Experiment: octanoate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OH686_02220 and OH686_02225 are separated by 46 nucleotides OH686_02225 and OH686_02230 overlap by 8 nucleotides OH686_02230 and OH686_02235 are separated by 97 nucleotides
OH686_02220: OH686_02220 - cadmium-translocating P-type ATPase, at 476,238 to 478,643
_02220
OH686_02225: OH686_02225 - cytochrome oxidase maturation protein, cbb3-type, at 478,690 to 478,896
_02225
OH686_02230: OH686_02230 - Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, putative membrane copper tolerance protein, at 478,889 to 479,572
_02230
OH686_02235: OH686_02235 - oxygen-independent coproporphyrinogen III oxidase, at 479,670 to 481,052
_02235
Position (kb) 478
479
480 Strain fitness (log2 ratio) -2
-1
0
1
2 at 478.515 kb on + strand at 478.703 kb on - strand at 478.703 kb on - strand at 479.043 kb on - strand, within OH686_02230 at 479.635 kb on + strand at 479.636 kb on - strand at 479.663 kb on + strand at 479.663 kb on + strand at 479.664 kb on - strand at 479.733 kb on + strand at 479.733 kb on + strand at 479.734 kb on - strand at 479.734 kb on - strand at 479.743 kb on - strand at 479.838 kb on + strand, within OH686_02235 at 479.838 kb on + strand, within OH686_02235 at 479.838 kb on + strand, within OH686_02235 at 479.839 kb on - strand, within OH686_02235 at 479.871 kb on + strand, within OH686_02235 at 479.871 kb on + strand, within OH686_02235 at 479.872 kb on - strand, within OH686_02235 at 479.872 kb on - strand, within OH686_02235 at 479.872 kb on - strand, within OH686_02235 at 479.872 kb on - strand, within OH686_02235 at 479.872 kb on - strand, within OH686_02235 at 479.874 kb on + strand, within OH686_02235 at 479.874 kb on + strand, within OH686_02235 at 479.874 kb on + strand, within OH686_02235 at 479.874 kb on + strand, within OH686_02235 at 479.874 kb on + strand, within OH686_02235 at 479.874 kb on + strand, within OH686_02235 at 479.875 kb on - strand, within OH686_02235 at 479.875 kb on - strand, within OH686_02235 at 479.875 kb on - strand, within OH686_02235 at 479.875 kb on - strand, within OH686_02235 at 479.925 kb on + strand, within OH686_02235 at 479.926 kb on - strand, within OH686_02235 at 480.105 kb on + strand, within OH686_02235 at 480.106 kb on - strand, within OH686_02235 at 480.106 kb on - strand, within OH686_02235 at 480.315 kb on + strand, within OH686_02235 at 480.315 kb on + strand, within OH686_02235 at 480.315 kb on + strand, within OH686_02235 at 480.315 kb on + strand, within OH686_02235 at 480.315 kb on + strand, within OH686_02235 at 480.315 kb on + strand, within OH686_02235 at 480.316 kb on - strand, within OH686_02235 at 480.316 kb on - strand, within OH686_02235 at 480.316 kb on - strand, within OH686_02235 at 480.316 kb on - strand, within OH686_02235 at 480.316 kb on - strand, within OH686_02235 at 480.316 kb on - strand, within OH686_02235 at 480.405 kb on + strand, within OH686_02235 at 480.405 kb on + strand, within OH686_02235 at 480.405 kb on + strand, within OH686_02235 at 480.405 kb on + strand, within OH686_02235 at 480.405 kb on + strand, within OH686_02235 at 480.406 kb on - strand, within OH686_02235 at 480.406 kb on - strand, within OH686_02235 at 480.428 kb on + strand, within OH686_02235 at 480.428 kb on + strand, within OH686_02235 at 480.429 kb on - strand, within OH686_02235 at 480.531 kb on + strand, within OH686_02235 at 480.531 kb on + strand, within OH686_02235 at 480.531 kb on + strand, within OH686_02235 at 480.531 kb on + strand, within OH686_02235 at 480.531 kb on + strand, within OH686_02235 at 480.531 kb on + strand, within OH686_02235 at 480.532 kb on - strand, within OH686_02235 at 480.532 kb on - strand, within OH686_02235 at 480.532 kb on - strand, within OH686_02235 at 480.532 kb on - strand, within OH686_02235 at 480.532 kb on - strand, within OH686_02235 at 480.532 kb on - strand, within OH686_02235 at 480.532 kb on - strand, within OH686_02235 at 480.532 kb on - strand, within OH686_02235 at 480.532 kb on - strand, within OH686_02235 at 480.532 kb on - strand, within OH686_02235 at 480.532 kb on - strand, within OH686_02235 at 480.532 kb on - strand, within OH686_02235 at 480.532 kb on - strand, within OH686_02235 at 480.534 kb on - strand, within OH686_02235 at 480.534 kb on - strand, within OH686_02235
Per-strain Table
Position Strand Gene LocusTag Fraction octanoate (C) remove 478,515 + +1.0 478,703 - +1.6 478,703 - +1.6 479,043 - OH686_02230 0.23 +1.6 479,635 + -2.7 479,636 - -1.0 479,663 + +1.0 479,663 + -0.2 479,664 - -2.2 479,733 + +0.0 479,733 + +0.5 479,734 - -1.2 479,734 - +1.6 479,743 - -1.0 479,838 + OH686_02235 0.12 -2.6 479,838 + OH686_02235 0.12 -1.2 479,838 + OH686_02235 0.12 +1.1 479,839 - OH686_02235 0.12 -0.7 479,871 + OH686_02235 0.15 -0.1 479,871 + OH686_02235 0.15 +0.2 479,872 - OH686_02235 0.15 -1.2 479,872 - OH686_02235 0.15 +0.5 479,872 - OH686_02235 0.15 -1.3 479,872 - OH686_02235 0.15 -1.1 479,872 - OH686_02235 0.15 +0.1 479,874 + OH686_02235 0.15 -1.5 479,874 + OH686_02235 0.15 +0.4 479,874 + OH686_02235 0.15 -0.2 479,874 + OH686_02235 0.15 +0.0 479,874 + OH686_02235 0.15 -0.2 479,874 + OH686_02235 0.15 -0.6 479,875 - OH686_02235 0.15 -1.3 479,875 - OH686_02235 0.15 +1.6 479,875 - OH686_02235 0.15 +1.0 479,875 - OH686_02235 0.15 +0.6 479,925 + OH686_02235 0.18 -1.9 479,926 - OH686_02235 0.19 +1.0 480,105 + OH686_02235 0.31 +1.6 480,106 - OH686_02235 0.32 +0.1 480,106 - OH686_02235 0.32 -1.7 480,315 + OH686_02235 0.47 -1.3 480,315 + OH686_02235 0.47 -0.2 480,315 + OH686_02235 0.47 +0.0 480,315 + OH686_02235 0.47 -1.9 480,315 + OH686_02235 0.47 +1.3 480,315 + OH686_02235 0.47 -0.2 480,316 - OH686_02235 0.47 -0.7 480,316 - OH686_02235 0.47 -0.1 480,316 - OH686_02235 0.47 +0.9 480,316 - OH686_02235 0.47 +0.6 480,316 - OH686_02235 0.47 -0.5 480,316 - OH686_02235 0.47 +1.4 480,405 + OH686_02235 0.53 +0.5 480,405 + OH686_02235 0.53 -0.6 480,405 + OH686_02235 0.53 -0.6 480,405 + OH686_02235 0.53 -0.2 480,405 + OH686_02235 0.53 +0.1 480,406 - OH686_02235 0.53 +1.8 480,406 - OH686_02235 0.53 -1.7 480,428 + OH686_02235 0.55 +0.3 480,428 + OH686_02235 0.55 +1.1 480,429 - OH686_02235 0.55 -0.7 480,531 + OH686_02235 0.62 -0.2 480,531 + OH686_02235 0.62 -0.9 480,531 + OH686_02235 0.62 +2.6 480,531 + OH686_02235 0.62 -0.4 480,531 + OH686_02235 0.62 -1.1 480,531 + OH686_02235 0.62 -2.5 480,532 - OH686_02235 0.62 -2.1 480,532 - OH686_02235 0.62 +0.4 480,532 - OH686_02235 0.62 +0.8 480,532 - OH686_02235 0.62 -0.8 480,532 - OH686_02235 0.62 -0.3 480,532 - OH686_02235 0.62 +2.2 480,532 - OH686_02235 0.62 -1.7 480,532 - OH686_02235 0.62 -0.2 480,532 - OH686_02235 0.62 +0.3 480,532 - OH686_02235 0.62 -1.7 480,532 - OH686_02235 0.62 -1.1 480,532 - OH686_02235 0.62 -1.3 480,532 - OH686_02235 0.62 +0.6 480,534 - OH686_02235 0.62 -0.4 480,534 - OH686_02235 0.62 -1.6
Or see this region's nucleotide sequence