Strain Fitness in Serratia liquefaciens MT49 around IAI46_09810

Experiment: Cadmium acetate 40 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_09800 and IAI46_09805 are separated by 171 nucleotidesIAI46_09805 and IAI46_09810 are separated by 13 nucleotidesIAI46_09810 and IAI46_09815 overlap by 11 nucleotidesIAI46_09815 and IAI46_09820 overlap by 1 nucleotides IAI46_09800: IAI46_09800 - beta-ketoacyl-ACP synthase II, at 2,074,922 to 2,076,163 _09800 IAI46_09805: IAI46_09805 - aminodeoxychorismate lyase, at 2,076,335 to 2,077,132 _09805 IAI46_09810: IAI46_09810 - endolytic transglycosylase MltG, at 2,077,146 to 2,078,171 _09810 IAI46_09815: IAI46_09815 - dTMP kinase, at 2,078,161 to 2,078,796 _09815 IAI46_09820: IAI46_09820 - DNA polymerase III subunit delta', at 2,078,796 to 2,079,803 _09820 Position (kb) 2077 2078 2079Strain fitness (log2 ratio) -1 0 1 2at 2076.161 kb on + strandat 2076.161 kb on + strandat 2076.162 kb on - strandat 2076.162 kb on - strandat 2076.298 kb on - strandat 2076.298 kb on - strandat 2076.334 kb on + strandat 2076.335 kb on - strandat 2076.335 kb on - strandat 2076.335 kb on - strandat 2076.416 kb on - strand, within IAI46_09805at 2076.608 kb on + strand, within IAI46_09805at 2076.671 kb on + strand, within IAI46_09805at 2076.974 kb on + strand, within IAI46_09805at 2076.986 kb on + strand, within IAI46_09805at 2077.047 kb on + strand, within IAI46_09805at 2077.106 kb on + strandat 2077.415 kb on + strand, within IAI46_09810at 2077.553 kb on + strand, within IAI46_09810at 2077.644 kb on + strand, within IAI46_09810at 2077.873 kb on + strand, within IAI46_09810at 2077.914 kb on + strand, within IAI46_09810at 2077.914 kb on + strand, within IAI46_09810at 2077.914 kb on + strand, within IAI46_09810at 2077.914 kb on + strand, within IAI46_09810at 2077.914 kb on + strand, within IAI46_09810at 2077.914 kb on + strand, within IAI46_09810at 2077.914 kb on + strand, within IAI46_09810at 2077.968 kb on + strand, within IAI46_09810at 2077.968 kb on + strand, within IAI46_09810at 2077.968 kb on + strand, within IAI46_09810at 2078.117 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium acetate 40 uM, aerobic
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2,076,161 + -0.1
2,076,161 + +0.7
2,076,162 - +0.4
2,076,162 - +0.0
2,076,298 - -0.2
2,076,298 - -0.6
2,076,334 + +0.3
2,076,335 - +0.3
2,076,335 - +0.8
2,076,335 - -0.3
2,076,416 - IAI46_09805 0.10 -1.7
2,076,608 + IAI46_09805 0.34 -0.5
2,076,671 + IAI46_09805 0.42 +1.0
2,076,974 + IAI46_09805 0.80 +0.2
2,076,986 + IAI46_09805 0.82 -0.5
2,077,047 + IAI46_09805 0.89 +0.4
2,077,106 + +0.6
2,077,415 + IAI46_09810 0.26 -1.1
2,077,553 + IAI46_09810 0.40 -1.0
2,077,644 + IAI46_09810 0.49 +0.4
2,077,873 + IAI46_09810 0.71 -0.3
2,077,914 + IAI46_09810 0.75 -0.7
2,077,914 + IAI46_09810 0.75 +0.2
2,077,914 + IAI46_09810 0.75 +1.8
2,077,914 + IAI46_09810 0.75 +0.8
2,077,914 + IAI46_09810 0.75 +0.4
2,077,914 + IAI46_09810 0.75 +0.2
2,077,914 + IAI46_09810 0.75 -0.6
2,077,968 + IAI46_09810 0.80 +1.8
2,077,968 + IAI46_09810 0.80 -0.2
2,077,968 + IAI46_09810 0.80 -0.4
2,078,117 + +0.5

Or see this region's nucleotide sequence