Strain Fitness in Serratia liquefaciens MT49 around IAI46_08325

Experiment: Cadmium acetate 40 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_08315 and IAI46_08320 are separated by 5 nucleotidesIAI46_08320 and IAI46_08325 are separated by 173 nucleotidesIAI46_08325 and IAI46_08330 are separated by 140 nucleotidesIAI46_08330 and IAI46_08335 are separated by 203 nucleotides IAI46_08315: IAI46_08315 - undecaprenyl-diphosphate phosphatase, at 1,771,225 to 1,771,830 _08315 IAI46_08320: IAI46_08320 - phosphatase PAP2 family protein, at 1,771,836 to 1,772,570 _08320 IAI46_08325: IAI46_08325 - 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase, at 1,772,744 to 1,773,580 _08325 IAI46_08330: IAI46_08330 - serine protease inhibitor ecotin, at 1,773,721 to 1,774,233 _08330 IAI46_08335: IAI46_08335 - pyridoxal-phosphate dependent enzyme, at 1,774,437 to 1,775,405 _08335 Position (kb) 1772 1773 1774Strain fitness (log2 ratio) -2 -1 0 1at 1771.814 kb on + strandat 1771.828 kb on + strandat 1771.829 kb on - strandat 1771.829 kb on - strandat 1771.829 kb on - strandat 1771.829 kb on - strandat 1771.833 kb on + strandat 1771.833 kb on + strandat 1771.833 kb on + strandat 1771.838 kb on - strandat 1771.838 kb on - strandat 1771.838 kb on - strandat 1771.876 kb on + strandat 1771.928 kb on + strand, within IAI46_08320at 1772.005 kb on + strand, within IAI46_08320at 1772.107 kb on - strand, within IAI46_08320at 1772.134 kb on + strand, within IAI46_08320at 1772.147 kb on + strand, within IAI46_08320at 1772.199 kb on - strand, within IAI46_08320at 1772.199 kb on - strand, within IAI46_08320at 1772.261 kb on + strand, within IAI46_08320at 1772.269 kb on + strand, within IAI46_08320at 1772.269 kb on + strand, within IAI46_08320at 1772.396 kb on - strand, within IAI46_08320at 1772.461 kb on - strand, within IAI46_08320at 1772.550 kb on + strandat 1772.977 kb on + strand, within IAI46_08325at 1772.978 kb on - strand, within IAI46_08325at 1772.978 kb on - strand, within IAI46_08325at 1773.078 kb on - strand, within IAI46_08325at 1773.176 kb on - strand, within IAI46_08325at 1773.493 kb on + strand, within IAI46_08325at 1773.497 kb on + strandat 1773.530 kb on + strandat 1773.536 kb on + strandat 1773.554 kb on + strandat 1773.555 kb on - strandat 1773.555 kb on - strandat 1773.555 kb on - strandat 1773.556 kb on + strandat 1773.678 kb on - strandat 1773.680 kb on + strandat 1773.680 kb on + strandat 1773.681 kb on - strandat 1773.681 kb on - strandat 1773.709 kb on + strandat 1773.709 kb on + strandat 1773.710 kb on - strandat 1773.715 kb on + strandat 1773.807 kb on + strand, within IAI46_08330at 1773.808 kb on - strand, within IAI46_08330at 1773.847 kb on - strand, within IAI46_08330at 1773.880 kb on + strand, within IAI46_08330at 1773.880 kb on + strand, within IAI46_08330at 1773.881 kb on - strand, within IAI46_08330at 1774.009 kb on + strand, within IAI46_08330at 1774.015 kb on + strand, within IAI46_08330at 1774.016 kb on - strand, within IAI46_08330at 1774.074 kb on + strand, within IAI46_08330at 1774.129 kb on + strand, within IAI46_08330at 1774.130 kb on - strand, within IAI46_08330at 1774.156 kb on + strand, within IAI46_08330at 1774.157 kb on - strand, within IAI46_08330at 1774.254 kb on + strandat 1774.278 kb on + strandat 1774.360 kb on + strandat 1774.360 kb on + strandat 1774.360 kb on + strandat 1774.361 kb on - strandat 1774.361 kb on - strandat 1774.361 kb on - strandat 1774.366 kb on + strandat 1774.367 kb on - strandat 1774.385 kb on + strandat 1774.390 kb on - strandat 1774.425 kb on - strandat 1774.486 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium acetate 40 uM, aerobic
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1,771,814 + +0.6
1,771,828 + -1.2
1,771,829 - -1.0
1,771,829 - -0.7
1,771,829 - -0.3
1,771,829 - +0.1
1,771,833 + -1.0
1,771,833 + -2.1
1,771,833 + -0.8
1,771,838 - +1.1
1,771,838 - -0.3
1,771,838 - -1.5
1,771,876 + +0.7
1,771,928 + IAI46_08320 0.13 -0.8
1,772,005 + IAI46_08320 0.23 +1.2
1,772,107 - IAI46_08320 0.37 +0.5
1,772,134 + IAI46_08320 0.41 -0.4
1,772,147 + IAI46_08320 0.42 -0.1
1,772,199 - IAI46_08320 0.49 +0.7
1,772,199 - IAI46_08320 0.49 -0.2
1,772,261 + IAI46_08320 0.58 -0.2
1,772,269 + IAI46_08320 0.59 -0.1
1,772,269 + IAI46_08320 0.59 +0.5
1,772,396 - IAI46_08320 0.76 +0.1
1,772,461 - IAI46_08320 0.85 +0.3
1,772,550 + -0.1
1,772,977 + IAI46_08325 0.28 +0.9
1,772,978 - IAI46_08325 0.28 -0.8
1,772,978 - IAI46_08325 0.28 -0.3
1,773,078 - IAI46_08325 0.40 +1.1
1,773,176 - IAI46_08325 0.52 +0.9
1,773,493 + IAI46_08325 0.89 +0.7
1,773,497 + +1.4
1,773,530 + -0.6
1,773,536 + +1.0
1,773,554 + +0.3
1,773,555 - +0.5
1,773,555 - +1.1
1,773,555 - +0.2
1,773,556 + +0.9
1,773,678 - -2.0
1,773,680 + +0.3
1,773,680 + +0.4
1,773,681 - -2.4
1,773,681 - +0.1
1,773,709 + +1.2
1,773,709 + +0.5
1,773,710 - +0.5
1,773,715 + -0.6
1,773,807 + IAI46_08330 0.17 +1.1
1,773,808 - IAI46_08330 0.17 +0.2
1,773,847 - IAI46_08330 0.25 -1.1
1,773,880 + IAI46_08330 0.31 -0.4
1,773,880 + IAI46_08330 0.31 +0.3
1,773,881 - IAI46_08330 0.31 +1.0
1,774,009 + IAI46_08330 0.56 -0.5
1,774,015 + IAI46_08330 0.57 -0.1
1,774,016 - IAI46_08330 0.58 +0.4
1,774,074 + IAI46_08330 0.69 +0.1
1,774,129 + IAI46_08330 0.80 +0.0
1,774,130 - IAI46_08330 0.80 -0.8
1,774,156 + IAI46_08330 0.85 +0.7
1,774,157 - IAI46_08330 0.85 -0.1
1,774,254 + -0.9
1,774,278 + +0.2
1,774,360 + +1.0
1,774,360 + +1.5
1,774,360 + -0.4
1,774,361 - -0.0
1,774,361 - +0.8
1,774,361 - +0.1
1,774,366 + -0.3
1,774,367 - +0.5
1,774,385 + +0.6
1,774,390 - -0.1
1,774,425 - +0.5
1,774,486 + -0.1

Or see this region's nucleotide sequence