Strain Fitness in Serratia liquefaciens MT49 around IAI46_21435

Experiment: Cadmium acetate 40 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_21420 and IAI46_21425 overlap by 4 nucleotidesIAI46_21425 and IAI46_21430 are separated by 17 nucleotidesIAI46_21430 and IAI46_21435 overlap by 8 nucleotidesIAI46_21435 and IAI46_21440 are separated by 37 nucleotidesIAI46_21440 and IAI46_21445 are separated by 100 nucleotides IAI46_21420: IAI46_21420 - YggT family protein, at 4,541,641 to 4,542,195 _21420 IAI46_21425: IAI46_21425 - YggU family protein, at 4,542,192 to 4,542,482 _21425 IAI46_21430: IAI46_21430 - XTP/dITP diphosphatase, at 4,542,500 to 4,543,093 _21430 IAI46_21435: IAI46_21435 - radical SAM family heme chaperone HemW, at 4,543,086 to 4,544,225 _21435 IAI46_21440: IAI46_21440 - DUF29 domain-containing protein, at 4,544,263 to 4,544,697 _21440 IAI46_21445: IAI46_21445 - DUF2884 domain-containing protein, at 4,544,798 to 4,545,514 _21445 Position (kb) 4543 4544 4545Strain fitness (log2 ratio) -2 -1 0 1at 4542.140 kb on - strandat 4542.151 kb on + strandat 4542.151 kb on + strandat 4542.151 kb on + strandat 4542.152 kb on - strandat 4542.152 kb on - strandat 4542.235 kb on + strand, within IAI46_21425at 4542.235 kb on + strand, within IAI46_21425at 4542.237 kb on + strand, within IAI46_21425at 4542.237 kb on + strand, within IAI46_21425at 4542.237 kb on + strand, within IAI46_21425at 4542.238 kb on - strand, within IAI46_21425at 4542.239 kb on + strand, within IAI46_21425at 4542.239 kb on + strand, within IAI46_21425at 4542.239 kb on + strand, within IAI46_21425at 4542.239 kb on + strand, within IAI46_21425at 4542.239 kb on + strand, within IAI46_21425at 4542.239 kb on + strand, within IAI46_21425at 4542.240 kb on - strand, within IAI46_21425at 4542.294 kb on - strand, within IAI46_21425at 4542.394 kb on + strand, within IAI46_21425at 4542.395 kb on - strand, within IAI46_21425at 4542.427 kb on + strand, within IAI46_21425at 4542.427 kb on + strand, within IAI46_21425at 4542.428 kb on - strand, within IAI46_21425at 4542.437 kb on + strand, within IAI46_21425at 4542.438 kb on - strand, within IAI46_21425at 4542.438 kb on - strand, within IAI46_21425at 4542.438 kb on - strand, within IAI46_21425at 4542.492 kb on + strandat 4542.493 kb on - strandat 4542.749 kb on + strand, within IAI46_21430at 4542.749 kb on + strand, within IAI46_21430at 4542.771 kb on + strand, within IAI46_21430at 4542.869 kb on + strand, within IAI46_21430at 4542.869 kb on + strand, within IAI46_21430at 4542.869 kb on + strand, within IAI46_21430at 4542.869 kb on + strand, within IAI46_21430at 4542.869 kb on + strand, within IAI46_21430at 4542.869 kb on + strand, within IAI46_21430at 4542.869 kb on + strand, within IAI46_21430at 4542.870 kb on - strand, within IAI46_21430at 4542.870 kb on - strand, within IAI46_21430at 4542.871 kb on + strand, within IAI46_21430at 4542.871 kb on + strand, within IAI46_21430at 4542.974 kb on - strand, within IAI46_21430at 4542.980 kb on + strand, within IAI46_21430at 4542.980 kb on + strand, within IAI46_21430at 4542.981 kb on - strand, within IAI46_21430at 4542.981 kb on - strand, within IAI46_21430at 4543.091 kb on + strandat 4543.091 kb on + strandat 4543.113 kb on + strandat 4543.121 kb on + strandat 4543.121 kb on + strandat 4543.122 kb on - strandat 4543.122 kb on - strandat 4543.200 kb on + strand, within IAI46_21435at 4543.200 kb on + strand, within IAI46_21435at 4543.201 kb on - strand, within IAI46_21435at 4543.201 kb on - strand, within IAI46_21435at 4543.274 kb on + strand, within IAI46_21435at 4543.666 kb on - strand, within IAI46_21435at 4543.667 kb on + strand, within IAI46_21435at 4543.807 kb on - strand, within IAI46_21435at 4543.835 kb on + strand, within IAI46_21435at 4543.836 kb on - strand, within IAI46_21435at 4543.836 kb on - strand, within IAI46_21435at 4543.845 kb on + strand, within IAI46_21435at 4543.845 kb on + strand, within IAI46_21435at 4543.956 kb on - strand, within IAI46_21435at 4543.956 kb on - strand, within IAI46_21435at 4543.968 kb on + strand, within IAI46_21435at 4543.968 kb on + strand, within IAI46_21435at 4543.968 kb on + strand, within IAI46_21435at 4543.968 kb on + strand, within IAI46_21435at 4543.969 kb on - strand, within IAI46_21435at 4543.969 kb on - strand, within IAI46_21435at 4543.969 kb on - strand, within IAI46_21435at 4543.969 kb on - strand, within IAI46_21435at 4543.971 kb on - strand, within IAI46_21435at 4544.073 kb on + strand, within IAI46_21435at 4544.074 kb on - strand, within IAI46_21435at 4544.133 kb on + strandat 4544.134 kb on - strandat 4544.198 kb on - strandat 4544.310 kb on + strand, within IAI46_21440at 4544.374 kb on + strand, within IAI46_21440at 4544.374 kb on + strand, within IAI46_21440at 4544.374 kb on + strand, within IAI46_21440at 4544.375 kb on - strand, within IAI46_21440at 4544.437 kb on - strand, within IAI46_21440at 4544.438 kb on + strand, within IAI46_21440at 4544.438 kb on + strand, within IAI46_21440at 4544.439 kb on - strand, within IAI46_21440at 4544.451 kb on + strand, within IAI46_21440at 4544.452 kb on - strand, within IAI46_21440at 4544.452 kb on - strand, within IAI46_21440at 4544.524 kb on + strand, within IAI46_21440at 4544.524 kb on + strand, within IAI46_21440at 4544.524 kb on + strand, within IAI46_21440at 4544.525 kb on - strand, within IAI46_21440at 4544.525 kb on - strand, within IAI46_21440at 4544.527 kb on + strand, within IAI46_21440at 4544.527 kb on + strand, within IAI46_21440at 4544.527 kb on + strand, within IAI46_21440at 4544.528 kb on - strand, within IAI46_21440at 4544.528 kb on - strand, within IAI46_21440at 4544.528 kb on - strand, within IAI46_21440at 4544.689 kb on - strandat 4544.732 kb on - strandat 4544.752 kb on + strandat 4544.752 kb on + strandat 4544.752 kb on + strandat 4544.752 kb on + strandat 4544.799 kb on + strandat 4544.799 kb on + strandat 4545.017 kb on + strand, within IAI46_21445at 4545.043 kb on + strand, within IAI46_21445at 4545.044 kb on - strand, within IAI46_21445at 4545.044 kb on - strand, within IAI46_21445at 4545.136 kb on + strand, within IAI46_21445at 4545.137 kb on - strand, within IAI46_21445

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Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium acetate 40 uM, aerobic
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4,542,140 - +0.4
4,542,151 + +0.1
4,542,151 + +0.4
4,542,151 + -0.4
4,542,152 - -0.9
4,542,152 - -0.8
4,542,235 + IAI46_21425 0.15 +0.1
4,542,235 + IAI46_21425 0.15 +1.0
4,542,237 + IAI46_21425 0.15 +1.0
4,542,237 + IAI46_21425 0.15 -0.6
4,542,237 + IAI46_21425 0.15 -0.3
4,542,238 - IAI46_21425 0.16 -0.5
4,542,239 + IAI46_21425 0.16 +1.2
4,542,239 + IAI46_21425 0.16 +0.4
4,542,239 + IAI46_21425 0.16 +0.6
4,542,239 + IAI46_21425 0.16 -0.1
4,542,239 + IAI46_21425 0.16 -0.4
4,542,239 + IAI46_21425 0.16 +0.1
4,542,240 - IAI46_21425 0.16 +0.4
4,542,294 - IAI46_21425 0.35 -0.5
4,542,394 + IAI46_21425 0.69 +0.3
4,542,395 - IAI46_21425 0.70 +0.1
4,542,427 + IAI46_21425 0.81 +0.2
4,542,427 + IAI46_21425 0.81 -0.2
4,542,428 - IAI46_21425 0.81 -0.2
4,542,437 + IAI46_21425 0.84 +0.3
4,542,438 - IAI46_21425 0.85 +0.3
4,542,438 - IAI46_21425 0.85 +0.4
4,542,438 - IAI46_21425 0.85 -0.1
4,542,492 + +0.9
4,542,493 - -0.8
4,542,749 + IAI46_21430 0.42 -0.1
4,542,749 + IAI46_21430 0.42 +1.4
4,542,771 + IAI46_21430 0.46 -0.5
4,542,869 + IAI46_21430 0.62 -0.2
4,542,869 + IAI46_21430 0.62 -0.9
4,542,869 + IAI46_21430 0.62 -0.7
4,542,869 + IAI46_21430 0.62 +0.4
4,542,869 + IAI46_21430 0.62 -0.4
4,542,869 + IAI46_21430 0.62 +0.1
4,542,869 + IAI46_21430 0.62 +0.0
4,542,870 - IAI46_21430 0.62 -0.3
4,542,870 - IAI46_21430 0.62 -0.4
4,542,871 + IAI46_21430 0.62 -0.6
4,542,871 + IAI46_21430 0.62 -0.5
4,542,974 - IAI46_21430 0.80 -1.3
4,542,980 + IAI46_21430 0.81 -1.8
4,542,980 + IAI46_21430 0.81 +0.1
4,542,981 - IAI46_21430 0.81 +0.2
4,542,981 - IAI46_21430 0.81 +0.3
4,543,091 + -0.8
4,543,091 + +0.2
4,543,113 + -1.3
4,543,121 + +1.0
4,543,121 + +1.6
4,543,122 - -0.2
4,543,122 - -0.0
4,543,200 + IAI46_21435 0.10 -0.1
4,543,200 + IAI46_21435 0.10 -0.3
4,543,201 - IAI46_21435 0.10 -0.6
4,543,201 - IAI46_21435 0.10 -0.1
4,543,274 + IAI46_21435 0.16 +0.5
4,543,666 - IAI46_21435 0.51 +0.0
4,543,667 + IAI46_21435 0.51 +0.2
4,543,807 - IAI46_21435 0.63 +0.4
4,543,835 + IAI46_21435 0.66 +0.2
4,543,836 - IAI46_21435 0.66 -0.2
4,543,836 - IAI46_21435 0.66 -0.5
4,543,845 + IAI46_21435 0.67 -0.3
4,543,845 + IAI46_21435 0.67 +0.4
4,543,956 - IAI46_21435 0.76 -0.5
4,543,956 - IAI46_21435 0.76 -0.9
4,543,968 + IAI46_21435 0.77 +0.4
4,543,968 + IAI46_21435 0.77 -0.2
4,543,968 + IAI46_21435 0.77 -0.2
4,543,968 + IAI46_21435 0.77 +0.2
4,543,969 - IAI46_21435 0.77 +1.3
4,543,969 - IAI46_21435 0.77 +0.6
4,543,969 - IAI46_21435 0.77 -0.5
4,543,969 - IAI46_21435 0.77 +0.0
4,543,971 - IAI46_21435 0.78 -0.1
4,544,073 + IAI46_21435 0.87 +0.2
4,544,074 - IAI46_21435 0.87 -0.4
4,544,133 + -1.1
4,544,134 - +0.7
4,544,198 - +0.4
4,544,310 + IAI46_21440 0.11 -0.1
4,544,374 + IAI46_21440 0.26 -0.6
4,544,374 + IAI46_21440 0.26 -0.2
4,544,374 + IAI46_21440 0.26 +0.5
4,544,375 - IAI46_21440 0.26 +0.8
4,544,437 - IAI46_21440 0.40 +0.0
4,544,438 + IAI46_21440 0.40 -0.0
4,544,438 + IAI46_21440 0.40 +0.2
4,544,439 - IAI46_21440 0.40 +0.0
4,544,451 + IAI46_21440 0.43 -0.1
4,544,452 - IAI46_21440 0.43 -0.1
4,544,452 - IAI46_21440 0.43 -0.6
4,544,524 + IAI46_21440 0.60 -0.1
4,544,524 + IAI46_21440 0.60 -0.2
4,544,524 + IAI46_21440 0.60 -0.8
4,544,525 - IAI46_21440 0.60 -1.7
4,544,525 - IAI46_21440 0.60 -0.0
4,544,527 + IAI46_21440 0.61 -0.1
4,544,527 + IAI46_21440 0.61 -0.6
4,544,527 + IAI46_21440 0.61 +0.8
4,544,528 - IAI46_21440 0.61 +1.0
4,544,528 - IAI46_21440 0.61 +0.2
4,544,528 - IAI46_21440 0.61 +0.2
4,544,689 - +0.6
4,544,732 - +0.2
4,544,752 + -0.3
4,544,752 + -0.1
4,544,752 + +0.4
4,544,752 + +0.4
4,544,799 + +0.4
4,544,799 + +0.6
4,545,017 + IAI46_21445 0.31 -0.1
4,545,043 + IAI46_21445 0.34 +0.1
4,545,044 - IAI46_21445 0.34 +0.9
4,545,044 - IAI46_21445 0.34 +1.2
4,545,136 + IAI46_21445 0.47 -0.2
4,545,137 - IAI46_21445 0.47 -0.2

Or see this region's nucleotide sequence