Strain Fitness in Serratia liquefaciens MT49 around IAI46_13545

Experiment: Cadmium acetate 40 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_13535 and IAI46_13540 overlap by 1 nucleotidesIAI46_13540 and IAI46_13545 are separated by 1 nucleotidesIAI46_13545 and IAI46_13550 are separated by 427 nucleotides IAI46_13535: IAI46_13535 - peptide ABC transporter permease SapC, at 2,890,320 to 2,891,210 _13535 IAI46_13540: IAI46_13540 - peptide ABC transporter ATP-binding protein SapD, at 2,891,210 to 2,892,202 _13540 IAI46_13545: IAI46_13545 - peptide ABC transporter ATP-binding protein SapF, at 2,892,204 to 2,893,016 _13545 IAI46_13550: IAI46_13550 - peroxidase-related enzyme, at 2,893,444 to 2,894,631 _13550 Position (kb) 2892 2893 2894Strain fitness (log2 ratio) -1 0 1at 2891.217 kb on + strandat 2891.442 kb on + strand, within IAI46_13540at 2891.443 kb on - strand, within IAI46_13540at 2892.914 kb on - strand, within IAI46_13545at 2892.978 kb on - strandat 2893.120 kb on - strandat 2893.120 kb on - strandat 2893.121 kb on + strandat 2893.451 kb on + strandat 2893.451 kb on + strandat 2893.451 kb on + strandat 2893.454 kb on + strandat 2893.454 kb on + strandat 2893.467 kb on + strandat 2893.467 kb on + strandat 2893.467 kb on + strandat 2893.468 kb on - strandat 2893.468 kb on - strandat 2893.468 kb on - strandat 2893.607 kb on + strand, within IAI46_13550at 2893.624 kb on - strand, within IAI46_13550at 2893.843 kb on + strand, within IAI46_13550

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Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium acetate 40 uM, aerobic
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2,891,217 + -0.9
2,891,442 + IAI46_13540 0.23 -1.1
2,891,443 - IAI46_13540 0.23 +1.1
2,892,914 - IAI46_13545 0.87 +0.8
2,892,978 - -0.5
2,893,120 - +1.1
2,893,120 - +0.1
2,893,121 + -0.3
2,893,451 + -0.8
2,893,451 + -1.1
2,893,451 + +0.1
2,893,454 + +1.6
2,893,454 + +1.2
2,893,467 + -1.3
2,893,467 + -1.3
2,893,467 + +1.5
2,893,468 - +0.8
2,893,468 - +0.9
2,893,468 - -0.9
2,893,607 + IAI46_13550 0.14 +0.1
2,893,624 - IAI46_13550 0.15 +0.2
2,893,843 + IAI46_13550 0.34 +1.1

Or see this region's nucleotide sequence