 -1.3
541,671 - OH686_02540 0.58 -0.6
541,671 - OH686_02540 0.58 -2.1
541,671 - OH686_02540 0.58 -1.1
541,878 + OH686_02540 0.72 -0.3
541,879 - OH686_02540 0.72 -0.7
541,879 - OH686_02540 0.72 +0.1
541,879 - OH686_02540 0.72 -1.6
542,137 + -0.4
542,137 + +2.2
542,137 + -2.0
542,137 + -0.7
542,137 + +0.4
542,138 - -0.6
542,138 - +5.6
542,138 - -0.6
542,138 - -1.7
542,138 - -2.1
542,138 - -2.4
542,138 - +0.1
542,138 - -1.5
542,138 - -2.9
542,138 - +1.8
542,201 + -1.2
542,201 + +1.9
542,281 - -1.6
542,281 - -0.9
542,351 + OH686_02545 0.27 -1.3
542,351 + OH686_02545 0.27 -0.9
542,352 - OH686_02545 0.27 -0.2
542,352 - OH686_02545 0.27 +0.7
542,352 - OH686_02545 0.27 +0.2
542,439 + OH686_02545 0.59 -3.0
542,439 + OH686_02545 0.59 -1.9
542,439 + OH686_02545 0.59 -1.2
542,451 + OH686_02545 0.64 -0.5
542,451 + OH686_02545 0.64 -1.8
542,451 + OH686_02545 0.64 -0.0
542,451 + OH686_02545 0.64 -0.6
542,451 + OH686_02545 0.64 +0.5
542,451 + OH686_02545 0.64 +0.4
542,452 - OH686_02545 0.64 +0.7
542,452 - OH686_02545 0.64 +1.4
542,490 + OH686_02545 0.78 -0.8
542,490 + OH686_02545 0.78 -1.5
542,490 + OH686_02545 0.78 -1.9
542,491 - OH686_02545 0.79 -2.4
542,491 - OH686_02545 0.79 +0.1
542,491 - OH686_02545 0.79 -1.2
542,491 - OH686_02545 0.79 +0.4
542,656 + -1.9
542,656 + -0.4
542,656 + +0.2
542,657 - +1.4
542,657 - -0.7
542,657 - -0.9
542,657 - -1.6
542,904 + OH686_02550 0.23 +0.1
542,904 + OH686_02550 0.23 +0.7
542,905 - OH686_02550 0.23 -1.0
542,905 - OH686_02550 0.23 +2.4
543,103 + OH686_02550 0.37 -1.9
543,103 + OH686_02550 0.37 -2.3
543,104 - OH686_02550 0.37 -0.2
543,104 - OH686_02550 0.37 -2.2
543,104 - OH686_02550 0.37 -1.9
543,104 - OH686_02550 0.37 +0.2
543,306 + OH686_02550 0.50 +0.4
543,306 + OH686_02550 0.50 +0.7
543,306 + OH686_02550 0.50 -0.0
543,306 + OH686_02550 0.50 -0.3
543,306 + OH686_02550 0.50 +2.0
543,306 + OH686_02550 0.50 -1.1
543,306 + OH686_02550 0.50 -1.5
543,307 - OH686_02550 0.50 +2.2
543,307 - OH686_02550 0.50 +0.4
543,307 - OH686_02550 0.50 -0.3
543,307 - OH686_02550 0.50 -1.3
543,307 - OH686_02550 0.50 -2.4

Or see this region's nucleotide sequence