Strain Fitness in Serratia liquefaciens MT49 around IAI46_09220

Experiment: Cadmium acetate 40 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_09210 and IAI46_09215 are separated by 58 nucleotidesIAI46_09215 and IAI46_09220 are separated by 145 nucleotidesIAI46_09220 and IAI46_09225 are separated by 58 nucleotidesIAI46_09225 and IAI46_09230 are separated by 10 nucleotidesIAI46_09230 and IAI46_09235 are separated by 659 nucleotides IAI46_09210: IAI46_09210 - excinuclease ABC subunit UvrC, at 1,971,838 to 1,973,670 _09210 IAI46_09215: IAI46_09215 - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, at 1,973,729 to 1,974,277 _09215 IAI46_09220: IAI46_09220 - tRNA-Gly, at 1,974,423 to 1,974,498 _09220 IAI46_09225: IAI46_09225 - tRNA-Cys, at 1,974,557 to 1,974,630 _09225 IAI46_09230: IAI46_09230 - tRNA-Leu, at 1,974,641 to 1,974,726 _09230 IAI46_09235: IAI46_09235 - hypothetical protein, at 1,975,386 to 1,975,616 _09235 Position (kb) 1974 1975Strain fitness (log2 ratio) -1 0 1at 1973.493 kb on - strandat 1973.560 kb on + strandat 1973.561 kb on - strandat 1973.562 kb on + strandat 1973.563 kb on - strandat 1973.582 kb on + strandat 1973.687 kb on + strandat 1973.713 kb on + strandat 1973.714 kb on - strandat 1973.717 kb on + strandat 1973.728 kb on + strandat 1974.887 kb on + strandat 1974.888 kb on - strandat 1974.949 kb on - strandat 1974.957 kb on + strandat 1974.975 kb on + strandat 1974.975 kb on + strandat 1974.975 kb on + strandat 1974.979 kb on + strandat 1974.979 kb on + strandat 1975.029 kb on + strandat 1975.029 kb on + strandat 1975.030 kb on - strandat 1975.148 kb on + strandat 1975.477 kb on + strand, within IAI46_09235

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Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium acetate 40 uM, aerobic
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1,973,493 - +0.1
1,973,560 + +0.6
1,973,561 - +0.1
1,973,562 + +0.1
1,973,563 - +0.9
1,973,582 + +0.6
1,973,687 + -1.3
1,973,713 + -0.7
1,973,714 - +0.9
1,973,717 + -1.3
1,973,728 + -1.2
1,974,887 + -1.0
1,974,888 - -0.7
1,974,949 - +0.0
1,974,957 + +1.0
1,974,975 + -0.7
1,974,975 + -0.1
1,974,975 + +0.0
1,974,979 + +0.1
1,974,979 + +1.1
1,975,029 + -0.8
1,975,029 + -0.5
1,975,030 - -0.8
1,975,148 + -0.7
1,975,477 + IAI46_09235 0.39 -0.1

Or see this region's nucleotide sequence