Experiment: Cadmium acetate 40 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_10645 and IAI46_10650 are separated by 88 nucleotides IAI46_10650 and IAI46_10655 are separated by 86 nucleotides IAI46_10655 and IAI46_10660 are separated by 94 nucleotides IAI46_10660 and IAI46_10665 are separated by 17 nucleotides
IAI46_10645: IAI46_10645 - MFS transporter, at 2,248,840 to 2,250,150
_10645
IAI46_10650: IAI46_10650 - GFA family protein, at 2,250,239 to 2,250,625
_10650
IAI46_10655: IAI46_10655 - hydrolase, at 2,250,712 to 2,251,410
_10655
IAI46_10660: IAI46_10660 - TetR/AcrR family transcriptional regulator, at 2,251,505 to 2,252,161
_10660
IAI46_10665: IAI46_10665 - aromatic amino acid lyase, at 2,252,179 to 2,253,828
_10665
Position (kb)
2250
2251
2252 Strain fitness (log2 ratio)
-1
0
1 at 2249.819 kb on + strand, within IAI46_10645 at 2249.819 kb on + strand, within IAI46_10645 at 2249.820 kb on - strand, within IAI46_10645 at 2249.820 kb on - strand, within IAI46_10645 at 2249.969 kb on + strand, within IAI46_10645 at 2249.969 kb on + strand, within IAI46_10645 at 2249.969 kb on + strand, within IAI46_10645 at 2250.076 kb on - strand at 2250.173 kb on - strand at 2250.196 kb on - strand at 2250.650 kb on + strand at 2250.650 kb on + strand at 2250.657 kb on + strand at 2250.668 kb on + strand at 2250.671 kb on + strand at 2250.671 kb on + strand at 2250.672 kb on - strand at 2250.672 kb on - strand at 2250.674 kb on - strand at 2250.674 kb on - strand at 2250.753 kb on - strand at 2250.798 kb on - strand, within IAI46_10655 at 2250.899 kb on + strand, within IAI46_10655 at 2251.311 kb on + strand, within IAI46_10655 at 2251.569 kb on + strand at 2251.570 kb on - strand at 2251.620 kb on - strand, within IAI46_10660 at 2252.187 kb on + strand at 2252.282 kb on + strand at 2252.283 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cadmium acetate 40 uM, aerobic remove 2,249,819 + IAI46_10645 0.75 +0.1 2,249,819 + IAI46_10645 0.75 +0.4 2,249,820 - IAI46_10645 0.75 -0.8 2,249,820 - IAI46_10645 0.75 +0.5 2,249,969 + IAI46_10645 0.86 +0.3 2,249,969 + IAI46_10645 0.86 -1.5 2,249,969 + IAI46_10645 0.86 -1.6 2,250,076 - -0.0 2,250,173 - +1.1 2,250,196 - -0.7 2,250,650 + +1.1 2,250,650 + -0.9 2,250,657 + +0.5 2,250,668 + +0.3 2,250,671 + +0.1 2,250,671 + +1.7 2,250,672 - +0.1 2,250,672 - +1.1 2,250,674 - +1.5 2,250,674 - -0.8 2,250,753 - -0.9 2,250,798 - IAI46_10655 0.12 -1.3 2,250,899 + IAI46_10655 0.27 +0.5 2,251,311 + IAI46_10655 0.86 +1.3 2,251,569 + +1.1 2,251,570 - +1.5 2,251,620 - IAI46_10660 0.18 +0.4 2,252,187 + -0.4 2,252,282 + +1.3 2,252,283 - +0.9
Or see this region's nucleotide sequence