Strain Fitness in Serratia liquefaciens MT49 around IAI46_24385

Experiment: Cadmium acetate 40 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_24375 and IAI46_24380 are separated by 27 nucleotidesIAI46_24380 and IAI46_24385 are separated by 119 nucleotidesIAI46_24385 and IAI46_24390 are separated by 4 nucleotidesIAI46_24390 and IAI46_24395 overlap by 4 nucleotides IAI46_24375: IAI46_24375 - YifB family Mg chelatase-like AAA ATPase, at 5,204,219 to 5,205,742 _24375 IAI46_24380: IAI46_24380 - DUF413 domain-containing protein, at 5,205,770 to 5,206,108 _24380 IAI46_24385: IAI46_24385 - HTH-type transcriptional regulator HdfR, at 5,206,228 to 5,207,055 _24385 IAI46_24390: IAI46_24390 - sugar ABC transporter permease YjfF, at 5,207,060 to 5,208,052 _24390 IAI46_24395: IAI46_24395 - ABC transporter permease, at 5,208,049 to 5,209,050 _24395 Position (kb) 5206 5207 5208Strain fitness (log2 ratio) -2 -1 0 1at 5205.275 kb on + strand, within IAI46_24375at 5205.275 kb on + strand, within IAI46_24375at 5205.275 kb on + strand, within IAI46_24375at 5205.276 kb on - strand, within IAI46_24375at 5205.290 kb on - strand, within IAI46_24375at 5205.320 kb on + strand, within IAI46_24375at 5205.493 kb on + strand, within IAI46_24375at 5205.493 kb on + strand, within IAI46_24375at 5205.573 kb on + strand, within IAI46_24375at 5205.659 kb on - strandat 5205.665 kb on - strandat 5205.740 kb on + strandat 5205.740 kb on + strandat 5205.741 kb on - strandat 5205.743 kb on + strandat 5205.743 kb on + strandat 5205.743 kb on + strandat 5205.744 kb on - strandat 5205.744 kb on - strandat 5205.789 kb on + strandat 5205.789 kb on + strandat 5205.789 kb on + strandat 5205.818 kb on - strand, within IAI46_24380at 5205.833 kb on - strand, within IAI46_24380at 5205.878 kb on + strand, within IAI46_24380at 5206.004 kb on + strand, within IAI46_24380at 5206.005 kb on - strand, within IAI46_24380at 5206.005 kb on - strand, within IAI46_24380at 5206.005 kb on - strand, within IAI46_24380at 5206.059 kb on + strand, within IAI46_24380at 5206.060 kb on - strand, within IAI46_24380at 5206.066 kb on + strand, within IAI46_24380at 5206.100 kb on - strandat 5206.121 kb on + strandat 5206.121 kb on + strandat 5206.145 kb on + strandat 5206.157 kb on + strandat 5206.160 kb on + strandat 5206.160 kb on + strandat 5206.160 kb on + strandat 5206.160 kb on + strandat 5206.161 kb on - strandat 5206.161 kb on - strandat 5206.161 kb on - strandat 5206.164 kb on + strandat 5206.164 kb on + strandat 5206.165 kb on - strandat 5206.195 kb on - strandat 5206.201 kb on + strandat 5206.242 kb on - strandat 5206.266 kb on + strandat 5206.266 kb on + strandat 5206.266 kb on + strandat 5206.267 kb on - strandat 5206.267 kb on - strandat 5206.267 kb on - strandat 5206.303 kb on + strandat 5206.303 kb on + strandat 5206.304 kb on - strandat 5206.304 kb on - strandat 5206.304 kb on - strandat 5206.307 kb on + strandat 5206.307 kb on + strandat 5206.307 kb on + strandat 5206.308 kb on - strandat 5206.344 kb on - strand, within IAI46_24385at 5206.389 kb on + strand, within IAI46_24385at 5206.390 kb on - strand, within IAI46_24385at 5206.491 kb on + strand, within IAI46_24385at 5206.491 kb on + strand, within IAI46_24385at 5206.492 kb on - strand, within IAI46_24385at 5206.534 kb on + strand, within IAI46_24385at 5206.534 kb on + strand, within IAI46_24385at 5206.534 kb on + strand, within IAI46_24385at 5206.534 kb on + strand, within IAI46_24385at 5206.534 kb on + strand, within IAI46_24385at 5206.534 kb on + strand, within IAI46_24385at 5206.535 kb on - strand, within IAI46_24385at 5206.535 kb on - strand, within IAI46_24385at 5206.535 kb on - strand, within IAI46_24385at 5206.561 kb on + strand, within IAI46_24385at 5206.562 kb on - strand, within IAI46_24385at 5206.762 kb on + strand, within IAI46_24385at 5206.762 kb on + strand, within IAI46_24385at 5206.762 kb on + strand, within IAI46_24385at 5206.762 kb on + strand, within IAI46_24385at 5206.762 kb on + strand, within IAI46_24385at 5206.762 kb on + strand, within IAI46_24385at 5206.763 kb on - strand, within IAI46_24385at 5206.763 kb on - strand, within IAI46_24385at 5206.763 kb on - strand, within IAI46_24385at 5206.764 kb on + strand, within IAI46_24385at 5206.764 kb on + strand, within IAI46_24385at 5206.764 kb on + strand, within IAI46_24385at 5206.764 kb on + strand, within IAI46_24385at 5206.765 kb on - strand, within IAI46_24385at 5206.845 kb on + strand, within IAI46_24385at 5207.121 kb on - strandat 5207.140 kb on + strandat 5207.206 kb on + strand, within IAI46_24390at 5207.206 kb on + strand, within IAI46_24390at 5207.206 kb on + strand, within IAI46_24390at 5207.207 kb on - strand, within IAI46_24390at 5207.207 kb on - strand, within IAI46_24390at 5207.209 kb on + strand, within IAI46_24390at 5207.209 kb on + strand, within IAI46_24390at 5207.210 kb on - strand, within IAI46_24390at 5207.210 kb on - strand, within IAI46_24390at 5207.210 kb on - strand, within IAI46_24390at 5207.211 kb on + strand, within IAI46_24390at 5207.211 kb on + strand, within IAI46_24390at 5207.211 kb on + strand, within IAI46_24390at 5207.211 kb on + strand, within IAI46_24390at 5207.211 kb on + strand, within IAI46_24390at 5207.211 kb on + strand, within IAI46_24390at 5207.211 kb on + strand, within IAI46_24390at 5207.212 kb on - strand, within IAI46_24390at 5207.212 kb on - strand, within IAI46_24390at 5207.212 kb on - strand, within IAI46_24390at 5207.212 kb on - strand, within IAI46_24390at 5207.212 kb on - strand, within IAI46_24390at 5207.212 kb on - strand, within IAI46_24390at 5207.212 kb on - strand, within IAI46_24390at 5207.212 kb on - strand, within IAI46_24390at 5207.212 kb on - strand, within IAI46_24390at 5207.347 kb on - strand, within IAI46_24390at 5207.359 kb on + strand, within IAI46_24390at 5207.359 kb on + strand, within IAI46_24390at 5207.360 kb on - strand, within IAI46_24390at 5207.360 kb on - strand, within IAI46_24390at 5207.361 kb on + strand, within IAI46_24390at 5207.361 kb on + strand, within IAI46_24390at 5207.361 kb on + strand, within IAI46_24390at 5207.361 kb on + strand, within IAI46_24390at 5207.362 kb on - strand, within IAI46_24390at 5207.362 kb on - strand, within IAI46_24390at 5207.362 kb on - strand, within IAI46_24390at 5207.385 kb on - strand, within IAI46_24390at 5207.410 kb on + strand, within IAI46_24390at 5207.410 kb on + strand, within IAI46_24390at 5207.411 kb on - strand, within IAI46_24390at 5207.411 kb on - strand, within IAI46_24390at 5207.411 kb on - strand, within IAI46_24390at 5207.412 kb on + strand, within IAI46_24390at 5207.412 kb on + strand, within IAI46_24390at 5207.412 kb on + strand, within IAI46_24390at 5207.412 kb on + strand, within IAI46_24390at 5207.412 kb on + strand, within IAI46_24390at 5207.413 kb on - strand, within IAI46_24390at 5207.413 kb on - strand, within IAI46_24390at 5207.413 kb on - strand, within IAI46_24390at 5207.428 kb on + strand, within IAI46_24390at 5207.491 kb on + strand, within IAI46_24390at 5207.491 kb on + strand, within IAI46_24390at 5207.491 kb on + strand, within IAI46_24390at 5207.491 kb on + strand, within IAI46_24390at 5207.492 kb on - strand, within IAI46_24390at 5207.543 kb on + strand, within IAI46_24390at 5207.544 kb on - strand, within IAI46_24390at 5207.567 kb on - strand, within IAI46_24390at 5207.567 kb on - strand, within IAI46_24390at 5207.567 kb on - strand, within IAI46_24390at 5207.598 kb on + strand, within IAI46_24390at 5207.598 kb on + strand, within IAI46_24390at 5207.598 kb on + strand, within IAI46_24390at 5207.598 kb on + strand, within IAI46_24390at 5207.599 kb on - strand, within IAI46_24390at 5207.599 kb on - strand, within IAI46_24390at 5207.616 kb on + strand, within IAI46_24390at 5207.617 kb on - strand, within IAI46_24390at 5207.656 kb on + strand, within IAI46_24390at 5207.695 kb on + strand, within IAI46_24390at 5207.696 kb on - strand, within IAI46_24390at 5207.696 kb on - strand, within IAI46_24390at 5207.698 kb on + strand, within IAI46_24390at 5207.701 kb on + strand, within IAI46_24390at 5207.702 kb on - strand, within IAI46_24390at 5207.702 kb on - strand, within IAI46_24390at 5207.702 kb on - strand, within IAI46_24390at 5207.712 kb on - strand, within IAI46_24390at 5207.787 kb on + strand, within IAI46_24390at 5207.787 kb on + strand, within IAI46_24390at 5207.787 kb on + strand, within IAI46_24390at 5207.805 kb on + strand, within IAI46_24390at 5207.806 kb on - strand, within IAI46_24390at 5207.984 kb on - strandat 5207.984 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium acetate 40 uM, aerobic
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5,205,275 + IAI46_24375 0.69 +1.0
5,205,275 + IAI46_24375 0.69 -0.2
5,205,275 + IAI46_24375 0.69 +0.2
5,205,276 - IAI46_24375 0.69 -0.0
5,205,290 - IAI46_24375 0.70 -2.3
5,205,320 + IAI46_24375 0.72 -0.3
5,205,493 + IAI46_24375 0.84 +0.6
5,205,493 + IAI46_24375 0.84 -0.1
5,205,573 + IAI46_24375 0.89 -0.3
5,205,659 - +0.6
5,205,665 - -1.6
5,205,740 + +0.2
5,205,740 + -0.4
5,205,741 - +0.0
5,205,743 + -0.1
5,205,743 + +0.8
5,205,743 + -1.4
5,205,744 - -0.2
5,205,744 - +0.6
5,205,789 + +0.9
5,205,789 + -0.3
5,205,789 + +0.3
5,205,818 - IAI46_24380 0.14 +0.8
5,205,833 - IAI46_24380 0.19 -0.1
5,205,878 + IAI46_24380 0.32 +0.2
5,206,004 + IAI46_24380 0.69 +0.3
5,206,005 - IAI46_24380 0.69 -0.2
5,206,005 - IAI46_24380 0.69 -0.5
5,206,005 - IAI46_24380 0.69 +0.6
5,206,059 + IAI46_24380 0.85 -0.4
5,206,060 - IAI46_24380 0.86 -0.4
5,206,066 + IAI46_24380 0.87 -1.0
5,206,100 - -2.2
5,206,121 + -0.7
5,206,121 + -1.7
5,206,145 + +0.1
5,206,157 + -0.4
5,206,160 + +0.0
5,206,160 + -1.7
5,206,160 + +0.6
5,206,160 + -0.7
5,206,161 - +1.5
5,206,161 - -0.3
5,206,161 - -0.2
5,206,164 + -0.2
5,206,164 + -2.2
5,206,165 - +0.4
5,206,195 - -0.0
5,206,201 + -0.1
5,206,242 - +0.3
5,206,266 + -0.3
5,206,266 + -0.3
5,206,266 + -0.3
5,206,267 - -1.2
5,206,267 - -0.2
5,206,267 - +0.3
5,206,303 + -0.6
5,206,303 + -0.9
5,206,304 - -1.1
5,206,304 - +0.5
5,206,304 - +1.4
5,206,307 + -0.5
5,206,307 + +0.3
5,206,307 + -0.4
5,206,308 - +0.4
5,206,344 - IAI46_24385 0.14 +0.2
5,206,389 + IAI46_24385 0.19 -0.7
5,206,390 - IAI46_24385 0.20 +0.2
5,206,491 + IAI46_24385 0.32 -0.7
5,206,491 + IAI46_24385 0.32 -0.6
5,206,492 - IAI46_24385 0.32 -0.2
5,206,534 + IAI46_24385 0.37 -0.1
5,206,534 + IAI46_24385 0.37 -0.6
5,206,534 + IAI46_24385 0.37 +1.0
5,206,534 + IAI46_24385 0.37 -0.8
5,206,534 + IAI46_24385 0.37 +0.3
5,206,534 + IAI46_24385 0.37 +0.7
5,206,535 - IAI46_24385 0.37 -0.3
5,206,535 - IAI46_24385 0.37 -0.3
5,206,535 - IAI46_24385 0.37 -1.7
5,206,561 + IAI46_24385 0.40 +0.1
5,206,562 - IAI46_24385 0.40 +0.4
5,206,762 + IAI46_24385 0.64 -2.0
5,206,762 + IAI46_24385 0.64 +0.1
5,206,762 + IAI46_24385 0.64 -0.2
5,206,762 + IAI46_24385 0.64 +0.3
5,206,762 + IAI46_24385 0.64 -1.1
5,206,762 + IAI46_24385 0.64 -0.0
5,206,763 - IAI46_24385 0.65 -0.1
5,206,763 - IAI46_24385 0.65 +0.8
5,206,763 - IAI46_24385 0.65 -0.5
5,206,764 + IAI46_24385 0.65 -0.1
5,206,764 + IAI46_24385 0.65 +0.1
5,206,764 + IAI46_24385 0.65 -0.6
5,206,764 + IAI46_24385 0.65 +0.1
5,206,765 - IAI46_24385 0.65 -0.5
5,206,845 + IAI46_24385 0.75 -1.0
5,207,121 - -0.4
5,207,140 + -0.1
5,207,206 + IAI46_24390 0.15 -0.5
5,207,206 + IAI46_24390 0.15 -0.7
5,207,206 + IAI46_24390 0.15 +0.0
5,207,207 - IAI46_24390 0.15 +0.4
5,207,207 - IAI46_24390 0.15 +0.7
5,207,209 + IAI46_24390 0.15 -0.3
5,207,209 + IAI46_24390 0.15 +0.1
5,207,210 - IAI46_24390 0.15 -0.1
5,207,210 - IAI46_24390 0.15 +0.2
5,207,210 - IAI46_24390 0.15 -0.3
5,207,211 + IAI46_24390 0.15 +0.2
5,207,211 + IAI46_24390 0.15 +0.5
5,207,211 + IAI46_24390 0.15 +0.4
5,207,211 + IAI46_24390 0.15 +0.5
5,207,211 + IAI46_24390 0.15 -0.5
5,207,211 + IAI46_24390 0.15 -0.4
5,207,211 + IAI46_24390 0.15 -0.1
5,207,212 - IAI46_24390 0.15 +0.1
5,207,212 - IAI46_24390 0.15 +0.7
5,207,212 - IAI46_24390 0.15 +0.3
5,207,212 - IAI46_24390 0.15 -0.5
5,207,212 - IAI46_24390 0.15 +0.3
5,207,212 - IAI46_24390 0.15 -0.8
5,207,212 - IAI46_24390 0.15 -0.5
5,207,212 - IAI46_24390 0.15 -1.1
5,207,212 - IAI46_24390 0.15 -0.3
5,207,347 - IAI46_24390 0.29 -0.2
5,207,359 + IAI46_24390 0.30 +0.5
5,207,359 + IAI46_24390 0.30 +0.3
5,207,360 - IAI46_24390 0.30 -0.2
5,207,360 - IAI46_24390 0.30 -0.4
5,207,361 + IAI46_24390 0.30 -0.5
5,207,361 + IAI46_24390 0.30 +0.3
5,207,361 + IAI46_24390 0.30 +0.8
5,207,361 + IAI46_24390 0.30 -1.0
5,207,362 - IAI46_24390 0.30 +1.4
5,207,362 - IAI46_24390 0.30 +0.7
5,207,362 - IAI46_24390 0.30 +0.2
5,207,385 - IAI46_24390 0.33 +0.3
5,207,410 + IAI46_24390 0.35 +0.4
5,207,410 + IAI46_24390 0.35 +0.9
5,207,411 - IAI46_24390 0.35 +1.7
5,207,411 - IAI46_24390 0.35 -0.5
5,207,411 - IAI46_24390 0.35 -0.1
5,207,412 + IAI46_24390 0.35 +0.2
5,207,412 + IAI46_24390 0.35 -0.1
5,207,412 + IAI46_24390 0.35 +0.6
5,207,412 + IAI46_24390 0.35 +0.6
5,207,412 + IAI46_24390 0.35 +0.3
5,207,413 - IAI46_24390 0.36 +1.1
5,207,413 - IAI46_24390 0.36 +0.1
5,207,413 - IAI46_24390 0.36 +0.2
5,207,428 + IAI46_24390 0.37 +0.9
5,207,491 + IAI46_24390 0.43 -0.1
5,207,491 + IAI46_24390 0.43 +0.2
5,207,491 + IAI46_24390 0.43 +0.1
5,207,491 + IAI46_24390 0.43 +0.2
5,207,492 - IAI46_24390 0.44 +0.1
5,207,543 + IAI46_24390 0.49 +0.1
5,207,544 - IAI46_24390 0.49 +0.9
5,207,567 - IAI46_24390 0.51 +0.4
5,207,567 - IAI46_24390 0.51 +0.4
5,207,567 - IAI46_24390 0.51 +0.4
5,207,598 + IAI46_24390 0.54 -1.4
5,207,598 + IAI46_24390 0.54 +0.4
5,207,598 + IAI46_24390 0.54 +0.8
5,207,598 + IAI46_24390 0.54 +0.4
5,207,599 - IAI46_24390 0.54 -0.2
5,207,599 - IAI46_24390 0.54 -0.1
5,207,616 + IAI46_24390 0.56 -0.3
5,207,617 - IAI46_24390 0.56 -0.7
5,207,656 + IAI46_24390 0.60 -0.5
5,207,695 + IAI46_24390 0.64 +0.3
5,207,696 - IAI46_24390 0.64 -0.1
5,207,696 - IAI46_24390 0.64 -0.3
5,207,698 + IAI46_24390 0.64 +0.0
5,207,701 + IAI46_24390 0.65 -0.2
5,207,702 - IAI46_24390 0.65 +0.1
5,207,702 - IAI46_24390 0.65 +0.1
5,207,702 - IAI46_24390 0.65 +0.2
5,207,712 - IAI46_24390 0.66 -0.1
5,207,787 + IAI46_24390 0.73 +0.1
5,207,787 + IAI46_24390 0.73 -0.4
5,207,787 + IAI46_24390 0.73 -0.1
5,207,805 + IAI46_24390 0.75 +0.4
5,207,806 - IAI46_24390 0.75 -0.6
5,207,984 - -0.4
5,207,984 - +0.6

Or see this region's nucleotide sequence