Strain Fitness in Serratia liquefaciens MT49 around IAI46_23060

Experiment: Cadmium acetate 40 uM, aerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_23055 and IAI46_23060 overlap by 8 nucleotidesIAI46_23060 and IAI46_23065 are separated by 358 nucleotides IAI46_23055: IAI46_23055 - maltose/maltodextrin ABC transporter ATP-binding protein MalK, at 4,915,957 to 4,917,066 _23055 IAI46_23060: IAI46_23060 - hypothetical protein, at 4,917,059 to 4,918,030 _23060 IAI46_23065: IAI46_23065 - maltose/maltodextrin ABC transporter substrate-binding protein MalE, at 4,918,389 to 4,919,582 _23065 Position (kb) 4917 4918 4919Strain fitness (log2 ratio) -2 -1 0 1at 4916.161 kb on + strand, within IAI46_23055at 4916.161 kb on + strand, within IAI46_23055at 4916.161 kb on + strand, within IAI46_23055at 4916.161 kb on + strand, within IAI46_23055at 4916.161 kb on + strand, within IAI46_23055at 4916.161 kb on + strand, within IAI46_23055at 4916.161 kb on + strand, within IAI46_23055at 4916.162 kb on - strand, within IAI46_23055at 4916.162 kb on - strand, within IAI46_23055at 4916.162 kb on - strand, within IAI46_23055at 4916.396 kb on + strand, within IAI46_23055at 4916.402 kb on + strand, within IAI46_23055at 4916.402 kb on + strand, within IAI46_23055at 4916.402 kb on + strand, within IAI46_23055at 4916.402 kb on + strand, within IAI46_23055at 4916.403 kb on - strand, within IAI46_23055at 4916.403 kb on - strand, within IAI46_23055at 4916.403 kb on - strand, within IAI46_23055at 4916.502 kb on - strand, within IAI46_23055at 4916.502 kb on - strand, within IAI46_23055at 4916.502 kb on - strand, within IAI46_23055at 4916.628 kb on + strand, within IAI46_23055at 4916.817 kb on - strand, within IAI46_23055at 4916.990 kb on - strandat 4916.990 kb on - strandat 4917.037 kb on - strandat 4917.037 kb on - strandat 4917.038 kb on + strandat 4917.039 kb on - strandat 4917.071 kb on + strandat 4917.092 kb on - strandat 4917.212 kb on - strand, within IAI46_23060at 4917.214 kb on - strand, within IAI46_23060at 4917.259 kb on + strand, within IAI46_23060at 4917.266 kb on + strand, within IAI46_23060at 4917.358 kb on - strand, within IAI46_23060at 4917.433 kb on - strand, within IAI46_23060at 4917.536 kb on + strand, within IAI46_23060at 4917.536 kb on + strand, within IAI46_23060at 4917.537 kb on - strand, within IAI46_23060at 4917.616 kb on + strand, within IAI46_23060at 4917.616 kb on + strand, within IAI46_23060at 4917.617 kb on - strand, within IAI46_23060at 4917.617 kb on - strand, within IAI46_23060at 4917.725 kb on + strand, within IAI46_23060at 4917.725 kb on + strand, within IAI46_23060at 4917.768 kb on + strand, within IAI46_23060at 4918.060 kb on - strandat 4918.078 kb on - strandat 4918.086 kb on - strandat 4918.086 kb on - strandat 4918.101 kb on + strandat 4918.111 kb on + strandat 4918.247 kb on - strandat 4918.273 kb on + strandat 4918.331 kb on + strandat 4918.331 kb on + strandat 4918.331 kb on + strandat 4918.331 kb on + strandat 4918.332 kb on - strandat 4918.359 kb on + strandat 4918.359 kb on + strandat 4918.360 kb on - strandat 4918.360 kb on - strandat 4918.389 kb on - strandat 4918.518 kb on + strand, within IAI46_23065at 4918.518 kb on + strand, within IAI46_23065at 4918.519 kb on - strand, within IAI46_23065at 4918.519 kb on - strand, within IAI46_23065at 4918.519 kb on - strand, within IAI46_23065at 4918.519 kb on - strand, within IAI46_23065at 4918.609 kb on - strand, within IAI46_23065at 4918.764 kb on + strand, within IAI46_23065at 4918.818 kb on + strand, within IAI46_23065at 4918.818 kb on + strand, within IAI46_23065at 4918.819 kb on - strand, within IAI46_23065at 4918.819 kb on - strand, within IAI46_23065at 4918.932 kb on + strand, within IAI46_23065at 4918.933 kb on - strand, within IAI46_23065at 4918.933 kb on - strand, within IAI46_23065at 4918.933 kb on - strand, within IAI46_23065at 4918.968 kb on + strand, within IAI46_23065at 4918.968 kb on + strand, within IAI46_23065at 4918.969 kb on - strand, within IAI46_23065at 4918.980 kb on + strand, within IAI46_23065at 4918.996 kb on - strand, within IAI46_23065at 4918.996 kb on - strand, within IAI46_23065at 4918.996 kb on - strand, within IAI46_23065

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium acetate 40 uM, aerobic
remove
4,916,161 + IAI46_23055 0.18 -0.4
4,916,161 + IAI46_23055 0.18 -0.0
4,916,161 + IAI46_23055 0.18 -1.3
4,916,161 + IAI46_23055 0.18 -0.3
4,916,161 + IAI46_23055 0.18 +0.3
4,916,161 + IAI46_23055 0.18 +0.2
4,916,161 + IAI46_23055 0.18 -2.0
4,916,162 - IAI46_23055 0.18 +0.0
4,916,162 - IAI46_23055 0.18 -1.2
4,916,162 - IAI46_23055 0.18 +0.3
4,916,396 + IAI46_23055 0.40 +0.7
4,916,402 + IAI46_23055 0.40 -1.0
4,916,402 + IAI46_23055 0.40 +0.5
4,916,402 + IAI46_23055 0.40 +0.4
4,916,402 + IAI46_23055 0.40 -1.0
4,916,403 - IAI46_23055 0.40 -0.5
4,916,403 - IAI46_23055 0.40 +1.3
4,916,403 - IAI46_23055 0.40 +0.3
4,916,502 - IAI46_23055 0.49 +0.6
4,916,502 - IAI46_23055 0.49 +0.9
4,916,502 - IAI46_23055 0.49 +0.6
4,916,628 + IAI46_23055 0.60 -0.0
4,916,817 - IAI46_23055 0.77 -0.2
4,916,990 - -0.1
4,916,990 - +0.8
4,917,037 - -0.2
4,917,037 - -0.2
4,917,038 + +0.6
4,917,039 - +0.8
4,917,071 + -0.4
4,917,092 - +0.4
4,917,212 - IAI46_23060 0.16 -0.1
4,917,214 - IAI46_23060 0.16 +1.0
4,917,259 + IAI46_23060 0.21 -0.8
4,917,266 + IAI46_23060 0.21 -0.1
4,917,358 - IAI46_23060 0.31 -0.1
4,917,433 - IAI46_23060 0.38 -1.9
4,917,536 + IAI46_23060 0.49 +0.4
4,917,536 + IAI46_23060 0.49 +0.4
4,917,537 - IAI46_23060 0.49 -0.3
4,917,616 + IAI46_23060 0.57 -0.3
4,917,616 + IAI46_23060 0.57 -0.0
4,917,617 - IAI46_23060 0.57 +0.0
4,917,617 - IAI46_23060 0.57 -0.8
4,917,725 + IAI46_23060 0.69 +0.9
4,917,725 + IAI46_23060 0.69 -0.4
4,917,768 + IAI46_23060 0.73 +0.5
4,918,060 - -1.9
4,918,078 - -0.1
4,918,086 - -1.9
4,918,086 - +0.5
4,918,101 + +0.9
4,918,111 + +0.1
4,918,247 - -0.6
4,918,273 + +0.0
4,918,331 + +1.0
4,918,331 + +0.1
4,918,331 + -0.0
4,918,331 + +0.5
4,918,332 - +0.0
4,918,359 + -0.7
4,918,359 + -0.5
4,918,360 - -0.3
4,918,360 - +0.1
4,918,389 - -0.6
4,918,518 + IAI46_23065 0.11 +0.1
4,918,518 + IAI46_23065 0.11 +0.4
4,918,519 - IAI46_23065 0.11 +0.7
4,918,519 - IAI46_23065 0.11 -0.3
4,918,519 - IAI46_23065 0.11 +0.2
4,918,519 - IAI46_23065 0.11 +0.2
4,918,609 - IAI46_23065 0.18 -0.3
4,918,764 + IAI46_23065 0.31 -0.4
4,918,818 + IAI46_23065 0.36 -0.1
4,918,818 + IAI46_23065 0.36 +0.8
4,918,819 - IAI46_23065 0.36 -0.0
4,918,819 - IAI46_23065 0.36 +0.8
4,918,932 + IAI46_23065 0.45 -0.6
4,918,933 - IAI46_23065 0.46 -0.5
4,918,933 - IAI46_23065 0.46 +0.2
4,918,933 - IAI46_23065 0.46 +0.8
4,918,968 + IAI46_23065 0.48 -0.0
4,918,968 + IAI46_23065 0.48 +0.3
4,918,969 - IAI46_23065 0.49 +0.1
4,918,980 + IAI46_23065 0.49 +0.5
4,918,996 - IAI46_23065 0.51 -0.3
4,918,996 - IAI46_23065 0.51 -0.0
4,918,996 - IAI46_23065 0.51 +0.3

Or see this region's nucleotide sequence