Strain Fitness in Serratia liquefaciens MT49 around IAI46_07765

Experiment: Cadmium acetate 40 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_07755 and IAI46_07760 are separated by 61 nucleotidesIAI46_07760 and IAI46_07765 are separated by 205 nucleotidesIAI46_07765 and IAI46_07770 are separated by 447 nucleotides IAI46_07755: IAI46_07755 - fimbrial protein, at 1,639,667 to 1,640,713 _07755 IAI46_07760: IAI46_07760 - helix-turn-helix domain-containing protein, at 1,640,775 to 1,641,233 _07760 IAI46_07765: IAI46_07765 - malate:quinone oxidoreductase, at 1,641,439 to 1,643,016 _07765 IAI46_07770: IAI46_07770 - GNAT family N-acetyltransferase, at 1,643,464 to 1,644,036 _07770 Position (kb) 1641 1642 1643 1644Strain fitness (log2 ratio) -2 -1 0 1 2at 1640.708 kb on - strandat 1640.708 kb on - strandat 1640.772 kb on - strandat 1640.919 kb on - strand, within IAI46_07760at 1640.926 kb on + strand, within IAI46_07760at 1641.076 kb on + strand, within IAI46_07760at 1641.076 kb on + strand, within IAI46_07760at 1641.077 kb on - strand, within IAI46_07760at 1641.077 kb on - strand, within IAI46_07760at 1641.102 kb on - strand, within IAI46_07760at 1641.219 kb on - strandat 1641.240 kb on - strandat 1641.240 kb on - strandat 1641.362 kb on - strandat 1641.465 kb on + strandat 1641.495 kb on - strandat 1641.522 kb on + strandat 1641.559 kb on - strandat 1641.725 kb on - strand, within IAI46_07765at 1641.735 kb on + strand, within IAI46_07765at 1641.736 kb on - strand, within IAI46_07765at 1641.736 kb on - strand, within IAI46_07765at 1642.072 kb on + strand, within IAI46_07765at 1642.088 kb on + strand, within IAI46_07765at 1642.166 kb on + strand, within IAI46_07765at 1642.410 kb on + strand, within IAI46_07765at 1642.504 kb on - strand, within IAI46_07765at 1642.517 kb on + strand, within IAI46_07765at 1642.517 kb on + strand, within IAI46_07765at 1642.525 kb on - strand, within IAI46_07765at 1642.525 kb on - strand, within IAI46_07765at 1642.525 kb on - strand, within IAI46_07765at 1642.667 kb on + strand, within IAI46_07765at 1642.668 kb on - strand, within IAI46_07765at 1642.757 kb on + strand, within IAI46_07765at 1642.757 kb on + strand, within IAI46_07765at 1642.758 kb on - strand, within IAI46_07765at 1642.758 kb on - strand, within IAI46_07765at 1642.758 kb on - strand, within IAI46_07765at 1642.844 kb on + strand, within IAI46_07765at 1642.845 kb on - strand, within IAI46_07765at 1642.845 kb on - strand, within IAI46_07765at 1642.845 kb on - strand, within IAI46_07765at 1642.845 kb on - strand, within IAI46_07765at 1642.845 kb on - strand, within IAI46_07765at 1642.883 kb on + strandat 1642.883 kb on + strandat 1642.883 kb on + strandat 1642.884 kb on - strandat 1642.924 kb on + strandat 1642.924 kb on + strandat 1642.942 kb on - strandat 1643.037 kb on + strandat 1643.037 kb on + strandat 1643.078 kb on - strandat 1643.129 kb on + strandat 1643.130 kb on - strandat 1643.174 kb on - strandat 1643.221 kb on - strandat 1643.223 kb on + strandat 1643.308 kb on + strandat 1643.330 kb on - strandat 1643.408 kb on - strandat 1643.408 kb on - strandat 1643.607 kb on + strand, within IAI46_07770at 1643.608 kb on - strand, within IAI46_07770at 1643.721 kb on - strand, within IAI46_07770at 1643.736 kb on + strand, within IAI46_07770at 1643.736 kb on + strand, within IAI46_07770at 1643.738 kb on + strand, within IAI46_07770at 1643.738 kb on + strand, within IAI46_07770at 1643.756 kb on - strand, within IAI46_07770at 1643.756 kb on - strand, within IAI46_07770at 1643.816 kb on - strand, within IAI46_07770at 1643.918 kb on + strand, within IAI46_07770at 1643.924 kb on + strand, within IAI46_07770at 1643.925 kb on - strand, within IAI46_07770at 1643.925 kb on - strand, within IAI46_07770at 1643.930 kb on + strand, within IAI46_07770at 1643.930 kb on + strand, within IAI46_07770at 1643.931 kb on - strand, within IAI46_07770at 1643.931 kb on - strand, within IAI46_07770at 1643.952 kb on - strand, within IAI46_07770at 1643.952 kb on - strand, within IAI46_07770

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Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium acetate 40 uM, aerobic
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1,640,708 - -2.1
1,640,708 - -2.1
1,640,772 - -0.2
1,640,919 - IAI46_07760 0.31 +0.4
1,640,926 + IAI46_07760 0.33 -0.4
1,641,076 + IAI46_07760 0.66 -0.5
1,641,076 + IAI46_07760 0.66 -1.0
1,641,077 - IAI46_07760 0.66 +0.2
1,641,077 - IAI46_07760 0.66 +0.0
1,641,102 - IAI46_07760 0.71 -0.2
1,641,219 - +0.2
1,641,240 - -0.2
1,641,240 - -0.0
1,641,362 - -0.2
1,641,465 + +0.8
1,641,495 - -1.2
1,641,522 + +0.1
1,641,559 - +0.5
1,641,725 - IAI46_07765 0.18 +1.4
1,641,735 + IAI46_07765 0.19 +0.0
1,641,736 - IAI46_07765 0.19 +1.5
1,641,736 - IAI46_07765 0.19 +0.9
1,642,072 + IAI46_07765 0.40 +0.8
1,642,088 + IAI46_07765 0.41 +0.5
1,642,166 + IAI46_07765 0.46 -0.4
1,642,410 + IAI46_07765 0.62 +0.6
1,642,504 - IAI46_07765 0.67 -0.3
1,642,517 + IAI46_07765 0.68 +0.9
1,642,517 + IAI46_07765 0.68 +0.0
1,642,525 - IAI46_07765 0.69 -0.1
1,642,525 - IAI46_07765 0.69 +0.0
1,642,525 - IAI46_07765 0.69 +0.2
1,642,667 + IAI46_07765 0.78 +0.5
1,642,668 - IAI46_07765 0.78 +0.7
1,642,757 + IAI46_07765 0.84 -1.4
1,642,757 + IAI46_07765 0.84 -0.2
1,642,758 - IAI46_07765 0.84 -0.4
1,642,758 - IAI46_07765 0.84 +0.9
1,642,758 - IAI46_07765 0.84 +0.7
1,642,844 + IAI46_07765 0.89 +0.1
1,642,845 - IAI46_07765 0.89 +0.5
1,642,845 - IAI46_07765 0.89 -0.5
1,642,845 - IAI46_07765 0.89 +1.0
1,642,845 - IAI46_07765 0.89 +0.2
1,642,845 - IAI46_07765 0.89 -0.2
1,642,883 + -1.8
1,642,883 + -0.2
1,642,883 + -0.4
1,642,884 - +0.0
1,642,924 + +0.6
1,642,924 + -1.0
1,642,942 - -0.9
1,643,037 + +1.4
1,643,037 + -0.4
1,643,078 - +1.8
1,643,129 + +0.6
1,643,130 - +0.8
1,643,174 - -0.5
1,643,221 - +0.1
1,643,223 + -0.3
1,643,308 + +0.8
1,643,330 - +1.1
1,643,408 - -0.5
1,643,408 - -0.9
1,643,607 + IAI46_07770 0.25 -0.2
1,643,608 - IAI46_07770 0.25 +0.1
1,643,721 - IAI46_07770 0.45 +0.5
1,643,736 + IAI46_07770 0.47 -0.4
1,643,736 + IAI46_07770 0.47 +0.6
1,643,738 + IAI46_07770 0.48 +0.6
1,643,738 + IAI46_07770 0.48 +0.6
1,643,756 - IAI46_07770 0.51 +0.1
1,643,756 - IAI46_07770 0.51 +0.6
1,643,816 - IAI46_07770 0.61 +0.9
1,643,918 + IAI46_07770 0.79 -0.1
1,643,924 + IAI46_07770 0.80 -1.1
1,643,925 - IAI46_07770 0.80 +0.1
1,643,925 - IAI46_07770 0.80 +0.2
1,643,930 + IAI46_07770 0.81 +1.7
1,643,930 + IAI46_07770 0.81 +0.7
1,643,931 - IAI46_07770 0.82 +1.3
1,643,931 - IAI46_07770 0.82 +0.6
1,643,952 - IAI46_07770 0.85 +0.6
1,643,952 - IAI46_07770 0.85 +0.6

Or see this region's nucleotide sequence