Strain Fitness in Serratia liquefaciens MT49 around IAI46_17460

Experiment: Cadmium acetate 40 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_17455 and IAI46_17460 are separated by 164 nucleotidesIAI46_17460 and IAI46_17465 are separated by 212 nucleotidesIAI46_17465 and IAI46_17470 are separated by 60 nucleotides IAI46_17455: IAI46_17455 - two-component system sensor histidine kinase RcsC, at 3,665,228 to 3,668,098 _17455 IAI46_17460: IAI46_17460 - DNA topoisomerase (ATP-hydrolyzing) subunit A, at 3,668,263 to 3,670,914 _17460 IAI46_17465: IAI46_17465 - bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG, at 3,671,127 to 3,671,852 _17465 IAI46_17470: IAI46_17470 - FadR family transcriptional regulator, at 3,671,913 to 3,672,641 _17470 Position (kb) 3668 3669 3670 3671Strain fitness (log2 ratio) -2 -1 0 1at 3667.267 kb on - strand, within IAI46_17455at 3667.406 kb on + strand, within IAI46_17455at 3667.406 kb on + strand, within IAI46_17455at 3667.407 kb on - strand, within IAI46_17455at 3667.407 kb on - strand, within IAI46_17455at 3667.407 kb on - strand, within IAI46_17455at 3667.466 kb on + strand, within IAI46_17455at 3667.467 kb on - strand, within IAI46_17455at 3667.470 kb on + strand, within IAI46_17455at 3667.471 kb on - strand, within IAI46_17455at 3667.471 kb on - strand, within IAI46_17455at 3667.471 kb on - strand, within IAI46_17455at 3667.477 kb on - strand, within IAI46_17455at 3667.516 kb on - strand, within IAI46_17455at 3667.516 kb on - strand, within IAI46_17455at 3667.532 kb on - strand, within IAI46_17455at 3667.558 kb on + strand, within IAI46_17455at 3667.559 kb on - strand, within IAI46_17455at 3667.559 kb on - strand, within IAI46_17455at 3667.677 kb on + strand, within IAI46_17455at 3667.678 kb on - strand, within IAI46_17455at 3667.744 kb on - strand, within IAI46_17455at 3667.744 kb on - strand, within IAI46_17455at 3667.751 kb on - strand, within IAI46_17455at 3667.753 kb on + strand, within IAI46_17455at 3667.754 kb on - strand, within IAI46_17455at 3667.944 kb on + strandat 3667.944 kb on + strandat 3667.981 kb on + strandat 3667.992 kb on + strandat 3667.992 kb on + strandat 3668.176 kb on + strandat 3668.177 kb on - strandat 3668.183 kb on + strandat 3668.183 kb on + strandat 3668.183 kb on + strandat 3668.201 kb on + strandat 3668.202 kb on - strandat 3668.223 kb on - strandat 3668.238 kb on - strandat 3668.257 kb on + strandat 3668.342 kb on - strandat 3668.368 kb on - strandat 3668.387 kb on - strandat 3670.973 kb on - strandat 3670.973 kb on - strandat 3670.973 kb on - strandat 3670.979 kb on - strandat 3670.997 kb on + strandat 3671.037 kb on + strandat 3671.037 kb on + strandat 3671.037 kb on + strandat 3671.037 kb on + strandat 3671.037 kb on + strandat 3671.037 kb on + strandat 3671.037 kb on + strandat 3671.037 kb on + strandat 3671.037 kb on + strandat 3671.038 kb on - strandat 3671.039 kb on + strandat 3671.039 kb on + strandat 3671.039 kb on + strandat 3671.039 kb on + strandat 3671.039 kb on + strandat 3671.039 kb on + strandat 3671.039 kb on + strandat 3671.039 kb on + strandat 3671.039 kb on + strandat 3671.040 kb on - strandat 3671.040 kb on - strandat 3671.040 kb on - strandat 3671.040 kb on - strandat 3671.040 kb on - strandat 3671.040 kb on - strandat 3671.040 kb on - strandat 3671.040 kb on - strandat 3671.040 kb on - strandat 3671.049 kb on - strandat 3671.088 kb on + strandat 3671.089 kb on - strandat 3671.089 kb on - strandat 3671.090 kb on + strandat 3671.834 kb on + strandat 3671.834 kb on + strandat 3671.875 kb on + strandat 3671.900 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium acetate 40 uM, aerobic
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3,667,267 - IAI46_17455 0.71 -0.6
3,667,406 + IAI46_17455 0.76 -0.2
3,667,406 + IAI46_17455 0.76 +0.0
3,667,407 - IAI46_17455 0.76 +0.3
3,667,407 - IAI46_17455 0.76 -0.3
3,667,407 - IAI46_17455 0.76 -0.3
3,667,466 + IAI46_17455 0.78 +0.5
3,667,467 - IAI46_17455 0.78 -2.0
3,667,470 + IAI46_17455 0.78 -1.6
3,667,471 - IAI46_17455 0.78 -0.7
3,667,471 - IAI46_17455 0.78 +0.8
3,667,471 - IAI46_17455 0.78 +0.1
3,667,477 - IAI46_17455 0.78 +0.7
3,667,516 - IAI46_17455 0.80 -0.5
3,667,516 - IAI46_17455 0.80 -1.2
3,667,532 - IAI46_17455 0.80 -1.4
3,667,558 + IAI46_17455 0.81 -0.1
3,667,559 - IAI46_17455 0.81 +0.5
3,667,559 - IAI46_17455 0.81 -1.7
3,667,677 + IAI46_17455 0.85 -1.0
3,667,678 - IAI46_17455 0.85 -1.2
3,667,744 - IAI46_17455 0.88 +0.0
3,667,744 - IAI46_17455 0.88 +0.4
3,667,751 - IAI46_17455 0.88 +0.5
3,667,753 + IAI46_17455 0.88 +0.1
3,667,754 - IAI46_17455 0.88 +0.7
3,667,944 + -1.0
3,667,944 + -1.0
3,667,981 + -0.6
3,667,992 + -1.3
3,667,992 + -0.3
3,668,176 + -0.3
3,668,177 - -0.8
3,668,183 + -0.3
3,668,183 + -2.0
3,668,183 + +0.1
3,668,201 + -0.3
3,668,202 - -0.6
3,668,223 - -0.2
3,668,238 - +0.7
3,668,257 + -0.6
3,668,342 - +0.4
3,668,368 - +0.0
3,668,387 - +0.4
3,670,973 - -0.2
3,670,973 - -1.0
3,670,973 - +0.2
3,670,979 - +1.0
3,670,997 + +0.2
3,671,037 + +1.3
3,671,037 + +1.0
3,671,037 + -0.3
3,671,037 + +0.3
3,671,037 + -0.6
3,671,037 + +0.3
3,671,037 + -1.2
3,671,037 + -0.2
3,671,037 + -0.3
3,671,038 - +1.0
3,671,039 + +0.6
3,671,039 + +0.3
3,671,039 + -0.5
3,671,039 + -1.4
3,671,039 + +0.2
3,671,039 + +0.2
3,671,039 + +1.1
3,671,039 + -1.2
3,671,039 + -0.3
3,671,040 - +0.6
3,671,040 - -0.3
3,671,040 - +0.2
3,671,040 - -2.3
3,671,040 - +0.5
3,671,040 - -0.2
3,671,040 - +0.8
3,671,040 - -0.4
3,671,040 - -0.4
3,671,049 - +0.5
3,671,088 + -0.0
3,671,089 - +0.8
3,671,089 - +0.4
3,671,090 + +0.8
3,671,834 + -1.4
3,671,834 + +0.4
3,671,875 + -0.3
3,671,900 + -0.3

Or see this region's nucleotide sequence