Strain Fitness in Serratia liquefaciens MT49 around IAI46_10655

Experiment: Cadmium acetate 40 uM, aerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_10645 and IAI46_10650 are separated by 88 nucleotidesIAI46_10650 and IAI46_10655 are separated by 86 nucleotidesIAI46_10655 and IAI46_10660 are separated by 94 nucleotidesIAI46_10660 and IAI46_10665 are separated by 17 nucleotides IAI46_10645: IAI46_10645 - MFS transporter, at 2,248,840 to 2,250,150 _10645 IAI46_10650: IAI46_10650 - GFA family protein, at 2,250,239 to 2,250,625 _10650 IAI46_10655: IAI46_10655 - hydrolase, at 2,250,712 to 2,251,410 _10655 IAI46_10660: IAI46_10660 - TetR/AcrR family transcriptional regulator, at 2,251,505 to 2,252,161 _10660 IAI46_10665: IAI46_10665 - aromatic amino acid lyase, at 2,252,179 to 2,253,828 _10665 Position (kb) 2250 2251 2252Strain fitness (log2 ratio) -1 0 1at 2249.819 kb on + strand, within IAI46_10645at 2249.819 kb on + strand, within IAI46_10645at 2249.820 kb on - strand, within IAI46_10645at 2249.820 kb on - strand, within IAI46_10645at 2249.969 kb on + strand, within IAI46_10645at 2249.969 kb on + strand, within IAI46_10645at 2249.969 kb on + strand, within IAI46_10645at 2250.076 kb on - strandat 2250.173 kb on - strandat 2250.196 kb on - strandat 2250.650 kb on + strandat 2250.650 kb on + strandat 2250.657 kb on + strandat 2250.668 kb on + strandat 2250.671 kb on + strandat 2250.671 kb on + strandat 2250.672 kb on - strandat 2250.672 kb on - strandat 2250.674 kb on - strandat 2250.674 kb on - strandat 2250.753 kb on - strandat 2250.798 kb on - strand, within IAI46_10655at 2250.899 kb on + strand, within IAI46_10655at 2251.311 kb on + strand, within IAI46_10655at 2251.569 kb on + strandat 2251.570 kb on - strandat 2251.620 kb on - strand, within IAI46_10660at 2252.187 kb on + strandat 2252.282 kb on + strandat 2252.283 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium acetate 40 uM, aerobic
remove
2,249,819 + IAI46_10645 0.75 +0.1
2,249,819 + IAI46_10645 0.75 +0.4
2,249,820 - IAI46_10645 0.75 -0.8
2,249,820 - IAI46_10645 0.75 +0.5
2,249,969 + IAI46_10645 0.86 +0.3
2,249,969 + IAI46_10645 0.86 -1.5
2,249,969 + IAI46_10645 0.86 -1.6
2,250,076 - -0.0
2,250,173 - +1.1
2,250,196 - -0.7
2,250,650 + +1.1
2,250,650 + -0.9
2,250,657 + +0.5
2,250,668 + +0.3
2,250,671 + +0.1
2,250,671 + +1.7
2,250,672 - +0.1
2,250,672 - +1.1
2,250,674 - +1.5
2,250,674 - -0.8
2,250,753 - -0.9
2,250,798 - IAI46_10655 0.12 -1.3
2,250,899 + IAI46_10655 0.27 +0.5
2,251,311 + IAI46_10655 0.86 +1.3
2,251,569 + +1.1
2,251,570 - +1.5
2,251,620 - IAI46_10660 0.18 +0.4
2,252,187 + -0.4
2,252,282 + +1.3
2,252,283 - +0.9

Or see this region's nucleotide sequence