Strain Fitness in Serratia liquefaciens MT49 around IAI46_11735

Experiment: Cadmium acetate 40 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_11730 and IAI46_11735 are separated by 169 nucleotidesIAI46_11735 and IAI46_11740 are separated by 110 nucleotides IAI46_11730: IAI46_11730 - MFS transporter, at 2,474,036 to 2,475,478 _11730 IAI46_11735: IAI46_11735 - TonB-dependent receptor family protein, at 2,475,648 to 2,477,978 _11735 IAI46_11740: IAI46_11740 - fec operon regulator FecR, at 2,478,089 to 2,479,045 _11740 Position (kb) 2475 2476 2477 2478Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2475.014 kb on - strand, within IAI46_11730at 2475.178 kb on + strand, within IAI46_11730at 2475.298 kb on + strand, within IAI46_11730at 2475.320 kb on - strand, within IAI46_11730at 2475.697 kb on + strandat 2475.698 kb on - strandat 2475.698 kb on - strandat 2475.698 kb on - strandat 2475.698 kb on - strandat 2475.699 kb on + strandat 2475.736 kb on + strandat 2475.832 kb on + strandat 2475.832 kb on + strandat 2475.833 kb on - strandat 2475.833 kb on - strandat 2475.949 kb on + strand, within IAI46_11735at 2475.950 kb on - strand, within IAI46_11735at 2475.965 kb on + strand, within IAI46_11735at 2475.966 kb on - strand, within IAI46_11735at 2476.039 kb on + strand, within IAI46_11735at 2476.040 kb on - strand, within IAI46_11735at 2476.045 kb on + strand, within IAI46_11735at 2476.045 kb on + strand, within IAI46_11735at 2476.046 kb on - strand, within IAI46_11735at 2476.185 kb on - strand, within IAI46_11735at 2476.316 kb on - strand, within IAI46_11735at 2476.378 kb on + strand, within IAI46_11735at 2476.378 kb on + strand, within IAI46_11735at 2476.378 kb on + strand, within IAI46_11735at 2476.379 kb on - strand, within IAI46_11735at 2476.431 kb on - strand, within IAI46_11735at 2476.441 kb on + strand, within IAI46_11735at 2476.441 kb on + strand, within IAI46_11735at 2476.442 kb on - strand, within IAI46_11735at 2476.442 kb on - strand, within IAI46_11735at 2476.446 kb on - strand, within IAI46_11735at 2476.446 kb on - strand, within IAI46_11735at 2476.463 kb on + strand, within IAI46_11735at 2476.463 kb on + strand, within IAI46_11735at 2476.464 kb on - strand, within IAI46_11735at 2476.509 kb on + strand, within IAI46_11735at 2476.509 kb on + strand, within IAI46_11735at 2476.509 kb on + strand, within IAI46_11735at 2476.590 kb on + strand, within IAI46_11735at 2476.591 kb on - strand, within IAI46_11735at 2476.616 kb on - strand, within IAI46_11735at 2476.620 kb on + strand, within IAI46_11735at 2476.621 kb on - strand, within IAI46_11735at 2476.646 kb on - strand, within IAI46_11735at 2476.729 kb on + strand, within IAI46_11735at 2476.789 kb on + strand, within IAI46_11735at 2476.789 kb on + strand, within IAI46_11735at 2476.790 kb on - strand, within IAI46_11735at 2476.790 kb on - strand, within IAI46_11735at 2476.794 kb on - strand, within IAI46_11735at 2476.795 kb on + strand, within IAI46_11735at 2476.964 kb on - strand, within IAI46_11735at 2476.974 kb on + strand, within IAI46_11735at 2476.980 kb on - strand, within IAI46_11735at 2476.982 kb on + strand, within IAI46_11735at 2477.174 kb on + strand, within IAI46_11735at 2477.175 kb on - strand, within IAI46_11735at 2477.241 kb on + strand, within IAI46_11735at 2477.298 kb on + strand, within IAI46_11735at 2477.298 kb on + strand, within IAI46_11735at 2477.299 kb on - strand, within IAI46_11735at 2477.309 kb on + strand, within IAI46_11735at 2477.309 kb on + strand, within IAI46_11735at 2477.354 kb on - strand, within IAI46_11735at 2477.583 kb on + strand, within IAI46_11735at 2477.583 kb on + strand, within IAI46_11735at 2477.584 kb on - strand, within IAI46_11735at 2477.669 kb on + strand, within IAI46_11735at 2477.669 kb on + strand, within IAI46_11735at 2477.670 kb on - strand, within IAI46_11735at 2477.746 kb on + strandat 2477.993 kb on - strandat 2478.644 kb on + strand, within IAI46_11740at 2478.680 kb on - strand, within IAI46_11740at 2478.841 kb on - strand, within IAI46_11740at 2478.978 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium acetate 40 uM, aerobic
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2,475,014 - IAI46_11730 0.68 -0.1
2,475,178 + IAI46_11730 0.79 -0.2
2,475,298 + IAI46_11730 0.87 +0.2
2,475,320 - IAI46_11730 0.89 -0.2
2,475,697 + -2.3
2,475,698 - -2.0
2,475,698 - -0.4
2,475,698 - +0.1
2,475,698 - -0.4
2,475,699 + -2.8
2,475,736 + +0.8
2,475,832 + -0.0
2,475,832 + +0.2
2,475,833 - -0.1
2,475,833 - +0.2
2,475,949 + IAI46_11735 0.13 -0.0
2,475,950 - IAI46_11735 0.13 +1.2
2,475,965 + IAI46_11735 0.14 +0.8
2,475,966 - IAI46_11735 0.14 +0.5
2,476,039 + IAI46_11735 0.17 +0.6
2,476,040 - IAI46_11735 0.17 +1.1
2,476,045 + IAI46_11735 0.17 +0.5
2,476,045 + IAI46_11735 0.17 -0.4
2,476,046 - IAI46_11735 0.17 -0.5
2,476,185 - IAI46_11735 0.23 -1.7
2,476,316 - IAI46_11735 0.29 -1.5
2,476,378 + IAI46_11735 0.31 +0.9
2,476,378 + IAI46_11735 0.31 +0.2
2,476,378 + IAI46_11735 0.31 +0.7
2,476,379 - IAI46_11735 0.31 +0.2
2,476,431 - IAI46_11735 0.34 +0.5
2,476,441 + IAI46_11735 0.34 +2.3
2,476,441 + IAI46_11735 0.34 +1.0
2,476,442 - IAI46_11735 0.34 -0.0
2,476,442 - IAI46_11735 0.34 +0.0
2,476,446 - IAI46_11735 0.34 -1.2
2,476,446 - IAI46_11735 0.34 +0.6
2,476,463 + IAI46_11735 0.35 -0.6
2,476,463 + IAI46_11735 0.35 +0.2
2,476,464 - IAI46_11735 0.35 +1.5
2,476,509 + IAI46_11735 0.37 +0.6
2,476,509 + IAI46_11735 0.37 -0.1
2,476,509 + IAI46_11735 0.37 +0.2
2,476,590 + IAI46_11735 0.40 +0.5
2,476,591 - IAI46_11735 0.40 -1.3
2,476,616 - IAI46_11735 0.42 +0.1
2,476,620 + IAI46_11735 0.42 -0.5
2,476,621 - IAI46_11735 0.42 -0.4
2,476,646 - IAI46_11735 0.43 +0.4
2,476,729 + IAI46_11735 0.46 +0.8
2,476,789 + IAI46_11735 0.49 +0.4
2,476,789 + IAI46_11735 0.49 +0.1
2,476,790 - IAI46_11735 0.49 +0.6
2,476,790 - IAI46_11735 0.49 -0.5
2,476,794 - IAI46_11735 0.49 -0.7
2,476,795 + IAI46_11735 0.49 -0.1
2,476,964 - IAI46_11735 0.56 -0.6
2,476,974 + IAI46_11735 0.57 -0.3
2,476,980 - IAI46_11735 0.57 +0.5
2,476,982 + IAI46_11735 0.57 -1.7
2,477,174 + IAI46_11735 0.65 -1.5
2,477,175 - IAI46_11735 0.66 -0.6
2,477,241 + IAI46_11735 0.68 +0.1
2,477,298 + IAI46_11735 0.71 -0.0
2,477,298 + IAI46_11735 0.71 -1.1
2,477,299 - IAI46_11735 0.71 +1.6
2,477,309 + IAI46_11735 0.71 -0.8
2,477,309 + IAI46_11735 0.71 +0.5
2,477,354 - IAI46_11735 0.73 +1.0
2,477,583 + IAI46_11735 0.83 -0.8
2,477,583 + IAI46_11735 0.83 -0.1
2,477,584 - IAI46_11735 0.83 -2.5
2,477,669 + IAI46_11735 0.87 +0.4
2,477,669 + IAI46_11735 0.87 -0.7
2,477,670 - IAI46_11735 0.87 +0.8
2,477,746 + -0.1
2,477,993 - -0.9
2,478,644 + IAI46_11740 0.58 +2.1
2,478,680 - IAI46_11740 0.62 -0.1
2,478,841 - IAI46_11740 0.79 -0.8
2,478,978 - -0.0

Or see this region's nucleotide sequence