Strain Fitness in Serratia liquefaciens MT49 around IAI46_17765

Experiment: Cadmium acetate 40 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_17755 and IAI46_17760 are separated by 66 nucleotidesIAI46_17760 and IAI46_17765 are separated by 90 nucleotidesIAI46_17765 and IAI46_17770 are separated by 259 nucleotidesIAI46_17770 and IAI46_17775 are separated by 104 nucleotides IAI46_17755: IAI46_17755 - phosphate acetyltransferase, at 3,743,129 to 3,745,291 _17755 IAI46_17760: IAI46_17760 - NUDIX hydrolase YfcD, at 3,745,358 to 3,745,915 _17760 IAI46_17765: IAI46_17765 - phosphodiesterase, at 3,746,006 to 3,746,557 _17765 IAI46_17770: IAI46_17770 - GSH-dependent disulfide bond oxidoreductase, at 3,746,817 to 3,747,446 _17770 IAI46_17775: IAI46_17775 - dihydroneopterin triphosphate 2'-epimerase, at 3,747,551 to 3,747,922 _17775 Position (kb) 3746 3747Strain fitness (log2 ratio) -1 0 1 2at 3745.118 kb on + strandat 3745.229 kb on + strandat 3745.229 kb on + strandat 3745.230 kb on - strandat 3745.230 kb on - strandat 3745.231 kb on + strandat 3745.293 kb on - strandat 3745.304 kb on + strandat 3745.305 kb on - strandat 3745.396 kb on - strandat 3745.396 kb on - strandat 3745.789 kb on + strand, within IAI46_17760at 3745.791 kb on + strand, within IAI46_17760at 3745.791 kb on + strand, within IAI46_17760at 3745.791 kb on + strand, within IAI46_17760at 3745.792 kb on - strand, within IAI46_17760at 3745.792 kb on - strand, within IAI46_17760at 3745.792 kb on - strand, within IAI46_17760at 3745.792 kb on - strand, within IAI46_17760at 3745.792 kb on - strand, within IAI46_17760at 3745.792 kb on - strand, within IAI46_17760at 3745.795 kb on + strand, within IAI46_17760at 3745.795 kb on + strand, within IAI46_17760at 3745.796 kb on - strand, within IAI46_17760at 3745.796 kb on - strand, within IAI46_17760at 3745.888 kb on + strandat 3745.931 kb on - strandat 3746.000 kb on + strandat 3746.001 kb on - strandat 3746.001 kb on - strandat 3746.003 kb on - strandat 3746.016 kb on - strandat 3746.064 kb on - strand, within IAI46_17765at 3746.064 kb on - strand, within IAI46_17765at 3746.082 kb on - strand, within IAI46_17765at 3746.172 kb on - strand, within IAI46_17765at 3746.188 kb on - strand, within IAI46_17765at 3746.236 kb on - strand, within IAI46_17765at 3746.276 kb on + strand, within IAI46_17765at 3746.276 kb on + strand, within IAI46_17765at 3746.531 kb on + strandat 3746.531 kb on + strandat 3746.531 kb on + strandat 3746.557 kb on + strandat 3746.557 kb on + strandat 3746.558 kb on - strandat 3746.580 kb on + strandat 3746.665 kb on + strandat 3746.665 kb on + strandat 3746.665 kb on + strandat 3746.666 kb on - strandat 3746.671 kb on + strandat 3746.671 kb on + strandat 3746.671 kb on + strandat 3746.671 kb on + strandat 3746.693 kb on - strandat 3746.693 kb on - strandat 3746.693 kb on - strandat 3746.693 kb on - strandat 3746.706 kb on + strandat 3746.707 kb on - strandat 3746.714 kb on - strandat 3746.714 kb on - strandat 3746.714 kb on - strandat 3746.730 kb on + strandat 3746.731 kb on - strandat 3746.745 kb on + strandat 3746.745 kb on + strandat 3746.746 kb on - strandat 3746.746 kb on - strandat 3746.746 kb on - strandat 3746.747 kb on + strandat 3746.747 kb on + strandat 3746.748 kb on - strandat 3746.789 kb on + strandat 3746.829 kb on + strandat 3746.830 kb on - strandat 3746.841 kb on - strandat 3746.861 kb on + strandat 3746.862 kb on - strandat 3746.862 kb on - strandat 3746.862 kb on - strandat 3746.887 kb on + strand, within IAI46_17770at 3746.888 kb on - strand, within IAI46_17770at 3746.888 kb on - strand, within IAI46_17770at 3746.897 kb on + strand, within IAI46_17770at 3746.908 kb on + strand, within IAI46_17770at 3747.049 kb on - strand, within IAI46_17770at 3747.109 kb on + strand, within IAI46_17770at 3747.109 kb on + strand, within IAI46_17770at 3747.170 kb on + strand, within IAI46_17770at 3747.171 kb on - strand, within IAI46_17770at 3747.214 kb on - strand, within IAI46_17770at 3747.274 kb on - strand, within IAI46_17770at 3747.291 kb on + strand, within IAI46_17770at 3747.291 kb on + strand, within IAI46_17770at 3747.292 kb on - strand, within IAI46_17770at 3747.315 kb on + strand, within IAI46_17770at 3747.315 kb on + strand, within IAI46_17770at 3747.482 kb on - strandat 3747.501 kb on - strandat 3747.511 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium acetate 40 uM, aerobic
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3,745,118 + -0.7
3,745,229 + +0.4
3,745,229 + -1.0
3,745,230 - +0.5
3,745,230 - -0.4
3,745,231 + -0.2
3,745,293 - -0.5
3,745,304 + -0.5
3,745,305 - +0.1
3,745,396 - -0.0
3,745,396 - +0.8
3,745,789 + IAI46_17760 0.77 +0.0
3,745,791 + IAI46_17760 0.78 -0.3
3,745,791 + IAI46_17760 0.78 -0.1
3,745,791 + IAI46_17760 0.78 +0.2
3,745,792 - IAI46_17760 0.78 +0.4
3,745,792 - IAI46_17760 0.78 +0.8
3,745,792 - IAI46_17760 0.78 +0.3
3,745,792 - IAI46_17760 0.78 +1.8
3,745,792 - IAI46_17760 0.78 +0.5
3,745,792 - IAI46_17760 0.78 +0.8
3,745,795 + IAI46_17760 0.78 -1.7
3,745,795 + IAI46_17760 0.78 -0.7
3,745,796 - IAI46_17760 0.78 -0.4
3,745,796 - IAI46_17760 0.78 +0.4
3,745,888 + -0.6
3,745,931 - +0.2
3,746,000 + -0.4
3,746,001 - -0.8
3,746,001 - +0.0
3,746,003 - +0.6
3,746,016 - +0.8
3,746,064 - IAI46_17765 0.11 +0.5
3,746,064 - IAI46_17765 0.11 +0.7
3,746,082 - IAI46_17765 0.14 +0.4
3,746,172 - IAI46_17765 0.30 +0.3
3,746,188 - IAI46_17765 0.33 +0.5
3,746,236 - IAI46_17765 0.42 +0.7
3,746,276 + IAI46_17765 0.49 -0.6
3,746,276 + IAI46_17765 0.49 -0.3
3,746,531 + -0.2
3,746,531 + -0.2
3,746,531 + -0.3
3,746,557 + -0.9
3,746,557 + -0.0
3,746,558 - -0.1
3,746,580 + +0.6
3,746,665 + -0.1
3,746,665 + -0.4
3,746,665 + +0.3
3,746,666 - -0.2
3,746,671 + -0.0
3,746,671 + +0.7
3,746,671 + -0.4
3,746,671 + +0.2
3,746,693 - +0.3
3,746,693 - +0.6
3,746,693 - +1.0
3,746,693 - -0.8
3,746,706 + +0.5
3,746,707 - +0.2
3,746,714 - +0.0
3,746,714 - +0.5
3,746,714 - +0.1
3,746,730 + +0.3
3,746,731 - -0.2
3,746,745 + -0.8
3,746,745 + -0.1
3,746,746 - +1.4
3,746,746 - -0.8
3,746,746 - -1.3
3,746,747 + +0.1
3,746,747 + -0.6
3,746,748 - +0.8
3,746,789 + +0.5
3,746,829 + +0.2
3,746,830 - -0.1
3,746,841 - +0.5
3,746,861 + +0.3
3,746,862 - +0.4
3,746,862 - +0.8
3,746,862 - +0.5
3,746,887 + IAI46_17770 0.11 +1.4
3,746,888 - IAI46_17770 0.11 +0.5
3,746,888 - IAI46_17770 0.11 +0.3
3,746,897 + IAI46_17770 0.13 -0.3
3,746,908 + IAI46_17770 0.14 -0.7
3,747,049 - IAI46_17770 0.37 +0.1
3,747,109 + IAI46_17770 0.46 +0.1
3,747,109 + IAI46_17770 0.46 -0.0
3,747,170 + IAI46_17770 0.56 +0.6
3,747,171 - IAI46_17770 0.56 -0.1
3,747,214 - IAI46_17770 0.63 +0.7
3,747,274 - IAI46_17770 0.73 +0.4
3,747,291 + IAI46_17770 0.75 +0.5
3,747,291 + IAI46_17770 0.75 +1.6
3,747,292 - IAI46_17770 0.75 -0.6
3,747,315 + IAI46_17770 0.79 +0.6
3,747,315 + IAI46_17770 0.79 +0.3
3,747,482 - +0.6
3,747,501 - +1.2
3,747,511 + +0.3

Or see this region's nucleotide sequence