Experiment: Cadmium acetate 40 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_24540 and IAI46_24545 are separated by 317 nucleotides IAI46_24545 and IAI46_24550 are separated by 77 nucleotides IAI46_24550 and IAI46_24555 are separated by 199 nucleotides
IAI46_24540: IAI46_24540 - cystathionine gamma-synthase, at 5,241,308 to 5,242,468
_24540
IAI46_24545: IAI46_24545 - met regulon transcriptional regulator MetJ, at 5,242,786 to 5,243,103
_24545
IAI46_24550: IAI46_24550 - 50S ribosomal protein L31, at 5,243,181 to 5,243,396
_24550
IAI46_24555: IAI46_24555 - primosomal protein N', at 5,243,596 to 5,245,791
_24555
Position (kb) 5242
5243
5244 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5241.787 kb on + strand, within IAI46_24540 at 5241.788 kb on - strand, within IAI46_24540 at 5241.823 kb on + strand, within IAI46_24540 at 5241.873 kb on + strand, within IAI46_24540 at 5241.874 kb on - strand, within IAI46_24540 at 5241.874 kb on - strand, within IAI46_24540 at 5242.120 kb on - strand, within IAI46_24540 at 5242.132 kb on + strand, within IAI46_24540 at 5242.168 kb on - strand, within IAI46_24540 at 5242.211 kb on + strand, within IAI46_24540 at 5242.212 kb on - strand, within IAI46_24540 at 5242.212 kb on - strand, within IAI46_24540 at 5242.332 kb on + strand, within IAI46_24540 at 5242.332 kb on + strand, within IAI46_24540 at 5242.369 kb on + strand at 5242.372 kb on - strand at 5242.410 kb on + strand at 5242.410 kb on + strand at 5242.410 kb on + strand at 5242.411 kb on - strand at 5242.411 kb on - strand at 5242.435 kb on + strand at 5242.460 kb on - strand at 5242.469 kb on - strand at 5242.469 kb on - strand at 5242.469 kb on - strand at 5242.469 kb on - strand at 5242.469 kb on - strand at 5242.508 kb on - strand at 5242.515 kb on - strand at 5242.540 kb on - strand at 5242.553 kb on + strand at 5242.554 kb on - strand at 5242.567 kb on + strand at 5242.567 kb on + strand at 5242.569 kb on + strand at 5242.569 kb on + strand at 5242.570 kb on - strand at 5242.587 kb on - strand at 5242.587 kb on - strand at 5242.589 kb on + strand at 5242.603 kb on - strand at 5242.603 kb on - strand at 5242.623 kb on + strand at 5242.624 kb on - strand at 5242.624 kb on - strand at 5242.657 kb on - strand at 5242.690 kb on + strand at 5242.692 kb on + strand at 5242.692 kb on + strand at 5242.693 kb on - strand at 5242.703 kb on + strand at 5242.703 kb on + strand at 5242.703 kb on + strand at 5242.703 kb on + strand at 5242.732 kb on + strand at 5242.732 kb on + strand at 5242.776 kb on - strand at 5242.807 kb on + strand at 5242.807 kb on + strand at 5242.807 kb on + strand at 5242.808 kb on - strand at 5242.808 kb on - strand at 5242.865 kb on + strand, within IAI46_24545 at 5243.101 kb on + strand at 5243.101 kb on + strand at 5243.128 kb on + strand at 5243.128 kb on + strand at 5243.128 kb on + strand at 5243.129 kb on - strand at 5243.129 kb on - strand at 5243.537 kb on + strand at 5243.537 kb on + strand at 5243.537 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cadmium acetate 40 uM, aerobic remove 5,241,787 + IAI46_24540 0.41 -0.5 5,241,788 - IAI46_24540 0.41 -0.7 5,241,823 + IAI46_24540 0.44 -0.2 5,241,873 + IAI46_24540 0.49 -0.4 5,241,874 - IAI46_24540 0.49 -0.5 5,241,874 - IAI46_24540 0.49 +0.3 5,242,120 - IAI46_24540 0.70 -0.0 5,242,132 + IAI46_24540 0.71 +0.4 5,242,168 - IAI46_24540 0.74 +2.2 5,242,211 + IAI46_24540 0.78 +0.6 5,242,212 - IAI46_24540 0.78 +0.3 5,242,212 - IAI46_24540 0.78 -0.0 5,242,332 + IAI46_24540 0.88 +0.0 5,242,332 + IAI46_24540 0.88 +0.5 5,242,369 + +0.4 5,242,372 - -0.3 5,242,410 + +0.9 5,242,410 + +1.4 5,242,410 + +0.5 5,242,411 - +0.4 5,242,411 - +0.8 5,242,435 + +0.3 5,242,460 - -0.2 5,242,469 - -0.1 5,242,469 - +0.4 5,242,469 - +0.1 5,242,469 - -0.8 5,242,469 - -1.4 5,242,508 - -0.0 5,242,515 - +0.4 5,242,540 - -0.1 5,242,553 + -0.1 5,242,554 - +0.0 5,242,567 + -0.0 5,242,567 + +0.2 5,242,569 + +0.8 5,242,569 + +0.4 5,242,570 - +2.5 5,242,587 - +0.1 5,242,587 - +0.2 5,242,589 + +0.4 5,242,603 - -0.5 5,242,603 - -0.2 5,242,623 + +0.9 5,242,624 - -0.5 5,242,624 - -0.5 5,242,657 - +0.1 5,242,690 + -0.7 5,242,692 + +0.2 5,242,692 + +0.7 5,242,693 - +0.3 5,242,703 + -0.6 5,242,703 + +0.4 5,242,703 + +0.1 5,242,703 + +0.5 5,242,732 + -0.0 5,242,732 + -0.9 5,242,776 - -1.7 5,242,807 + -1.3 5,242,807 + +0.3 5,242,807 + -1.8 5,242,808 - -1.2 5,242,808 - +0.1 5,242,865 + IAI46_24545 0.25 +1.2 5,243,101 + +0.9 5,243,101 + -1.0 5,243,128 + +0.1 5,243,128 + -0.4 5,243,128 + +0.7 5,243,129 - +0.4 5,243,129 - +0.4 5,243,537 + +0.3 5,243,537 + +0.3 5,243,537 + +0.2
Or see this region's nucleotide sequence