Strain Fitness in Serratia liquefaciens MT49 around IAI46_08215

Experiment: Cadmium acetate 40 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_08210 and IAI46_08215 are separated by 4 nucleotidesIAI46_08215 and IAI46_08220 are separated by 297 nucleotidesIAI46_08220 and IAI46_08225 are separated by 229 nucleotides IAI46_08210: IAI46_08210 - histidinol dehydrogenase, at 1,747,864 to 1,749,171 _08210 IAI46_08215: IAI46_08215 - ATP phosphoribosyltransferase, at 1,749,176 to 1,750,075 _08215 IAI46_08220: IAI46_08220 - his operon leader peptide, at 1,750,373 to 1,750,420 _08220 IAI46_08225: IAI46_08225 - SDR family oxidoreductase, at 1,750,650 to 1,751,474 _08225 Position (kb) 1749 1750 1751Strain fitness (log2 ratio) -2 -1 0 1at 1748.476 kb on - strand, within IAI46_08210at 1748.593 kb on - strand, within IAI46_08210at 1748.719 kb on - strand, within IAI46_08210at 1748.719 kb on - strand, within IAI46_08210at 1748.744 kb on - strand, within IAI46_08210at 1748.744 kb on - strand, within IAI46_08210at 1748.779 kb on - strand, within IAI46_08210at 1748.917 kb on + strand, within IAI46_08210at 1748.919 kb on + strand, within IAI46_08210at 1749.009 kb on - strand, within IAI46_08210at 1749.200 kb on + strandat 1749.393 kb on + strand, within IAI46_08215at 1749.393 kb on + strand, within IAI46_08215at 1749.393 kb on + strand, within IAI46_08215at 1749.393 kb on + strand, within IAI46_08215at 1749.492 kb on - strand, within IAI46_08215at 1749.664 kb on - strand, within IAI46_08215at 1749.729 kb on + strand, within IAI46_08215at 1749.730 kb on - strand, within IAI46_08215at 1749.748 kb on + strand, within IAI46_08215at 1749.905 kb on - strand, within IAI46_08215at 1749.928 kb on + strand, within IAI46_08215at 1750.050 kb on - strandat 1750.089 kb on + strandat 1750.089 kb on + strandat 1750.102 kb on + strandat 1750.170 kb on - strandat 1750.337 kb on + strandat 1750.375 kb on - strandat 1750.375 kb on - strandat 1750.434 kb on + strandat 1750.436 kb on + strandat 1750.437 kb on - strandat 1750.437 kb on - strandat 1750.437 kb on - strandat 1750.437 kb on - strandat 1750.446 kb on - strandat 1750.470 kb on - strandat 1750.540 kb on + strandat 1750.541 kb on - strandat 1750.543 kb on + strandat 1750.559 kb on + strandat 1750.559 kb on + strandat 1750.564 kb on - strandat 1750.564 kb on - strandat 1750.569 kb on + strandat 1750.570 kb on - strandat 1750.570 kb on - strandat 1750.586 kb on - strandat 1750.586 kb on - strandat 1750.612 kb on - strandat 1750.791 kb on + strand, within IAI46_08225at 1750.876 kb on + strand, within IAI46_08225at 1750.877 kb on - strand, within IAI46_08225at 1750.877 kb on - strand, within IAI46_08225at 1750.911 kb on + strand, within IAI46_08225at 1750.995 kb on + strand, within IAI46_08225

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Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium acetate 40 uM, aerobic
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1,748,476 - IAI46_08210 0.47 -2.0
1,748,593 - IAI46_08210 0.56 -0.8
1,748,719 - IAI46_08210 0.65 -0.9
1,748,719 - IAI46_08210 0.65 -1.8
1,748,744 - IAI46_08210 0.67 -0.5
1,748,744 - IAI46_08210 0.67 -1.9
1,748,779 - IAI46_08210 0.70 -2.6
1,748,917 + IAI46_08210 0.81 -0.3
1,748,919 + IAI46_08210 0.81 -1.0
1,749,009 - IAI46_08210 0.88 -0.8
1,749,200 + -0.7
1,749,393 + IAI46_08215 0.24 +0.8
1,749,393 + IAI46_08215 0.24 -0.5
1,749,393 + IAI46_08215 0.24 -0.8
1,749,393 + IAI46_08215 0.24 -0.8
1,749,492 - IAI46_08215 0.35 -0.2
1,749,664 - IAI46_08215 0.54 -0.8
1,749,729 + IAI46_08215 0.61 +0.0
1,749,730 - IAI46_08215 0.62 -1.0
1,749,748 + IAI46_08215 0.64 +0.8
1,749,905 - IAI46_08215 0.81 +0.2
1,749,928 + IAI46_08215 0.84 -0.6
1,750,050 - -0.2
1,750,089 + +0.3
1,750,089 + -0.6
1,750,102 + +0.2
1,750,170 - +0.6
1,750,337 + +0.5
1,750,375 - -0.1
1,750,375 - +1.1
1,750,434 + -0.8
1,750,436 + -0.8
1,750,437 - +0.3
1,750,437 - +0.7
1,750,437 - -0.6
1,750,437 - +0.4
1,750,446 - +0.9
1,750,470 - -0.0
1,750,540 + -0.7
1,750,541 - -0.2
1,750,543 + -1.3
1,750,559 + +1.2
1,750,559 + +0.3
1,750,564 - +0.6
1,750,564 - +0.3
1,750,569 + -1.6
1,750,570 - +0.4
1,750,570 - -0.7
1,750,586 - +0.1
1,750,586 - +1.4
1,750,612 - +0.7
1,750,791 + IAI46_08225 0.17 +0.1
1,750,876 + IAI46_08225 0.27 +0.2
1,750,877 - IAI46_08225 0.28 +0.0
1,750,877 - IAI46_08225 0.28 +0.3
1,750,911 + IAI46_08225 0.32 +0.5
1,750,995 + IAI46_08225 0.42 -1.3

Or see this region's nucleotide sequence