Experiment: Cadmium acetate 40 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_08315 and IAI46_08320 are separated by 5 nucleotides IAI46_08320 and IAI46_08325 are separated by 173 nucleotides IAI46_08325 and IAI46_08330 are separated by 140 nucleotides IAI46_08330 and IAI46_08335 are separated by 203 nucleotides
IAI46_08315: IAI46_08315 - undecaprenyl-diphosphate phosphatase, at 1,771,225 to 1,771,830
_08315
IAI46_08320: IAI46_08320 - phosphatase PAP2 family protein, at 1,771,836 to 1,772,570
_08320
IAI46_08325: IAI46_08325 - 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase, at 1,772,744 to 1,773,580
_08325
IAI46_08330: IAI46_08330 - serine protease inhibitor ecotin, at 1,773,721 to 1,774,233
_08330
IAI46_08335: IAI46_08335 - pyridoxal-phosphate dependent enzyme, at 1,774,437 to 1,775,405
_08335
Position (kb)
1772
1773
1774 Strain fitness (log2 ratio)
-2
-1
0
1 at 1771.814 kb on + strand at 1771.828 kb on + strand at 1771.829 kb on - strand at 1771.829 kb on - strand at 1771.829 kb on - strand at 1771.829 kb on - strand at 1771.833 kb on + strand at 1771.833 kb on + strand at 1771.833 kb on + strand at 1771.838 kb on - strand at 1771.838 kb on - strand at 1771.838 kb on - strand at 1771.876 kb on + strand at 1771.928 kb on + strand, within IAI46_08320 at 1772.005 kb on + strand, within IAI46_08320 at 1772.107 kb on - strand, within IAI46_08320 at 1772.134 kb on + strand, within IAI46_08320 at 1772.147 kb on + strand, within IAI46_08320 at 1772.199 kb on - strand, within IAI46_08320 at 1772.199 kb on - strand, within IAI46_08320 at 1772.261 kb on + strand, within IAI46_08320 at 1772.269 kb on + strand, within IAI46_08320 at 1772.269 kb on + strand, within IAI46_08320 at 1772.396 kb on - strand, within IAI46_08320 at 1772.461 kb on - strand, within IAI46_08320 at 1772.550 kb on + strand at 1772.977 kb on + strand, within IAI46_08325 at 1772.978 kb on - strand, within IAI46_08325 at 1772.978 kb on - strand, within IAI46_08325 at 1773.078 kb on - strand, within IAI46_08325 at 1773.176 kb on - strand, within IAI46_08325 at 1773.493 kb on + strand, within IAI46_08325 at 1773.497 kb on + strand at 1773.530 kb on + strand at 1773.536 kb on + strand at 1773.554 kb on + strand at 1773.555 kb on - strand at 1773.555 kb on - strand at 1773.555 kb on - strand at 1773.556 kb on + strand at 1773.678 kb on - strand at 1773.680 kb on + strand at 1773.680 kb on + strand at 1773.681 kb on - strand at 1773.681 kb on - strand at 1773.709 kb on + strand at 1773.709 kb on + strand at 1773.710 kb on - strand at 1773.715 kb on + strand at 1773.807 kb on + strand, within IAI46_08330 at 1773.808 kb on - strand, within IAI46_08330 at 1773.847 kb on - strand, within IAI46_08330 at 1773.880 kb on + strand, within IAI46_08330 at 1773.880 kb on + strand, within IAI46_08330 at 1773.881 kb on - strand, within IAI46_08330 at 1774.009 kb on + strand, within IAI46_08330 at 1774.015 kb on + strand, within IAI46_08330 at 1774.016 kb on - strand, within IAI46_08330 at 1774.074 kb on + strand, within IAI46_08330 at 1774.129 kb on + strand, within IAI46_08330 at 1774.130 kb on - strand, within IAI46_08330 at 1774.156 kb on + strand, within IAI46_08330 at 1774.157 kb on - strand, within IAI46_08330 at 1774.254 kb on + strand at 1774.278 kb on + strand at 1774.360 kb on + strand at 1774.360 kb on + strand at 1774.360 kb on + strand at 1774.361 kb on - strand at 1774.361 kb on - strand at 1774.361 kb on - strand at 1774.366 kb on + strand at 1774.367 kb on - strand at 1774.385 kb on + strand at 1774.390 kb on - strand at 1774.425 kb on - strand at 1774.486 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cadmium acetate 40 uM, aerobic remove 1,771,814 + +0.6 1,771,828 + -1.2 1,771,829 - -1.0 1,771,829 - -0.7 1,771,829 - -0.3 1,771,829 - +0.1 1,771,833 + -1.0 1,771,833 + -2.1 1,771,833 + -0.8 1,771,838 - +1.1 1,771,838 - -0.3 1,771,838 - -1.5 1,771,876 + +0.7 1,771,928 + IAI46_08320 0.13 -0.8 1,772,005 + IAI46_08320 0.23 +1.2 1,772,107 - IAI46_08320 0.37 +0.5 1,772,134 + IAI46_08320 0.41 -0.4 1,772,147 + IAI46_08320 0.42 -0.1 1,772,199 - IAI46_08320 0.49 +0.7 1,772,199 - IAI46_08320 0.49 -0.2 1,772,261 + IAI46_08320 0.58 -0.2 1,772,269 + IAI46_08320 0.59 -0.1 1,772,269 + IAI46_08320 0.59 +0.5 1,772,396 - IAI46_08320 0.76 +0.1 1,772,461 - IAI46_08320 0.85 +0.3 1,772,550 + -0.1 1,772,977 + IAI46_08325 0.28 +0.9 1,772,978 - IAI46_08325 0.28 -0.8 1,772,978 - IAI46_08325 0.28 -0.3 1,773,078 - IAI46_08325 0.40 +1.1 1,773,176 - IAI46_08325 0.52 +0.9 1,773,493 + IAI46_08325 0.89 +0.7 1,773,497 + +1.4 1,773,530 + -0.6 1,773,536 + +1.0 1,773,554 + +0.3 1,773,555 - +0.5 1,773,555 - +1.1 1,773,555 - +0.2 1,773,556 + +0.9 1,773,678 - -2.0 1,773,680 + +0.3 1,773,680 + +0.4 1,773,681 - -2.4 1,773,681 - +0.1 1,773,709 + +1.2 1,773,709 + +0.5 1,773,710 - +0.5 1,773,715 + -0.6 1,773,807 + IAI46_08330 0.17 +1.1 1,773,808 - IAI46_08330 0.17 +0.2 1,773,847 - IAI46_08330 0.25 -1.1 1,773,880 + IAI46_08330 0.31 -0.4 1,773,880 + IAI46_08330 0.31 +0.3 1,773,881 - IAI46_08330 0.31 +1.0 1,774,009 + IAI46_08330 0.56 -0.5 1,774,015 + IAI46_08330 0.57 -0.1 1,774,016 - IAI46_08330 0.58 +0.4 1,774,074 + IAI46_08330 0.69 +0.1 1,774,129 + IAI46_08330 0.80 +0.0 1,774,130 - IAI46_08330 0.80 -0.8 1,774,156 + IAI46_08330 0.85 +0.7 1,774,157 - IAI46_08330 0.85 -0.1 1,774,254 + -0.9 1,774,278 + +0.2 1,774,360 + +1.0 1,774,360 + +1.5 1,774,360 + -0.4 1,774,361 - -0.0 1,774,361 - +0.8 1,774,361 - +0.1 1,774,366 + -0.3 1,774,367 - +0.5 1,774,385 + +0.6 1,774,390 - -0.1 1,774,425 - +0.5 1,774,486 + -0.1
Or see this region's nucleotide sequence