Strain Fitness in Serratia liquefaciens MT49 around IAI46_15845

Experiment: Cadmium acetate 40 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_15840 and IAI46_15845 overlap by 4 nucleotidesIAI46_15845 and IAI46_15850 overlap by 8 nucleotidesIAI46_15850 and IAI46_15855 overlap by 1 nucleotides IAI46_15840: IAI46_15840 - flagellar M-ring protein FliF, at 3,327,046 to 3,328,746 _15840 IAI46_15845: IAI46_15845 - flagellar motor switch protein FliG, at 3,328,743 to 3,329,735 _15845 IAI46_15850: IAI46_15850 - flagellar assembly protein FliH, at 3,329,728 to 3,330,432 _15850 IAI46_15855: IAI46_15855 - flagellum-specific ATP synthase FliI, at 3,330,432 to 3,331,793 _15855 Position (kb) 3328 3329 3330Strain fitness (log2 ratio) -2 -1 0 1 2at 3327.756 kb on + strand, within IAI46_15840at 3327.756 kb on + strand, within IAI46_15840at 3327.756 kb on + strand, within IAI46_15840at 3327.757 kb on - strand, within IAI46_15840at 3327.757 kb on - strand, within IAI46_15840at 3327.757 kb on - strand, within IAI46_15840at 3327.757 kb on - strand, within IAI46_15840at 3327.761 kb on - strand, within IAI46_15840at 3327.832 kb on - strand, within IAI46_15840at 3327.895 kb on + strand, within IAI46_15840at 3327.904 kb on - strand, within IAI46_15840at 3327.919 kb on - strand, within IAI46_15840at 3327.919 kb on - strand, within IAI46_15840at 3328.163 kb on - strand, within IAI46_15840at 3328.163 kb on - strand, within IAI46_15840at 3328.198 kb on - strand, within IAI46_15840at 3328.243 kb on + strand, within IAI46_15840at 3328.734 kb on + strandat 3328.735 kb on - strandat 3328.742 kb on + strandat 3328.742 kb on + strandat 3328.742 kb on + strandat 3328.742 kb on + strandat 3328.743 kb on - strandat 3328.743 kb on - strandat 3328.743 kb on - strandat 3328.935 kb on + strand, within IAI46_15845at 3328.936 kb on - strand, within IAI46_15845at 3329.400 kb on + strand, within IAI46_15845at 3329.591 kb on + strand, within IAI46_15845at 3329.592 kb on - strand, within IAI46_15845at 3329.660 kb on + strandat 3329.727 kb on + strandat 3329.727 kb on + strandat 3329.727 kb on + strandat 3329.728 kb on - strandat 3329.728 kb on - strandat 3329.728 kb on - strandat 3329.728 kb on - strandat 3329.728 kb on - strandat 3329.728 kb on - strandat 3329.728 kb on - strandat 3329.745 kb on + strandat 3329.745 kb on + strandat 3329.745 kb on + strandat 3329.746 kb on - strandat 3329.746 kb on - strandat 3329.780 kb on + strandat 3330.253 kb on + strand, within IAI46_15850at 3330.253 kb on + strand, within IAI46_15850at 3330.430 kb on + strandat 3330.562 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium acetate 40 uM, aerobic
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3,327,756 + IAI46_15840 0.42 -0.9
3,327,756 + IAI46_15840 0.42 -0.5
3,327,756 + IAI46_15840 0.42 -0.6
3,327,757 - IAI46_15840 0.42 +1.0
3,327,757 - IAI46_15840 0.42 +0.0
3,327,757 - IAI46_15840 0.42 +0.1
3,327,757 - IAI46_15840 0.42 -0.7
3,327,761 - IAI46_15840 0.42 -0.1
3,327,832 - IAI46_15840 0.46 -1.2
3,327,895 + IAI46_15840 0.50 +0.5
3,327,904 - IAI46_15840 0.50 -0.2
3,327,919 - IAI46_15840 0.51 -0.6
3,327,919 - IAI46_15840 0.51 +0.4
3,328,163 - IAI46_15840 0.66 +0.8
3,328,163 - IAI46_15840 0.66 +0.2
3,328,198 - IAI46_15840 0.68 -0.7
3,328,243 + IAI46_15840 0.70 -0.3
3,328,734 + +0.6
3,328,735 - -0.1
3,328,742 + +0.2
3,328,742 + +0.6
3,328,742 + -0.2
3,328,742 + +0.6
3,328,743 - -1.4
3,328,743 - +0.4
3,328,743 - -1.3
3,328,935 + IAI46_15845 0.19 +0.6
3,328,936 - IAI46_15845 0.19 -0.4
3,329,400 + IAI46_15845 0.66 +1.0
3,329,591 + IAI46_15845 0.85 -0.3
3,329,592 - IAI46_15845 0.85 -1.0
3,329,660 + +0.0
3,329,727 + -0.5
3,329,727 + -1.6
3,329,727 + +0.4
3,329,728 - +0.3
3,329,728 - +1.1
3,329,728 - +0.4
3,329,728 - +0.6
3,329,728 - -0.1
3,329,728 - -0.2
3,329,728 - +0.1
3,329,745 + +0.3
3,329,745 + +0.5
3,329,745 + -0.3
3,329,746 - +1.9
3,329,746 - -0.4
3,329,780 + +0.4
3,330,253 + IAI46_15850 0.74 -0.3
3,330,253 + IAI46_15850 0.74 -0.3
3,330,430 + +0.2
3,330,562 + -2.3

Or see this region's nucleotide sequence