Strain Fitness in Serratia liquefaciens MT49 around IAI46_22170

Experiment: Cadmium acetate 40 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_22165 and IAI46_22170 are separated by 128 nucleotidesIAI46_22170 and IAI46_22175 are separated by 14 nucleotides IAI46_22165: IAI46_22165 - 4-aminobutyrate--2-oxoglutarate transaminase, at 4,721,629 to 4,722,894 _22165 IAI46_22170: IAI46_22170 - PLP-dependent aminotransferase family protein, at 4,723,023 to 4,724,507 _22170 IAI46_22175: IAI46_22175 - ABC-F family ATP-binding cassette domain-containing protein, at 4,724,522 to 4,726,141 _22175 Position (kb) 4723 4724 4725Strain fitness (log2 ratio) -2 -1 0 1 2at 4722.129 kb on - strand, within IAI46_22165at 4722.129 kb on - strand, within IAI46_22165at 4722.129 kb on - strand, within IAI46_22165at 4722.129 kb on - strand, within IAI46_22165at 4722.234 kb on + strand, within IAI46_22165at 4722.331 kb on - strand, within IAI46_22165at 4722.432 kb on + strand, within IAI46_22165at 4722.433 kb on - strand, within IAI46_22165at 4722.435 kb on - strand, within IAI46_22165at 4722.470 kb on + strand, within IAI46_22165at 4722.470 kb on + strand, within IAI46_22165at 4722.470 kb on + strand, within IAI46_22165at 4722.470 kb on + strand, within IAI46_22165at 4722.471 kb on - strand, within IAI46_22165at 4722.588 kb on + strand, within IAI46_22165at 4722.589 kb on - strand, within IAI46_22165at 4722.589 kb on - strand, within IAI46_22165at 4722.641 kb on + strand, within IAI46_22165at 4722.665 kb on + strand, within IAI46_22165at 4722.666 kb on - strand, within IAI46_22165at 4722.666 kb on - strand, within IAI46_22165at 4723.001 kb on + strandat 4723.080 kb on - strandat 4723.088 kb on + strandat 4723.088 kb on + strandat 4723.098 kb on + strandat 4723.100 kb on + strandat 4723.204 kb on + strand, within IAI46_22170at 4723.204 kb on + strand, within IAI46_22170at 4723.239 kb on + strand, within IAI46_22170at 4723.239 kb on + strand, within IAI46_22170at 4723.240 kb on - strand, within IAI46_22170at 4723.300 kb on + strand, within IAI46_22170at 4723.300 kb on + strand, within IAI46_22170at 4723.419 kb on - strand, within IAI46_22170at 4723.459 kb on + strand, within IAI46_22170at 4723.481 kb on + strand, within IAI46_22170at 4723.515 kb on + strand, within IAI46_22170at 4723.515 kb on + strand, within IAI46_22170at 4723.516 kb on - strand, within IAI46_22170at 4723.543 kb on + strand, within IAI46_22170at 4723.543 kb on + strand, within IAI46_22170at 4723.543 kb on + strand, within IAI46_22170at 4723.573 kb on + strand, within IAI46_22170at 4723.574 kb on - strand, within IAI46_22170at 4723.585 kb on + strand, within IAI46_22170at 4723.586 kb on - strand, within IAI46_22170at 4723.637 kb on - strand, within IAI46_22170at 4723.662 kb on - strand, within IAI46_22170at 4723.739 kb on + strand, within IAI46_22170at 4723.740 kb on - strand, within IAI46_22170at 4723.740 kb on - strand, within IAI46_22170at 4723.740 kb on - strand, within IAI46_22170at 4723.791 kb on - strand, within IAI46_22170at 4723.923 kb on + strand, within IAI46_22170at 4723.924 kb on - strand, within IAI46_22170at 4723.998 kb on + strand, within IAI46_22170at 4723.998 kb on + strand, within IAI46_22170at 4723.998 kb on + strand, within IAI46_22170at 4723.998 kb on + strand, within IAI46_22170at 4723.998 kb on + strand, within IAI46_22170at 4723.998 kb on + strand, within IAI46_22170at 4723.998 kb on + strand, within IAI46_22170at 4723.998 kb on + strand, within IAI46_22170at 4723.998 kb on + strand, within IAI46_22170at 4723.999 kb on - strand, within IAI46_22170at 4723.999 kb on - strand, within IAI46_22170at 4723.999 kb on - strand, within IAI46_22170at 4724.047 kb on - strand, within IAI46_22170at 4724.103 kb on + strand, within IAI46_22170at 4724.148 kb on - strand, within IAI46_22170at 4724.174 kb on + strand, within IAI46_22170at 4724.196 kb on + strand, within IAI46_22170at 4724.229 kb on - strand, within IAI46_22170at 4724.229 kb on - strand, within IAI46_22170at 4724.246 kb on + strand, within IAI46_22170at 4724.357 kb on - strand, within IAI46_22170at 4724.379 kb on + strandat 4724.379 kb on + strandat 4724.379 kb on + strandat 4724.382 kb on + strandat 4724.382 kb on + strandat 4724.382 kb on + strandat 4724.382 kb on + strandat 4724.382 kb on + strandat 4724.382 kb on + strandat 4724.382 kb on + strandat 4724.382 kb on + strandat 4724.382 kb on + strandat 4724.383 kb on - strandat 4724.383 kb on - strandat 4724.505 kb on + strandat 4724.525 kb on + strandat 4724.526 kb on - strandat 4724.683 kb on + strandat 4724.684 kb on - strand, within IAI46_22175at 4724.807 kb on + strand, within IAI46_22175at 4724.839 kb on + strand, within IAI46_22175at 4724.839 kb on + strand, within IAI46_22175at 4724.925 kb on + strand, within IAI46_22175at 4724.926 kb on - strand, within IAI46_22175at 4725.079 kb on + strand, within IAI46_22175at 4725.079 kb on + strand, within IAI46_22175at 4725.183 kb on + strand, within IAI46_22175at 4725.184 kb on - strand, within IAI46_22175at 4725.299 kb on - strand, within IAI46_22175at 4725.307 kb on + strand, within IAI46_22175at 4725.462 kb on + strand, within IAI46_22175at 4725.462 kb on + strand, within IAI46_22175at 4725.462 kb on + strand, within IAI46_22175at 4725.463 kb on - strand, within IAI46_22175at 4725.463 kb on - strand, within IAI46_22175at 4725.474 kb on + strand, within IAI46_22175at 4725.474 kb on + strand, within IAI46_22175

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Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium acetate 40 uM, aerobic
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4,722,129 - IAI46_22165 0.39 +0.4
4,722,129 - IAI46_22165 0.39 +0.1
4,722,129 - IAI46_22165 0.39 -0.4
4,722,129 - IAI46_22165 0.39 +0.5
4,722,234 + IAI46_22165 0.48 +0.1
4,722,331 - IAI46_22165 0.55 +0.3
4,722,432 + IAI46_22165 0.63 +1.5
4,722,433 - IAI46_22165 0.64 -0.1
4,722,435 - IAI46_22165 0.64 +0.0
4,722,470 + IAI46_22165 0.66 -0.3
4,722,470 + IAI46_22165 0.66 +0.1
4,722,470 + IAI46_22165 0.66 +0.4
4,722,470 + IAI46_22165 0.66 -0.2
4,722,471 - IAI46_22165 0.67 +0.3
4,722,588 + IAI46_22165 0.76 -0.1
4,722,589 - IAI46_22165 0.76 -0.1
4,722,589 - IAI46_22165 0.76 +1.7
4,722,641 + IAI46_22165 0.80 +0.6
4,722,665 + IAI46_22165 0.82 -1.5
4,722,666 - IAI46_22165 0.82 +0.8
4,722,666 - IAI46_22165 0.82 -0.4
4,723,001 + +0.8
4,723,080 - -0.1
4,723,088 + -0.0
4,723,088 + +0.5
4,723,098 + -0.5
4,723,100 + +1.3
4,723,204 + IAI46_22170 0.12 -0.4
4,723,204 + IAI46_22170 0.12 +0.7
4,723,239 + IAI46_22170 0.15 -0.7
4,723,239 + IAI46_22170 0.15 +0.1
4,723,240 - IAI46_22170 0.15 +1.7
4,723,300 + IAI46_22170 0.19 -0.6
4,723,300 + IAI46_22170 0.19 +1.2
4,723,419 - IAI46_22170 0.27 -1.9
4,723,459 + IAI46_22170 0.29 -0.7
4,723,481 + IAI46_22170 0.31 -1.1
4,723,515 + IAI46_22170 0.33 +0.1
4,723,515 + IAI46_22170 0.33 -0.2
4,723,516 - IAI46_22170 0.33 +1.5
4,723,543 + IAI46_22170 0.35 -0.1
4,723,543 + IAI46_22170 0.35 +1.1
4,723,543 + IAI46_22170 0.35 -0.2
4,723,573 + IAI46_22170 0.37 -0.2
4,723,574 - IAI46_22170 0.37 +0.5
4,723,585 + IAI46_22170 0.38 +0.6
4,723,586 - IAI46_22170 0.38 -0.6
4,723,637 - IAI46_22170 0.41 +1.2
4,723,662 - IAI46_22170 0.43 -0.5
4,723,739 + IAI46_22170 0.48 -0.5
4,723,740 - IAI46_22170 0.48 +0.3
4,723,740 - IAI46_22170 0.48 +0.3
4,723,740 - IAI46_22170 0.48 -0.3
4,723,791 - IAI46_22170 0.52 -0.7
4,723,923 + IAI46_22170 0.61 +0.3
4,723,924 - IAI46_22170 0.61 +0.8
4,723,998 + IAI46_22170 0.66 -0.1
4,723,998 + IAI46_22170 0.66 -0.1
4,723,998 + IAI46_22170 0.66 +0.1
4,723,998 + IAI46_22170 0.66 +0.2
4,723,998 + IAI46_22170 0.66 +0.3
4,723,998 + IAI46_22170 0.66 -0.5
4,723,998 + IAI46_22170 0.66 +1.3
4,723,998 + IAI46_22170 0.66 +0.5
4,723,998 + IAI46_22170 0.66 -0.6
4,723,999 - IAI46_22170 0.66 -1.0
4,723,999 - IAI46_22170 0.66 +0.1
4,723,999 - IAI46_22170 0.66 -1.2
4,724,047 - IAI46_22170 0.69 -0.8
4,724,103 + IAI46_22170 0.73 +0.5
4,724,148 - IAI46_22170 0.76 -0.5
4,724,174 + IAI46_22170 0.78 +0.9
4,724,196 + IAI46_22170 0.79 +0.2
4,724,229 - IAI46_22170 0.81 +0.3
4,724,229 - IAI46_22170 0.81 -0.8
4,724,246 + IAI46_22170 0.82 +0.0
4,724,357 - IAI46_22170 0.90 +0.1
4,724,379 + +0.4
4,724,379 + -1.4
4,724,379 + -1.6
4,724,382 + -0.3
4,724,382 + +0.0
4,724,382 + +0.1
4,724,382 + +0.5
4,724,382 + -1.9
4,724,382 + -0.3
4,724,382 + -0.1
4,724,382 + +0.8
4,724,382 + -0.5
4,724,383 - +0.1
4,724,383 - +0.3
4,724,505 + -0.6
4,724,525 + +0.9
4,724,526 - +0.3
4,724,683 + +0.5
4,724,684 - IAI46_22175 0.10 +0.1
4,724,807 + IAI46_22175 0.18 +0.5
4,724,839 + IAI46_22175 0.20 +0.1
4,724,839 + IAI46_22175 0.20 +0.1
4,724,925 + IAI46_22175 0.25 -0.1
4,724,926 - IAI46_22175 0.25 -1.4
4,725,079 + IAI46_22175 0.34 +1.9
4,725,079 + IAI46_22175 0.34 +0.6
4,725,183 + IAI46_22175 0.41 +0.7
4,725,184 - IAI46_22175 0.41 +0.3
4,725,299 - IAI46_22175 0.48 -0.5
4,725,307 + IAI46_22175 0.48 +0.6
4,725,462 + IAI46_22175 0.58 -0.2
4,725,462 + IAI46_22175 0.58 +0.0
4,725,462 + IAI46_22175 0.58 +0.1
4,725,463 - IAI46_22175 0.58 +1.3
4,725,463 - IAI46_22175 0.58 +0.6
4,725,474 + IAI46_22175 0.59 -0.8
4,725,474 + IAI46_22175 0.59 +0.1

Or see this region's nucleotide sequence