Strain Fitness in Serratia liquefaciens MT49 around IAI46_08080

Experiment: Cadmium acetate 40 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_08075 and IAI46_08080 are separated by 126 nucleotidesIAI46_08080 and IAI46_08085 are separated by 172 nucleotides IAI46_08075: IAI46_08075 - phosphomannomutase CpsG, at 1,711,194 to 1,712,567 _08075 IAI46_08080: IAI46_08080 - undecaprenyl-phosphate glucose phosphotransferase, at 1,712,694 to 1,714,088 _08080 IAI46_08085: IAI46_08085 - cellulase family glycosylhydrolase, at 1,714,261 to 1,715,523 _08085 Position (kb) 1712 1713 1714 1715Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1711.759 kb on + strand, within IAI46_08075at 1711.760 kb on + strand, within IAI46_08075at 1711.761 kb on - strand, within IAI46_08075at 1711.761 kb on - strand, within IAI46_08075at 1711.989 kb on + strand, within IAI46_08075at 1711.989 kb on + strand, within IAI46_08075at 1711.989 kb on + strand, within IAI46_08075at 1711.989 kb on + strand, within IAI46_08075at 1711.990 kb on - strand, within IAI46_08075at 1712.063 kb on - strand, within IAI46_08075at 1712.063 kb on - strand, within IAI46_08075at 1712.135 kb on + strand, within IAI46_08075at 1712.267 kb on + strand, within IAI46_08075at 1712.274 kb on - strand, within IAI46_08075at 1712.385 kb on + strand, within IAI46_08075at 1712.426 kb on + strand, within IAI46_08075at 1712.427 kb on - strand, within IAI46_08075at 1712.485 kb on + strandat 1712.510 kb on + strandat 1712.584 kb on + strandat 1712.586 kb on + strandat 1712.587 kb on - strandat 1712.604 kb on + strandat 1712.606 kb on + strandat 1712.631 kb on + strandat 1712.632 kb on - strandat 1712.633 kb on + strandat 1712.633 kb on + strandat 1712.633 kb on + strandat 1712.633 kb on + strandat 1712.634 kb on - strandat 1712.634 kb on - strandat 1712.634 kb on - strandat 1712.638 kb on - strandat 1712.664 kb on + strandat 1712.664 kb on + strandat 1712.669 kb on + strandat 1712.675 kb on - strandat 1712.681 kb on + strandat 1712.689 kb on + strandat 1712.689 kb on + strandat 1712.690 kb on - strandat 1712.694 kb on - strandat 1712.723 kb on + strandat 1712.823 kb on - strandat 1712.882 kb on + strand, within IAI46_08080at 1712.944 kb on + strand, within IAI46_08080at 1712.992 kb on + strand, within IAI46_08080at 1713.036 kb on + strand, within IAI46_08080at 1713.097 kb on - strand, within IAI46_08080at 1713.098 kb on + strand, within IAI46_08080at 1713.104 kb on + strand, within IAI46_08080at 1713.230 kb on + strand, within IAI46_08080at 1713.245 kb on + strand, within IAI46_08080at 1713.248 kb on + strand, within IAI46_08080at 1713.271 kb on + strand, within IAI46_08080at 1713.272 kb on - strand, within IAI46_08080at 1713.322 kb on + strand, within IAI46_08080at 1713.322 kb on + strand, within IAI46_08080at 1713.322 kb on + strand, within IAI46_08080at 1713.322 kb on + strand, within IAI46_08080at 1713.326 kb on + strand, within IAI46_08080at 1713.326 kb on + strand, within IAI46_08080at 1713.326 kb on + strand, within IAI46_08080at 1713.327 kb on - strand, within IAI46_08080at 1713.430 kb on + strand, within IAI46_08080at 1713.430 kb on + strand, within IAI46_08080at 1713.887 kb on + strand, within IAI46_08080at 1713.888 kb on - strand, within IAI46_08080at 1713.916 kb on + strand, within IAI46_08080at 1713.917 kb on - strand, within IAI46_08080at 1714.002 kb on + strandat 1714.070 kb on + strandat 1714.212 kb on + strandat 1714.268 kb on + strandat 1714.331 kb on - strandat 1714.336 kb on - strandat 1714.351 kb on + strandat 1714.380 kb on + strandat 1714.435 kb on + strand, within IAI46_08085at 1714.436 kb on - strand, within IAI46_08085at 1714.439 kb on + strand, within IAI46_08085at 1714.525 kb on + strand, within IAI46_08085at 1714.525 kb on + strand, within IAI46_08085at 1714.540 kb on + strand, within IAI46_08085at 1714.594 kb on + strand, within IAI46_08085at 1714.594 kb on + strand, within IAI46_08085at 1714.594 kb on + strand, within IAI46_08085at 1714.595 kb on - strand, within IAI46_08085at 1714.600 kb on + strand, within IAI46_08085at 1714.600 kb on + strand, within IAI46_08085at 1714.618 kb on + strand, within IAI46_08085at 1714.632 kb on + strand, within IAI46_08085at 1714.633 kb on - strand, within IAI46_08085at 1714.777 kb on - strand, within IAI46_08085at 1714.841 kb on + strand, within IAI46_08085at 1714.872 kb on + strand, within IAI46_08085at 1714.888 kb on + strand, within IAI46_08085at 1714.888 kb on + strand, within IAI46_08085at 1714.889 kb on - strand, within IAI46_08085at 1714.893 kb on + strand, within IAI46_08085at 1714.893 kb on + strand, within IAI46_08085at 1714.893 kb on + strand, within IAI46_08085at 1714.894 kb on - strand, within IAI46_08085at 1714.894 kb on - strand, within IAI46_08085at 1714.903 kb on + strand, within IAI46_08085at 1714.903 kb on + strand, within IAI46_08085at 1714.903 kb on + strand, within IAI46_08085at 1714.903 kb on + strand, within IAI46_08085at 1714.903 kb on + strand, within IAI46_08085at 1714.904 kb on - strand, within IAI46_08085at 1714.904 kb on - strand, within IAI46_08085at 1714.910 kb on + strand, within IAI46_08085at 1714.910 kb on + strand, within IAI46_08085at 1714.937 kb on + strand, within IAI46_08085at 1714.956 kb on + strand, within IAI46_08085at 1714.993 kb on + strand, within IAI46_08085at 1715.020 kb on + strand, within IAI46_08085at 1715.021 kb on - strand, within IAI46_08085at 1715.029 kb on - strand, within IAI46_08085at 1715.062 kb on + strand, within IAI46_08085at 1715.067 kb on - strand, within IAI46_08085at 1715.070 kb on - strand, within IAI46_08085at 1715.070 kb on - strand, within IAI46_08085at 1715.074 kb on + strand, within IAI46_08085

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Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium acetate 40 uM, aerobic
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1,711,759 + IAI46_08075 0.41 +0.2
1,711,760 + IAI46_08075 0.41 -0.4
1,711,761 - IAI46_08075 0.41 +1.5
1,711,761 - IAI46_08075 0.41 +1.3
1,711,989 + IAI46_08075 0.58 -0.5
1,711,989 + IAI46_08075 0.58 -0.6
1,711,989 + IAI46_08075 0.58 +1.4
1,711,989 + IAI46_08075 0.58 -1.1
1,711,990 - IAI46_08075 0.58 +1.3
1,712,063 - IAI46_08075 0.63 +0.4
1,712,063 - IAI46_08075 0.63 -1.2
1,712,135 + IAI46_08075 0.68 -1.7
1,712,267 + IAI46_08075 0.78 -1.3
1,712,274 - IAI46_08075 0.79 -0.6
1,712,385 + IAI46_08075 0.87 +0.4
1,712,426 + IAI46_08075 0.90 -0.8
1,712,427 - IAI46_08075 0.90 +1.2
1,712,485 + -0.5
1,712,510 + -1.4
1,712,584 + -0.1
1,712,586 + +0.1
1,712,587 - +0.8
1,712,604 + -0.1
1,712,606 + +1.4
1,712,631 + +0.1
1,712,632 - +1.6
1,712,633 + +0.5
1,712,633 + -0.1
1,712,633 + +1.4
1,712,633 + +1.0
1,712,634 - -0.5
1,712,634 - +1.0
1,712,634 - +1.3
1,712,638 - +0.6
1,712,664 + +0.5
1,712,664 + +2.0
1,712,669 + +0.1
1,712,675 - +0.9
1,712,681 + +0.4
1,712,689 + -0.4
1,712,689 + -0.2
1,712,690 - +0.2
1,712,694 - +0.7
1,712,723 + +1.4
1,712,823 - +1.4
1,712,882 + IAI46_08080 0.13 +0.5
1,712,944 + IAI46_08080 0.18 +0.2
1,712,992 + IAI46_08080 0.21 -0.3
1,713,036 + IAI46_08080 0.25 +1.2
1,713,097 - IAI46_08080 0.29 +0.7
1,713,098 + IAI46_08080 0.29 +1.4
1,713,104 + IAI46_08080 0.29 -0.5
1,713,230 + IAI46_08080 0.38 +0.3
1,713,245 + IAI46_08080 0.39 +1.1
1,713,248 + IAI46_08080 0.40 +0.7
1,713,271 + IAI46_08080 0.41 +1.0
1,713,272 - IAI46_08080 0.41 +0.2
1,713,322 + IAI46_08080 0.45 +1.3
1,713,322 + IAI46_08080 0.45 +0.7
1,713,322 + IAI46_08080 0.45 -2.8
1,713,322 + IAI46_08080 0.45 +0.8
1,713,326 + IAI46_08080 0.45 -0.4
1,713,326 + IAI46_08080 0.45 +2.1
1,713,326 + IAI46_08080 0.45 +0.1
1,713,327 - IAI46_08080 0.45 -0.5
1,713,430 + IAI46_08080 0.53 +1.2
1,713,430 + IAI46_08080 0.53 +0.4
1,713,887 + IAI46_08080 0.86 +0.6
1,713,888 - IAI46_08080 0.86 +0.9
1,713,916 + IAI46_08080 0.88 +1.7
1,713,917 - IAI46_08080 0.88 +0.9
1,714,002 + -0.5
1,714,070 + +0.7
1,714,212 + -0.7
1,714,268 + +1.1
1,714,331 - -0.4
1,714,336 - +0.5
1,714,351 + +1.1
1,714,380 + +1.5
1,714,435 + IAI46_08085 0.14 -0.4
1,714,436 - IAI46_08085 0.14 +0.6
1,714,439 + IAI46_08085 0.14 +0.1
1,714,525 + IAI46_08085 0.21 -0.1
1,714,525 + IAI46_08085 0.21 -0.6
1,714,540 + IAI46_08085 0.22 +0.4
1,714,594 + IAI46_08085 0.26 +0.8
1,714,594 + IAI46_08085 0.26 +1.5
1,714,594 + IAI46_08085 0.26 +0.2
1,714,595 - IAI46_08085 0.26 -0.1
1,714,600 + IAI46_08085 0.27 +0.2
1,714,600 + IAI46_08085 0.27 -0.6
1,714,618 + IAI46_08085 0.28 +0.9
1,714,632 + IAI46_08085 0.29 -0.2
1,714,633 - IAI46_08085 0.29 -0.4
1,714,777 - IAI46_08085 0.41 +0.4
1,714,841 + IAI46_08085 0.46 +0.4
1,714,872 + IAI46_08085 0.48 +0.2
1,714,888 + IAI46_08085 0.50 +0.4
1,714,888 + IAI46_08085 0.50 +0.3
1,714,889 - IAI46_08085 0.50 +0.6
1,714,893 + IAI46_08085 0.50 +0.6
1,714,893 + IAI46_08085 0.50 +0.9
1,714,893 + IAI46_08085 0.50 +0.2
1,714,894 - IAI46_08085 0.50 +0.1
1,714,894 - IAI46_08085 0.50 +0.2
1,714,903 + IAI46_08085 0.51 +0.7
1,714,903 + IAI46_08085 0.51 -0.0
1,714,903 + IAI46_08085 0.51 +0.5
1,714,903 + IAI46_08085 0.51 -0.6
1,714,903 + IAI46_08085 0.51 +1.1
1,714,904 - IAI46_08085 0.51 +0.1
1,714,904 - IAI46_08085 0.51 +1.8
1,714,910 + IAI46_08085 0.51 +0.8
1,714,910 + IAI46_08085 0.51 +0.2
1,714,937 + IAI46_08085 0.54 +0.5
1,714,956 + IAI46_08085 0.55 +0.6
1,714,993 + IAI46_08085 0.58 +0.1
1,715,020 + IAI46_08085 0.60 +0.2
1,715,021 - IAI46_08085 0.60 -1.8
1,715,029 - IAI46_08085 0.61 -0.1
1,715,062 + IAI46_08085 0.63 -0.0
1,715,067 - IAI46_08085 0.64 -1.0
1,715,070 - IAI46_08085 0.64 -0.1
1,715,070 - IAI46_08085 0.64 -0.4
1,715,074 + IAI46_08085 0.64 +0.0

Or see this region's nucleotide sequence