Strain Fitness in Serratia liquefaciens MT49 around IAI46_25085

Experiment: Cadmium acetate 40 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_25080 and IAI46_25085 are separated by 283 nucleotidesIAI46_25085 and IAI46_25090 are separated by 2 nucleotides IAI46_25080: IAI46_25080 - low affinity potassium transporter Kup, at 5,354,458 to 5,356,326 _25080 IAI46_25085: IAI46_25085 - ATPase RavA, at 5,356,610 to 5,358,118 _25085 IAI46_25090: IAI46_25090 - ATPase RavA stimulator ViaA, at 5,358,121 to 5,359,584 _25090 Position (kb) 5356 5357 5358 5359Strain fitness (log2 ratio) -2 -1 0 1 2at 5355.632 kb on + strand, within IAI46_25080at 5355.632 kb on + strand, within IAI46_25080at 5355.696 kb on + strand, within IAI46_25080at 5355.697 kb on - strand, within IAI46_25080at 5355.697 kb on - strand, within IAI46_25080at 5355.697 kb on - strand, within IAI46_25080at 5355.697 kb on - strand, within IAI46_25080at 5355.697 kb on - strand, within IAI46_25080at 5355.697 kb on - strand, within IAI46_25080at 5355.697 kb on - strand, within IAI46_25080at 5355.698 kb on + strand, within IAI46_25080at 5355.699 kb on - strand, within IAI46_25080at 5355.699 kb on - strand, within IAI46_25080at 5355.763 kb on - strand, within IAI46_25080at 5355.883 kb on + strand, within IAI46_25080at 5355.900 kb on + strand, within IAI46_25080at 5355.900 kb on + strand, within IAI46_25080at 5355.902 kb on + strand, within IAI46_25080at 5355.902 kb on + strand, within IAI46_25080at 5355.903 kb on - strand, within IAI46_25080at 5355.903 kb on - strand, within IAI46_25080at 5355.903 kb on - strand, within IAI46_25080at 5355.940 kb on + strand, within IAI46_25080at 5355.986 kb on + strand, within IAI46_25080at 5356.032 kb on + strand, within IAI46_25080at 5356.047 kb on + strand, within IAI46_25080at 5356.047 kb on + strand, within IAI46_25080at 5356.048 kb on - strand, within IAI46_25080at 5356.048 kb on - strand, within IAI46_25080at 5356.048 kb on - strand, within IAI46_25080at 5356.050 kb on + strand, within IAI46_25080at 5356.050 kb on + strand, within IAI46_25080at 5356.050 kb on + strand, within IAI46_25080at 5356.051 kb on - strand, within IAI46_25080at 5356.098 kb on + strand, within IAI46_25080at 5356.115 kb on + strand, within IAI46_25080at 5356.115 kb on + strand, within IAI46_25080at 5356.115 kb on + strand, within IAI46_25080at 5356.115 kb on + strand, within IAI46_25080at 5356.115 kb on + strand, within IAI46_25080at 5356.116 kb on - strand, within IAI46_25080at 5356.116 kb on - strand, within IAI46_25080at 5356.116 kb on - strand, within IAI46_25080at 5356.116 kb on - strand, within IAI46_25080at 5356.116 kb on - strand, within IAI46_25080at 5356.116 kb on - strand, within IAI46_25080at 5356.116 kb on - strand, within IAI46_25080at 5356.116 kb on - strand, within IAI46_25080at 5356.124 kb on + strand, within IAI46_25080at 5356.124 kb on + strand, within IAI46_25080at 5356.125 kb on - strand, within IAI46_25080at 5356.125 kb on - strand, within IAI46_25080at 5356.236 kb on + strandat 5356.236 kb on + strandat 5356.236 kb on + strandat 5356.237 kb on - strandat 5356.237 kb on - strandat 5356.239 kb on - strandat 5356.311 kb on + strandat 5356.311 kb on + strandat 5356.311 kb on + strandat 5356.311 kb on + strandat 5356.312 kb on - strandat 5356.326 kb on + strandat 5356.326 kb on + strandat 5356.327 kb on - strandat 5356.340 kb on - strandat 5356.342 kb on + strandat 5356.343 kb on - strandat 5356.382 kb on - strandat 5356.390 kb on + strandat 5356.391 kb on - strandat 5356.391 kb on - strandat 5356.391 kb on - strandat 5356.423 kb on + strandat 5356.423 kb on + strandat 5356.423 kb on + strandat 5356.424 kb on - strandat 5356.435 kb on - strandat 5356.435 kb on - strandat 5356.435 kb on - strandat 5356.435 kb on - strandat 5356.437 kb on - strandat 5356.447 kb on + strandat 5356.448 kb on - strandat 5356.448 kb on - strandat 5356.453 kb on + strandat 5356.454 kb on - strandat 5356.454 kb on - strandat 5356.454 kb on - strandat 5356.454 kb on - strandat 5356.455 kb on + strandat 5356.455 kb on + strandat 5356.456 kb on - strandat 5356.456 kb on - strandat 5356.531 kb on + strandat 5356.532 kb on - strandat 5356.533 kb on + strandat 5356.534 kb on - strandat 5356.568 kb on - strandat 5356.584 kb on + strandat 5356.585 kb on - strandat 5356.606 kb on + strandat 5356.606 kb on + strandat 5356.607 kb on - strandat 5356.607 kb on - strandat 5356.676 kb on + strandat 5356.676 kb on + strandat 5356.786 kb on - strand, within IAI46_25085at 5356.821 kb on - strand, within IAI46_25085at 5356.821 kb on - strand, within IAI46_25085at 5356.821 kb on - strand, within IAI46_25085at 5357.079 kb on + strand, within IAI46_25085at 5357.111 kb on + strand, within IAI46_25085at 5357.111 kb on + strand, within IAI46_25085at 5357.112 kb on - strand, within IAI46_25085at 5357.112 kb on - strand, within IAI46_25085at 5357.127 kb on + strand, within IAI46_25085at 5357.127 kb on + strand, within IAI46_25085at 5357.127 kb on + strand, within IAI46_25085at 5357.128 kb on - strand, within IAI46_25085at 5357.128 kb on - strand, within IAI46_25085at 5357.128 kb on - strand, within IAI46_25085at 5357.243 kb on + strand, within IAI46_25085at 5357.243 kb on + strand, within IAI46_25085at 5357.243 kb on + strand, within IAI46_25085at 5357.243 kb on + strand, within IAI46_25085at 5357.243 kb on + strand, within IAI46_25085at 5357.244 kb on - strand, within IAI46_25085at 5357.244 kb on - strand, within IAI46_25085at 5357.304 kb on + strand, within IAI46_25085at 5357.348 kb on + strand, within IAI46_25085at 5357.349 kb on - strand, within IAI46_25085at 5357.349 kb on - strand, within IAI46_25085at 5357.349 kb on - strand, within IAI46_25085at 5357.349 kb on - strand, within IAI46_25085at 5357.349 kb on - strand, within IAI46_25085at 5357.407 kb on - strand, within IAI46_25085at 5357.482 kb on - strand, within IAI46_25085at 5357.482 kb on - strand, within IAI46_25085at 5357.482 kb on - strand, within IAI46_25085at 5357.502 kb on + strand, within IAI46_25085at 5357.503 kb on - strand, within IAI46_25085at 5357.528 kb on + strand, within IAI46_25085at 5357.528 kb on + strand, within IAI46_25085at 5357.529 kb on - strand, within IAI46_25085at 5357.529 kb on - strand, within IAI46_25085at 5357.731 kb on + strand, within IAI46_25085at 5357.752 kb on + strand, within IAI46_25085at 5357.753 kb on - strand, within IAI46_25085at 5357.799 kb on + strand, within IAI46_25085at 5357.800 kb on - strand, within IAI46_25085at 5357.918 kb on - strand, within IAI46_25085at 5357.919 kb on + strand, within IAI46_25085at 5357.919 kb on + strand, within IAI46_25085at 5357.919 kb on + strand, within IAI46_25085at 5357.920 kb on - strand, within IAI46_25085at 5357.920 kb on - strand, within IAI46_25085at 5358.025 kb on + strandat 5358.116 kb on + strandat 5358.117 kb on - strandat 5358.195 kb on + strandat 5358.195 kb on + strandat 5358.195 kb on + strandat 5358.343 kb on + strand, within IAI46_25090at 5358.344 kb on - strand, within IAI46_25090at 5358.365 kb on + strand, within IAI46_25090at 5358.365 kb on + strand, within IAI46_25090at 5358.366 kb on - strand, within IAI46_25090at 5358.376 kb on - strand, within IAI46_25090at 5358.390 kb on + strand, within IAI46_25090at 5358.391 kb on - strand, within IAI46_25090at 5358.391 kb on - strand, within IAI46_25090at 5358.439 kb on + strand, within IAI46_25090at 5358.439 kb on + strand, within IAI46_25090at 5358.439 kb on + strand, within IAI46_25090at 5358.439 kb on + strand, within IAI46_25090at 5358.439 kb on + strand, within IAI46_25090at 5358.439 kb on + strand, within IAI46_25090at 5358.518 kb on + strand, within IAI46_25090at 5358.519 kb on - strand, within IAI46_25090at 5358.519 kb on - strand, within IAI46_25090at 5358.799 kb on + strand, within IAI46_25090at 5358.799 kb on + strand, within IAI46_25090at 5358.800 kb on - strand, within IAI46_25090at 5358.800 kb on - strand, within IAI46_25090at 5358.800 kb on - strand, within IAI46_25090at 5358.800 kb on - strand, within IAI46_25090at 5358.894 kb on + strand, within IAI46_25090at 5359.044 kb on - strand, within IAI46_25090at 5359.044 kb on - strand, within IAI46_25090

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Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium acetate 40 uM, aerobic
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5,355,632 + IAI46_25080 0.63 +2.1
5,355,632 + IAI46_25080 0.63 -0.4
5,355,696 + IAI46_25080 0.66 -0.2
5,355,697 - IAI46_25080 0.66 +1.6
5,355,697 - IAI46_25080 0.66 +0.1
5,355,697 - IAI46_25080 0.66 -0.4
5,355,697 - IAI46_25080 0.66 +0.2
5,355,697 - IAI46_25080 0.66 -0.7
5,355,697 - IAI46_25080 0.66 +0.4
5,355,697 - IAI46_25080 0.66 -0.9
5,355,698 + IAI46_25080 0.66 -0.3
5,355,699 - IAI46_25080 0.66 -0.1
5,355,699 - IAI46_25080 0.66 +0.3
5,355,763 - IAI46_25080 0.70 +0.4
5,355,883 + IAI46_25080 0.76 +0.8
5,355,900 + IAI46_25080 0.77 -0.1
5,355,900 + IAI46_25080 0.77 +0.5
5,355,902 + IAI46_25080 0.77 +0.5
5,355,902 + IAI46_25080 0.77 -0.8
5,355,903 - IAI46_25080 0.77 +0.1
5,355,903 - IAI46_25080 0.77 -0.8
5,355,903 - IAI46_25080 0.77 -0.2
5,355,940 + IAI46_25080 0.79 +0.1
5,355,986 + IAI46_25080 0.82 -0.2
5,356,032 + IAI46_25080 0.84 +0.6
5,356,047 + IAI46_25080 0.85 +0.4
5,356,047 + IAI46_25080 0.85 +0.2
5,356,048 - IAI46_25080 0.85 -0.2
5,356,048 - IAI46_25080 0.85 +0.1
5,356,048 - IAI46_25080 0.85 -0.1
5,356,050 + IAI46_25080 0.85 +0.0
5,356,050 + IAI46_25080 0.85 -0.5
5,356,050 + IAI46_25080 0.85 -0.0
5,356,051 - IAI46_25080 0.85 -2.1
5,356,098 + IAI46_25080 0.88 +0.6
5,356,115 + IAI46_25080 0.89 +0.6
5,356,115 + IAI46_25080 0.89 +0.6
5,356,115 + IAI46_25080 0.89 +1.1
5,356,115 + IAI46_25080 0.89 +0.1
5,356,115 + IAI46_25080 0.89 -0.2
5,356,116 - IAI46_25080 0.89 +0.6
5,356,116 - IAI46_25080 0.89 -0.3
5,356,116 - IAI46_25080 0.89 +0.3
5,356,116 - IAI46_25080 0.89 +0.2
5,356,116 - IAI46_25080 0.89 +0.1
5,356,116 - IAI46_25080 0.89 -0.0
5,356,116 - IAI46_25080 0.89 -0.3
5,356,116 - IAI46_25080 0.89 +0.4
5,356,124 + IAI46_25080 0.89 -0.2
5,356,124 + IAI46_25080 0.89 -0.6
5,356,125 - IAI46_25080 0.89 +0.6
5,356,125 - IAI46_25080 0.89 -0.2
5,356,236 + +0.6
5,356,236 + -0.4
5,356,236 + +0.3
5,356,237 - -0.7
5,356,237 - -0.9
5,356,239 - +0.1
5,356,311 + +0.3
5,356,311 + -0.5
5,356,311 + -0.5
5,356,311 + +0.4
5,356,312 - +0.6
5,356,326 + -0.8
5,356,326 + +0.7
5,356,327 - -0.1
5,356,340 - -0.3
5,356,342 + -0.1
5,356,343 - -0.2
5,356,382 - -0.1
5,356,390 + -0.0
5,356,391 - -0.1
5,356,391 - +0.9
5,356,391 - +0.1
5,356,423 + +0.6
5,356,423 + -0.5
5,356,423 + -0.1
5,356,424 - -0.5
5,356,435 - +0.3
5,356,435 - -0.7
5,356,435 - -0.7
5,356,435 - -0.0
5,356,437 - -0.5
5,356,447 + +0.5
5,356,448 - -0.6
5,356,448 - -0.1
5,356,453 + +0.6
5,356,454 - +0.3
5,356,454 - +0.1
5,356,454 - +1.7
5,356,454 - -0.1
5,356,455 + -0.1
5,356,455 + -0.1
5,356,456 - +0.0
5,356,456 - -1.1
5,356,531 + -0.1
5,356,532 - -0.5
5,356,533 + -0.7
5,356,534 - +0.3
5,356,568 - -0.0
5,356,584 + +0.8
5,356,585 - +0.4
5,356,606 + +0.3
5,356,606 + +0.6
5,356,607 - -0.4
5,356,607 - +0.6
5,356,676 + +0.5
5,356,676 + +0.5
5,356,786 - IAI46_25085 0.12 -0.8
5,356,821 - IAI46_25085 0.14 -0.5
5,356,821 - IAI46_25085 0.14 -0.4
5,356,821 - IAI46_25085 0.14 +0.5
5,357,079 + IAI46_25085 0.31 +0.5
5,357,111 + IAI46_25085 0.33 +0.2
5,357,111 + IAI46_25085 0.33 +0.4
5,357,112 - IAI46_25085 0.33 +0.3
5,357,112 - IAI46_25085 0.33 -0.2
5,357,127 + IAI46_25085 0.34 +0.2
5,357,127 + IAI46_25085 0.34 +1.1
5,357,127 + IAI46_25085 0.34 -0.2
5,357,128 - IAI46_25085 0.34 +0.4
5,357,128 - IAI46_25085 0.34 -0.4
5,357,128 - IAI46_25085 0.34 -1.8
5,357,243 + IAI46_25085 0.42 -0.1
5,357,243 + IAI46_25085 0.42 +0.3
5,357,243 + IAI46_25085 0.42 +0.1
5,357,243 + IAI46_25085 0.42 +0.2
5,357,243 + IAI46_25085 0.42 +0.5
5,357,244 - IAI46_25085 0.42 -0.6
5,357,244 - IAI46_25085 0.42 +0.3
5,357,304 + IAI46_25085 0.46 -0.0
5,357,348 + IAI46_25085 0.49 -2.3
5,357,349 - IAI46_25085 0.49 +0.3
5,357,349 - IAI46_25085 0.49 +0.3
5,357,349 - IAI46_25085 0.49 +0.9
5,357,349 - IAI46_25085 0.49 +0.2
5,357,349 - IAI46_25085 0.49 -0.4
5,357,407 - IAI46_25085 0.53 +1.0
5,357,482 - IAI46_25085 0.58 +0.2
5,357,482 - IAI46_25085 0.58 +0.1
5,357,482 - IAI46_25085 0.58 +0.7
5,357,502 + IAI46_25085 0.59 +0.4
5,357,503 - IAI46_25085 0.59 -0.0
5,357,528 + IAI46_25085 0.61 -0.7
5,357,528 + IAI46_25085 0.61 -0.5
5,357,529 - IAI46_25085 0.61 +0.4
5,357,529 - IAI46_25085 0.61 +0.9
5,357,731 + IAI46_25085 0.74 -0.9
5,357,752 + IAI46_25085 0.76 -0.1
5,357,753 - IAI46_25085 0.76 -0.0
5,357,799 + IAI46_25085 0.79 +0.0
5,357,800 - IAI46_25085 0.79 -0.0
5,357,918 - IAI46_25085 0.87 +0.2
5,357,919 + IAI46_25085 0.87 +1.2
5,357,919 + IAI46_25085 0.87 -0.8
5,357,919 + IAI46_25085 0.87 +0.7
5,357,920 - IAI46_25085 0.87 +0.5
5,357,920 - IAI46_25085 0.87 -0.2
5,358,025 + +0.2
5,358,116 + +0.0
5,358,117 - +0.2
5,358,195 + -0.2
5,358,195 + +0.9
5,358,195 + -0.3
5,358,343 + IAI46_25090 0.15 +0.6
5,358,344 - IAI46_25090 0.15 +1.2
5,358,365 + IAI46_25090 0.17 -0.4
5,358,365 + IAI46_25090 0.17 -0.3
5,358,366 - IAI46_25090 0.17 -0.5
5,358,376 - IAI46_25090 0.17 -0.1
5,358,390 + IAI46_25090 0.18 +0.2
5,358,391 - IAI46_25090 0.18 +0.0
5,358,391 - IAI46_25090 0.18 -0.9
5,358,439 + IAI46_25090 0.22 -0.1
5,358,439 + IAI46_25090 0.22 +0.3
5,358,439 + IAI46_25090 0.22 -0.4
5,358,439 + IAI46_25090 0.22 +0.5
5,358,439 + IAI46_25090 0.22 +0.5
5,358,439 + IAI46_25090 0.22 +0.1
5,358,518 + IAI46_25090 0.27 +0.0
5,358,519 - IAI46_25090 0.27 +0.6
5,358,519 - IAI46_25090 0.27 -0.2
5,358,799 + IAI46_25090 0.46 -0.4
5,358,799 + IAI46_25090 0.46 +0.1
5,358,800 - IAI46_25090 0.46 +0.7
5,358,800 - IAI46_25090 0.46 +0.1
5,358,800 - IAI46_25090 0.46 -0.4
5,358,800 - IAI46_25090 0.46 -0.5
5,358,894 + IAI46_25090 0.53 +0.8
5,359,044 - IAI46_25090 0.63 +0.9
5,359,044 - IAI46_25090 0.63 +0.4

Or see this region's nucleotide sequence