Strain Fitness in Serratia liquefaciens MT49 around IAI46_20200

Experiment: Cadmium acetate 40 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_20195 and IAI46_20200 are separated by 3 nucleotidesIAI46_20200 and IAI46_20205 are separated by 3 nucleotidesIAI46_20205 and IAI46_20210 are separated by 160 nucleotides IAI46_20195: IAI46_20195 - lipid-A-disaccharide synthase, at 4,260,880 to 4,262,028 _20195 IAI46_20200: IAI46_20200 - acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase, at 4,262,032 to 4,262,820 _20200 IAI46_20205: IAI46_20205 - 3-hydroxyacyl-ACP dehydratase FabZ, at 4,262,824 to 4,263,279 _20205 IAI46_20210: IAI46_20210 - UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase, at 4,263,440 to 4,264,462 _20210 Position (kb) 4262 4263Strain fitness (log2 ratio) -1 0 1 2at 4262.029 kb on - strandat 4263.416 kb on - strandat 4263.442 kb on - strandat 4263.442 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium acetate 40 uM, aerobic
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4,262,029 - +0.2
4,263,416 - +2.0
4,263,442 - +1.0
4,263,442 - +0.5

Or see this region's nucleotide sequence